Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81398 * 109.47426 * 2 1 4 4 O 1.42099 * 108.57915 * 65.50911 * 3 2 1 5 5 O 1.42105 * 108.57918 * 294.48691 * 3 2 1 6 6 C 1.81397 * 101.92535 * 179.97438 * 3 2 1 7 7 C 1.53497 * 114.20838 * 180.02562 * 6 3 2 8 8 N 1.47064 * 87.98634 * 220.34499 * 7 6 3 9 9 S 1.65600 * 136.05970 * 207.08256 * 8 7 6 10 10 O 1.42099 * 106.40041 * 336.46003 * 9 8 7 11 11 O 1.42103 * 106.40382 * 203.54095 * 9 8 7 12 12 N 1.65599 * 107.21815 * 90.00128 * 9 8 7 13 13 C 1.46506 * 119.99791 * 89.99936 * 12 9 8 14 14 C 1.46501 * 120.00111 * 270.00257 * 12 9 8 15 15 H 1.09000 * 109.46894 * 0.02562 * 14 12 9 16 16 C 1.52998 * 109.46930 * 239.99986 * 14 12 9 17 17 C 1.50700 * 109.47152 * 119.99702 * 14 12 9 18 18 H 1.08002 * 119.99752 * 0.02562 * 17 14 12 19 19 C 1.37872 * 119.99830 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00186 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 120.00047 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47061 * 90.00103 * 21 19 17 23 23 H 1.48500 * 109.47241 * 210.00623 * 21 19 17 24 24 H 1.48503 * 109.47084 * 330.00422 * 21 19 17 25 25 C 1.47070 * 87.88377 * 27.34177 * 8 7 6 26 26 H 1.09001 * 109.46825 * 60.00129 * 1 2 3 27 27 H 1.08996 * 109.46904 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46999 * 300.00357 * 1 2 3 29 29 H 1.09001 * 109.47379 * 239.99915 * 2 1 3 30 30 H 1.08998 * 109.47337 * 119.99842 * 2 1 3 31 31 H 1.08999 * 113.41201 * 313.20187 * 6 3 2 32 32 H 1.09001 * 113.46789 * 105.56557 * 7 6 3 33 33 H 1.09000 * 113.46641 * 335.12656 * 7 6 3 34 34 H 1.09001 * 109.47060 * 90.00564 * 13 12 9 35 35 H 1.09004 * 109.47073 * 210.00053 * 13 12 9 36 36 H 1.09000 * 109.47212 * 330.00135 * 13 12 9 37 37 H 1.08997 * 109.47624 * 59.99787 * 16 14 12 38 38 H 1.09001 * 109.46985 * 179.97438 * 16 14 12 39 39 H 1.09000 * 109.47373 * 299.99757 * 16 14 12 40 40 H 0.96996 * 120.00238 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.46928 * 87.43886 * 25 8 7 42 42 H 1.09004 * 113.46787 * 217.87060 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7593 2.3232 -1.2258 6 6 3.9330 1.4719 0.0008 7 6 4.7409 2.7771 0.0016 8 7 5.6666 2.1438 -0.9497 9 16 7.2664 2.3070 -1.3449 10 8 7.6426 3.6222 -0.9602 11 8 7.4043 1.8157 -2.6711 12 7 8.1195 1.2733 -0.3723 13 6 8.3759 -0.1010 -0.8105 14 6 8.6179 1.7330 0.9264 15 1 8.3316 2.7738 1.0777 16 6 10.1428 1.6130 0.9590 17 6 8.0237 0.8849 2.0213 18 1 7.3432 0.0833 1.7744 19 6 8.3495 1.1316 3.3381 20 7 9.1785 2.1073 3.6387 21 14 7.6136 0.0799 4.6952 22 1 8.4980 -1.0847 4.9537 23 1 7.4854 0.8888 5.9339 24 1 6.2722 -0.4006 4.2768 25 6 4.5446 1.3064 -1.4001 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.2721 0.7363 0.7302 32 1 5.1970 3.0047 0.9650 33 1 4.1982 3.6237 -0.4190 34 1 9.3148 -0.1370 -1.3630 35 1 8.4413 -0.7537 0.0600 36 1 7.5623 -0.4347 -1.4546 37 1 10.5726 2.2264 0.1671 38 1 10.5136 1.9555 1.9251 39 1 10.4287 0.5721 0.8080 40 1 9.4080 2.2806 4.5650 41 1 3.9503 1.7653 -2.1902 42 1 4.8336 0.2810 -1.6309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332070139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -126.348328 kcal Electronic energy + Delta-G solvation = -27292.035723 eV Core-core repulsion = 23334.292128 eV Total energy + Delta-G solvation = -3957.743595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40601 -38.41360 -38.00436 -37.91588 -37.07066 -36.99753 -34.51841 -33.94559 -30.95822 -30.16266 -27.33776 -27.22715 -27.00179 -25.06543 -23.01721 -22.46441 -19.92804 -19.80972 -19.03668 -18.47495 -18.41079 -18.04203 -17.39068 -17.08647 -16.90358 -16.52268 -15.71283 -15.47516 -15.15817 -14.96034 -14.91621 -14.51684 -14.27446 -14.01271 -13.80641 -13.74561 -13.50631 -13.33366 -13.31658 -13.24926 -13.22610 -13.13523 -13.03135 -13.01693 -12.77036 -12.64489 -12.29351 -12.24185 -12.15541 -12.13243 -11.93272 -11.67295 -11.25075 -11.09045 -10.50393 -10.26298 -9.70562 -8.08846 -6.24452 -1.03747 -0.47195 1.47030 1.48407 1.57131 1.73010 1.90874 2.40854 2.42887 2.47716 2.78638 3.10943 3.20261 3.26183 3.46586 3.82529 3.91921 4.04466 4.10117 4.28706 4.40522 4.44940 4.48989 4.65138 4.74006 4.78981 4.80689 4.86134 4.94473 4.95170 4.97073 5.13387 5.19460 5.23547 5.30798 5.60161 5.68161 5.83565 6.07960 6.27043 6.84988 7.45694 8.95927 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.004974 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.652199 B = 5627.755909 C = 7286.889814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.586 4.586 3 S 2.420 3.580 4 O -0.976 6.976 5 O -0.963 6.963 6 C -0.613 4.613 7 C 0.144 3.856 8 N -1.049 6.049 9 S 2.814 3.186 10 O -1.015 7.015 11 O -0.997 6.997 12 N -0.991 5.991 13 C 0.099 3.901 14 C 0.271 3.729 15 H 0.021 0.979 16 C -0.139 4.139 17 C -0.527 4.527 18 H 0.077 0.923 19 C 0.015 3.985 20 N -0.920 5.920 21 Si 0.957 3.043 22 H -0.277 1.277 23 H -0.294 1.294 24 H -0.255 1.255 25 C 0.151 3.849 26 H 0.073 0.927 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.170 0.830 30 H 0.159 0.841 31 H 0.188 0.812 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.016 0.984 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.262 0.738 41 H 0.117 0.883 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 -9.741 -7.573 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.719 4.719 3 S 2.605 3.395 4 O -0.973 6.973 5 O -0.960 6.960 6 C -0.723 4.723 7 C 0.018 3.982 8 N -0.890 5.890 9 S 2.826 3.174 10 O -0.999 6.999 11 O -0.981 6.981 12 N -0.833 5.833 13 C -0.046 4.046 14 C 0.167 3.833 15 H 0.039 0.961 16 C -0.199 4.199 17 C -0.566 4.566 18 H 0.095 0.905 19 C -0.185 4.185 20 N -0.559 5.559 21 Si 0.782 3.218 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.179 1.179 25 C 0.026 3.974 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.085 0.915 29 H 0.187 0.813 30 H 0.177 0.823 31 H 0.206 0.794 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.035 0.965 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.882 -8.215 -8.181 18.865 hybrid contribution 0.652 -0.731 1.366 1.681 sum -14.230 -8.946 -6.815 18.138 Atomic orbital electron populations 1.21716 0.90502 1.06304 1.03548 1.29997 1.07045 1.19904 1.14967 1.07953 0.77021 0.80513 0.73997 1.93551 1.81104 1.75818 1.46812 1.93547 1.80758 1.75554 1.46137 1.32476 1.23406 1.08052 1.08327 1.22166 0.88366 0.93292 0.94408 1.60392 1.23171 1.52657 1.52829 1.00645 0.71831 0.72593 0.72347 1.93529 1.82365 1.39469 1.84551 1.93523 1.86147 1.82125 1.36327 1.57670 1.67991 1.24941 1.32725 1.21434 1.01059 0.81765 1.00375 1.18441 0.91837 0.94298 0.78768 0.96119 1.21947 0.97768 0.99431 1.00711 1.21615 1.27476 1.16859 0.90664 0.90493 1.25726 0.95434 0.96293 1.01013 1.70025 1.35375 1.31360 1.19153 0.85578 0.79502 0.78406 0.78300 1.20323 1.22043 1.17917 1.22573 0.84253 0.98575 0.92011 0.90835 0.87622 0.91536 0.81252 0.82257 0.79427 0.89333 0.88090 0.93161 0.90061 0.90248 0.96532 0.91183 0.93521 0.92841 0.86505 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.92 71.98 0.71 -0.85 16 2 C -0.59 -4.83 6.52 71.98 0.47 -4.36 16 3 S 2.42 43.97 4.77 -56.49 -0.27 43.70 16 4 O -0.98 -26.16 18.10 -127.37 -2.30 -28.47 16 5 O -0.96 -22.44 17.12 -127.37 -2.18 -24.62 16 6 C -0.61 -11.70 4.54 31.02 0.14 -11.56 16 7 C 0.14 4.06 8.33 83.18 0.69 4.75 16 8 N -1.05 -32.17 4.29 -549.53 -2.36 -34.53 16 9 S 2.81 109.65 6.64 -56.49 -0.37 109.27 16 10 O -1.01 -48.13 16.70 -128.00 -2.14 -50.27 16 11 O -1.00 -39.14 17.21 -128.00 -2.20 -41.34 16 12 N -0.99 -39.19 3.12 -520.42 -1.62 -40.81 16 13 C 0.10 3.12 9.28 127.77 1.19 4.30 16 14 C 0.27 12.97 2.62 44.24 0.12 13.09 16 15 H 0.02 1.16 6.91 -2.39 -0.02 1.14 16 16 C -0.14 -6.57 8.97 71.98 0.65 -5.93 16 17 C -0.53 -25.36 7.99 25.60 0.20 -25.15 16 18 H 0.08 3.40 7.33 -2.91 -0.02 3.38 16 19 C 0.02 0.76 5.30 84.65 0.45 1.21 16 20 N -0.92 -50.25 11.32 21.45 0.24 -50.01 16 21 Si 0.96 39.36 29.54 68.60 2.03 41.39 16 22 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 25 C 0.15 2.99 8.29 83.26 0.69 3.68 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.17 0.32 8.14 -2.39 -0.02 0.31 16 30 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.19 2.82 8.14 -2.39 -0.02 2.81 16 32 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.10 2.52 8.11 -2.39 -0.02 2.50 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.08 2.55 7.02 -2.38 -0.02 2.53 16 36 H 0.08 1.99 7.79 -2.39 -0.02 1.97 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 3.66 6.07 -2.39 -0.01 3.65 16 39 H 0.05 2.02 7.67 -2.39 -0.02 2.00 16 40 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.12 2.00 7.32 -2.39 -0.02 1.99 16 42 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -78.38 369.86 -4.86 -83.24 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.01 Total: 13.25 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 5.31 Total: -20.81 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -3.74 Total: -125.35 kcal Atomic # 8 Polarization: -135.87 SS G_CDS: -8.83 Total: -144.70 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 16 Polarization: 153.62 SS G_CDS: -0.64 Total: 152.98 kcal Total: -78.38 -4.86 -83.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332070139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.113 kcal (2) G-P(sol) polarization free energy of solvation -78.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds