Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81398 * 109.47426 * 2 1 4 4 O 1.42099 * 108.57915 * 65.50911 * 3 2 1 5 5 O 1.42105 * 108.57918 * 294.48691 * 3 2 1 6 6 C 1.81397 * 101.92535 * 179.97438 * 3 2 1 7 7 C 1.53497 * 114.20838 * 180.02562 * 6 3 2 8 8 N 1.47064 * 87.98634 * 220.34499 * 7 6 3 9 9 S 1.65600 * 136.05970 * 207.08256 * 8 7 6 10 10 O 1.42099 * 106.40041 * 336.46003 * 9 8 7 11 11 O 1.42103 * 106.40382 * 203.54095 * 9 8 7 12 12 N 1.65599 * 107.21815 * 90.00128 * 9 8 7 13 13 C 1.46506 * 119.99791 * 89.99936 * 12 9 8 14 14 C 1.46501 * 120.00111 * 270.00257 * 12 9 8 15 15 H 1.09000 * 109.46894 * 0.02562 * 14 12 9 16 16 C 1.52998 * 109.46930 * 239.99986 * 14 12 9 17 17 C 1.50700 * 109.47152 * 119.99702 * 14 12 9 18 18 H 1.08002 * 119.99752 * 0.02562 * 17 14 12 19 19 C 1.37872 * 119.99830 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00186 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 120.00047 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47061 * 90.00103 * 21 19 17 23 23 H 1.48500 * 109.47241 * 210.00623 * 21 19 17 24 24 H 1.48503 * 109.47084 * 330.00422 * 21 19 17 25 25 C 1.47070 * 87.88377 * 27.34177 * 8 7 6 26 26 H 1.09001 * 109.46825 * 60.00129 * 1 2 3 27 27 H 1.08996 * 109.46904 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46999 * 300.00357 * 1 2 3 29 29 H 1.09001 * 109.47379 * 239.99915 * 2 1 3 30 30 H 1.08998 * 109.47337 * 119.99842 * 2 1 3 31 31 H 1.08999 * 113.41201 * 313.20187 * 6 3 2 32 32 H 1.09001 * 113.46789 * 105.56557 * 7 6 3 33 33 H 1.09000 * 113.46641 * 335.12656 * 7 6 3 34 34 H 1.09001 * 109.47060 * 90.00564 * 13 12 9 35 35 H 1.09004 * 109.47073 * 210.00053 * 13 12 9 36 36 H 1.09000 * 109.47212 * 330.00135 * 13 12 9 37 37 H 1.08997 * 109.47624 * 59.99787 * 16 14 12 38 38 H 1.09001 * 109.46985 * 179.97438 * 16 14 12 39 39 H 1.09000 * 109.47373 * 299.99757 * 16 14 12 40 40 H 0.96996 * 120.00238 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.46928 * 87.43886 * 25 8 7 42 42 H 1.09004 * 113.46787 * 217.87060 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7593 2.3232 -1.2258 6 6 3.9330 1.4719 0.0008 7 6 4.7409 2.7771 0.0016 8 7 5.6666 2.1438 -0.9497 9 16 7.2664 2.3070 -1.3449 10 8 7.6426 3.6222 -0.9602 11 8 7.4043 1.8157 -2.6711 12 7 8.1195 1.2733 -0.3723 13 6 8.3759 -0.1010 -0.8105 14 6 8.6179 1.7330 0.9264 15 1 8.3316 2.7738 1.0777 16 6 10.1428 1.6130 0.9590 17 6 8.0237 0.8849 2.0213 18 1 7.3432 0.0833 1.7744 19 6 8.3495 1.1316 3.3381 20 7 9.1785 2.1073 3.6387 21 14 7.6136 0.0799 4.6952 22 1 8.4980 -1.0847 4.9537 23 1 7.4854 0.8888 5.9339 24 1 6.2722 -0.4006 4.2768 25 6 4.5446 1.3064 -1.4001 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.2721 0.7363 0.7302 32 1 5.1970 3.0047 0.9650 33 1 4.1982 3.6237 -0.4190 34 1 9.3148 -0.1370 -1.3630 35 1 8.4413 -0.7537 0.0600 36 1 7.5623 -0.4347 -1.4546 37 1 10.5726 2.2264 0.1671 38 1 10.5136 1.9555 1.9251 39 1 10.4287 0.5721 0.8080 40 1 9.4080 2.2806 4.5650 41 1 3.9503 1.7653 -2.1902 42 1 4.8336 0.2810 -1.6309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332070139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = -97.566063 kcal Electronic energy + Delta-G solvation = -27290.787630 eV Core-core repulsion = 23334.292128 eV Total energy + Delta-G solvation = -3956.495502 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.37193 -37.11443 -36.78675 -36.23434 -36.18892 -35.36837 -33.44227 -32.69313 -29.19089 -29.05047 -26.28921 -25.60285 -25.26992 -24.45743 -21.95305 -20.76582 -19.00184 -18.64524 -17.72312 -17.20490 -16.86003 -16.58651 -16.36287 -16.09425 -15.62699 -14.87857 -14.72862 -14.47611 -14.03423 -13.50333 -13.49206 -13.43812 -13.11243 -12.90625 -12.82598 -12.74694 -12.25703 -12.14188 -12.11657 -11.93967 -11.89524 -11.84643 -11.65535 -11.48654 -11.30798 -11.18924 -11.06141 -10.93560 -10.87849 -10.52576 -10.36285 -10.29645 -10.15803 -9.41235 -9.06907 -8.57176 -8.07454 -6.17863 -4.27451 -0.24358 0.99460 2.49809 3.17370 3.21038 3.25639 3.26415 3.30163 3.56241 3.92072 4.03619 4.26602 4.33689 4.40851 4.47156 4.59512 4.82089 4.89443 5.12548 5.20161 5.23450 5.28577 5.37054 5.52492 5.58732 5.61228 5.76213 5.91938 6.07096 6.19287 6.38666 6.57354 6.79268 6.81951 7.03303 7.38212 7.52464 7.69053 7.95905 8.16391 8.75112 9.39249 10.87101 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.004974 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.652199 B = 5627.755909 C = 7286.889814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.613 4.613 3 S 2.419 3.581 4 O -0.931 6.931 5 O -0.934 6.934 6 C -0.629 4.629 7 C 0.168 3.832 8 N -1.039 6.039 9 S 2.800 3.200 10 O -0.970 6.970 11 O -0.989 6.989 12 N -0.985 5.985 13 C 0.107 3.893 14 C 0.266 3.734 15 H 0.059 0.941 16 C -0.144 4.144 17 C -0.529 4.529 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.159 3.841 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.170 0.830 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.012 0.988 38 H 0.093 0.907 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.104 0.896 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.140 -6.331 -6.971 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.742 4.742 3 S 2.600 3.400 4 O -0.928 6.928 5 O -0.931 6.931 6 C -0.740 4.740 7 C 0.040 3.960 8 N -0.877 5.877 9 S 2.811 3.189 10 O -0.954 6.954 11 O -0.973 6.973 12 N -0.828 5.828 13 C -0.040 4.040 14 C 0.163 3.837 15 H 0.077 0.923 16 C -0.204 4.204 17 C -0.568 4.568 18 H 0.081 0.919 19 C -0.138 4.138 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.207 1.207 23 H -0.210 1.210 24 H -0.199 1.199 25 C 0.032 3.968 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.188 0.812 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.112 0.888 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.913 -4.824 -7.545 15.715 hybrid contribution 0.129 -1.766 1.247 2.166 sum -12.784 -6.591 -6.299 15.702 Atomic orbital electron populations 1.21517 0.90479 1.04813 1.03689 1.30180 1.07289 1.24821 1.11899 1.08128 0.77821 0.78496 0.75533 1.93604 1.80800 1.73142 1.45280 1.93588 1.80746 1.73260 1.45534 1.32530 1.23068 1.10164 1.08218 1.21908 0.87916 0.90709 0.95434 1.60719 1.23496 1.51356 1.52101 1.01397 0.71170 0.73602 0.72766 1.93592 1.80945 1.36860 1.84026 1.93547 1.85465 1.82214 1.36068 1.57804 1.67220 1.23554 1.34203 1.21197 0.99407 0.83589 0.99779 1.18778 0.91781 0.96114 0.77032 0.92338 1.22051 0.97655 0.98750 1.01936 1.21336 1.27898 1.17022 0.90584 0.91949 1.24929 0.94982 0.95226 0.98638 1.69870 1.33764 1.29552 1.19003 0.86549 0.79394 0.80202 0.81503 1.20660 1.21047 1.19949 1.22122 0.86077 0.97299 0.91348 0.90850 0.90107 0.90857 0.84752 0.84704 0.81205 0.87390 0.89170 0.93701 0.90123 0.93320 0.96853 0.88821 0.94834 0.92503 0.87839 0.88990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.92 37.16 0.37 -0.61 16 2 C -0.61 -3.95 6.52 37.16 0.24 -3.71 16 3 S 2.42 24.42 4.77 -107.50 -0.51 23.91 16 4 O -0.93 -12.76 18.10 -57.83 -1.05 -13.81 16 5 O -0.93 -11.55 17.12 -57.83 -0.99 -12.54 16 6 C -0.63 -6.75 4.54 -26.08 -0.12 -6.86 16 7 C 0.17 2.36 8.33 -8.51 -0.07 2.29 16 8 N -1.04 -16.45 4.29 -125.05 -0.54 -16.99 16 9 S 2.80 54.73 6.64 -107.50 -0.71 54.02 16 10 O -0.97 -22.12 16.70 -57.17 -0.95 -23.08 16 11 O -0.99 -19.99 17.21 -57.17 -0.98 -20.98 16 12 N -0.98 -19.81 3.12 -115.85 -0.36 -20.17 16 13 C 0.11 1.81 9.28 59.85 0.56 2.36 16 14 C 0.27 6.28 2.62 -69.08 -0.18 6.10 16 15 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 16 C -0.14 -3.36 8.97 37.16 0.33 -3.03 16 17 C -0.53 -12.90 7.99 -34.44 -0.28 -13.17 16 18 H 0.06 1.45 7.33 -52.49 -0.38 1.07 16 19 C 0.07 1.66 5.30 -17.82 -0.09 1.56 16 20 N -0.88 -23.59 11.32 55.43 0.63 -22.97 16 21 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 25 C 0.16 1.81 8.29 -8.37 -0.07 1.74 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.17 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 33 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 36 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 39 H 0.03 0.72 7.67 -51.93 -0.40 0.33 16 40 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.10 1.03 7.32 -51.93 -0.38 0.65 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -35.19 369.86 -10.62 -45.81 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.39 Total: 0.01 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 0.69 Total: -13.32 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.27 Total: -60.12 kcal Atomic # 8 Polarization: -66.43 SS G_CDS: -3.98 Total: -70.41 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 16 Polarization: 79.15 SS G_CDS: -1.23 Total: 77.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.19 -10.62 -45.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332070139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.761 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds