Wall clock time and date at job start Sat Apr 11 2020 05:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.01845 * 2 1 4 4 C 1.49473 * 109.00428 * 119.15673 * 2 1 3 5 5 O 1.21288 * 122.61444 * 300.60004 * 4 2 1 6 6 N 1.34046 * 114.76750 * 120.82657 * 4 2 1 7 7 C 1.46501 * 126.24987 * 179.73192 * 6 4 2 8 8 S 1.66456 * 107.49730 * 359.76969 * 6 4 2 9 9 O 1.42100 * 107.15911 * 247.47734 * 8 6 4 10 10 O 1.42093 * 107.16302 * 112.51752 * 8 6 4 11 11 N 1.46872 * 109.11702 * 240.91600 * 2 1 3 12 12 C 1.46503 * 127.91617 * 59.54853 * 11 2 1 13 13 C 1.50693 * 109.47151 * 84.08570 * 12 11 2 14 14 C 1.38302 * 119.93011 * 94.75162 * 13 12 11 15 15 C 1.38103 * 120.06699 * 179.97438 * 14 13 12 16 16 C 1.38881 * 119.93332 * 359.97438 * 15 14 13 17 17 O 1.35746 * 120.06852 * 179.97438 * 16 15 14 18 18 C 1.34826 * 117.00160 * 5.45868 * 17 16 15 19 19 H 1.08002 * 119.99794 * 354.83518 * 18 17 16 20 20 C 1.38652 * 120.00085 * 174.83099 * 18 17 16 21 21 N 1.31557 * 120.00030 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 120.00243 * 0.02562 * 20 18 17 23 23 H 1.48509 * 109.47153 * 270.00190 * 22 20 18 24 24 H 1.48497 * 109.47499 * 150.00123 * 22 20 18 25 25 H 1.48503 * 109.46892 * 29.99901 * 22 20 18 26 26 C 1.38883 * 119.85839 * 0.25985 * 16 15 14 27 27 C 1.38096 * 119.93206 * 359.49174 * 26 16 15 28 28 H 1.09001 * 109.47305 * 183.84455 * 1 2 3 29 29 H 1.09000 * 109.46868 * 303.84501 * 1 2 3 30 30 H 1.08997 * 109.47358 * 63.84042 * 1 2 3 31 31 H 1.09001 * 109.46723 * 270.04422 * 7 6 4 32 32 H 1.09004 * 109.47473 * 30.03954 * 7 6 4 33 33 H 1.08996 * 109.47077 * 150.04350 * 7 6 4 34 34 H 1.09003 * 109.46799 * 324.08412 * 12 11 2 35 35 H 1.08999 * 109.46745 * 204.09040 * 12 11 2 36 36 H 1.07998 * 119.96571 * 359.97438 * 14 13 12 37 37 H 1.08001 * 120.03013 * 179.97438 * 15 14 13 38 38 H 0.97006 * 120.00371 * 179.97438 * 21 20 18 39 39 H 1.08001 * 120.02754 * 179.71966 * 26 16 15 40 40 H 1.08004 * 119.96600 * 180.27964 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8852 1.0305 0.0000 4 6 2.0167 -0.6885 1.2342 5 8 1.7379 -0.3042 2.3503 6 7 2.7893 -1.7610 1.0113 7 6 3.4026 -2.6141 2.0322 8 16 2.9254 -1.9458 -0.6374 9 8 2.2427 -3.1433 -0.9828 10 8 4.2783 -1.6776 -0.9791 11 7 2.0110 -0.6746 -1.2127 12 6 1.7523 -0.3106 -2.6081 13 6 2.7338 0.7476 -3.0414 14 6 3.8986 0.3835 -3.6920 15 6 4.7998 1.3510 -4.0908 16 6 4.5352 2.6908 -3.8383 17 8 5.4194 3.6440 -4.2287 18 6 6.4788 3.2354 -4.9556 19 1 6.6392 2.1819 -5.1312 20 6 7.3624 4.1676 -5.4777 21 7 8.3959 3.7689 -6.1874 22 14 7.0855 5.9897 -5.1734 23 1 6.2411 6.5501 -6.2590 24 1 8.3935 6.6923 -5.1510 25 1 6.4015 6.1752 -3.8685 26 6 3.3669 3.0528 -3.1804 27 6 2.4673 2.0810 -2.7887 28 1 -0.3634 -1.0253 0.0689 29 1 -0.3633 0.5724 0.8535 30 1 -0.3634 0.4530 -0.9224 31 1 4.3883 -2.2247 2.2868 32 1 2.7745 -2.6236 2.9231 33 1 3.5013 -3.6287 1.6464 34 1 0.7372 0.0756 -2.7006 35 1 1.8650 -1.1914 -3.2401 36 1 4.1037 -0.6585 -3.8884 37 1 5.7095 1.0660 -4.5985 38 1 9.0139 4.4211 -6.5531 39 1 3.1606 4.0935 -2.9786 40 1 1.5564 2.3623 -2.2810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295130971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:52 Heat of formation + Delta-G solvation = -103.567664 kcal Electronic energy + Delta-G solvation = -27702.244424 eV Core-core repulsion = 23610.044722 eV Total energy + Delta-G solvation = -4092.199702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.88449 -40.89967 -38.92456 -38.56950 -37.52887 -37.22883 -36.68112 -34.50454 -33.03668 -31.78995 -30.51679 -29.32208 -27.63201 -26.21395 -24.56000 -23.74073 -22.82903 -21.96555 -21.02433 -19.80750 -19.14285 -18.83206 -18.18157 -18.08353 -17.64176 -16.75906 -16.64114 -16.45239 -16.31369 -15.87938 -15.75930 -15.62611 -15.28254 -14.71019 -14.50111 -14.34876 -14.19412 -14.11037 -13.94668 -13.76761 -13.53388 -13.40704 -13.37304 -13.08500 -12.96100 -12.94699 -12.56310 -12.47165 -12.45789 -12.10609 -11.93411 -11.54888 -11.32595 -11.27551 -10.91309 -10.37816 -9.77718 -9.04716 -8.50919 -6.24160 -1.13697 0.52809 0.60357 0.70973 1.11451 1.31382 1.36012 1.52064 1.75852 2.12966 2.27550 2.75670 2.85045 3.08101 3.17042 3.46209 3.81868 3.87780 4.04054 4.08771 4.16480 4.19468 4.28958 4.37222 4.50430 4.56937 4.67030 4.71523 4.78699 4.81107 4.88770 4.96539 5.01641 5.25960 5.28755 5.31448 5.38435 5.57819 5.74713 5.81058 5.91793 6.04303 6.25803 6.83050 7.56808 8.60857 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019029 B = 0.002989 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.083156 B = 9365.856210 C = 9643.458021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 H 0.150 0.850 4 C 0.512 3.488 5 O -0.490 6.490 6 N -0.943 5.943 7 C 0.082 3.918 8 S 2.759 3.241 9 O -0.972 6.972 10 O -0.981 6.981 11 N -0.975 5.975 12 C 0.214 3.786 13 C -0.187 4.187 14 C -0.059 4.059 15 C -0.245 4.245 16 C 0.124 3.876 17 O -0.243 6.243 18 C -0.401 4.401 19 H 0.077 0.923 20 C 0.008 3.992 21 N -0.924 5.924 22 Si 0.975 3.025 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.261 1.261 26 C -0.195 4.195 27 C -0.040 4.040 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.285 0.715 39 H 0.133 0.867 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.121 -10.023 14.528 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 H 0.167 0.833 4 C 0.297 3.703 5 O -0.359 6.359 6 N -0.790 5.790 7 C -0.060 4.060 8 S 2.769 3.231 9 O -0.954 6.954 10 O -0.963 6.963 11 N -0.822 5.822 12 C 0.093 3.907 13 C -0.189 4.189 14 C -0.078 4.078 15 C -0.264 4.264 16 C 0.075 3.925 17 O -0.151 6.151 18 C -0.477 4.477 19 H 0.095 0.905 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.796 3.204 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.185 1.185 26 C -0.214 4.214 27 C -0.058 4.058 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.161 0.839 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.561 -10.297 14.566 26.473 hybrid contribution 1.186 0.593 -0.097 1.330 sum -18.375 -9.704 14.469 25.321 Atomic orbital electron populations 1.22074 0.87587 1.04422 1.06275 1.21581 1.01293 1.00895 0.79629 0.83291 1.20936 0.77066 0.79619 0.92642 1.90760 1.55741 1.65027 1.24413 1.56682 1.56381 1.36281 1.29633 1.22002 0.99507 0.93301 0.91140 1.03301 0.73836 0.73889 0.72079 1.93653 1.74457 1.46210 1.81095 1.93701 1.37153 1.84446 1.80952 1.57290 1.68236 1.45802 1.10829 1.20195 0.99277 0.96489 0.74709 1.20210 0.97694 0.95916 1.05092 1.20965 0.93127 0.98193 0.95506 1.21241 1.02464 0.93460 1.09276 1.19807 0.90209 0.88296 0.94194 1.83504 1.32681 1.34448 1.64420 1.20694 1.01721 0.95194 1.30138 0.90550 1.25337 0.94131 1.04757 0.94757 1.69741 1.14516 1.37425 1.34825 0.85165 0.78192 0.77206 0.79806 1.18769 1.19362 1.18543 1.20622 0.93284 1.01504 1.05990 1.21063 0.98409 0.90580 0.95735 0.91424 0.89277 0.87017 0.89609 0.87767 0.87887 0.83883 0.87943 0.85998 0.88248 0.90547 0.84933 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.22 71.98 0.66 -0.43 16 2 C 0.08 1.03 3.67 43.79 0.16 1.19 16 3 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.51 9.57 7.08 87.39 0.62 10.19 16 5 O -0.49 -11.23 17.45 -3.06 -0.05 -11.29 16 6 N -0.94 -17.95 3.42 -490.23 -1.68 -19.63 16 7 C 0.08 1.13 11.09 127.77 1.42 2.54 16 8 S 2.76 61.64 6.30 -56.49 -0.36 61.29 16 9 O -0.97 -24.41 18.17 -128.13 -2.33 -26.74 16 10 O -0.98 -30.27 18.17 -128.13 -2.33 -32.60 16 11 N -0.98 -16.38 3.11 -502.49 -1.56 -17.95 16 12 C 0.21 3.21 6.45 85.63 0.55 3.76 16 13 C -0.19 -4.63 5.47 -19.84 -0.11 -4.74 16 14 C -0.06 -2.01 9.67 22.25 0.22 -1.79 16 15 C -0.25 -10.89 9.17 22.39 0.21 -10.69 16 16 C 0.12 5.68 6.65 22.58 0.15 5.83 16 17 O -0.24 -13.14 8.59 -22.66 -0.19 -13.34 16 18 C -0.40 -23.93 9.95 67.92 0.68 -23.26 16 19 H 0.08 4.84 5.44 -2.91 -0.02 4.83 16 20 C 0.01 0.49 5.49 84.83 0.47 0.96 16 21 N -0.92 -55.88 13.96 21.61 0.30 -55.58 16 22 Si 0.97 45.35 28.62 68.60 1.96 47.31 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 26 C -0.19 -6.68 9.99 22.39 0.22 -6.46 16 27 C -0.04 -0.95 9.71 22.25 0.22 -0.73 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.30 7.17 -2.39 -0.02 0.28 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.19 7.95 -2.39 -0.02 1.17 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.14 0.87 7.12 -2.39 -0.02 0.86 16 35 H 0.10 1.36 8.05 -2.39 -0.02 1.34 16 36 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.10 5.02 5.64 -2.91 -0.02 5.00 16 38 H 0.28 15.75 8.31 -92.70 -0.77 14.98 16 39 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 40 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -82.35 357.28 0.30 -82.05 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.08 Total: 10.09 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 5.46 Total: -23.63 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -2.94 Total: -93.15 kcal Atomic # 8 Polarization: -79.05 SS G_CDS: -4.90 Total: -83.96 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.96 Total: 47.31 kcal Atomic # 16 Polarization: 61.64 SS G_CDS: -0.36 Total: 61.29 kcal Total: -82.35 0.30 -82.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295130971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.513 kcal (2) G-P(sol) polarization free energy of solvation -82.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds