Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46494 * 109.46990 * 2 1 4 4 C 1.46505 * 120.00167 * 274.99871 * 3 2 1 5 5 C 1.50696 * 109.47094 * 275.99968 * 4 3 2 6 6 H 1.08000 * 119.99893 * 4.94067 * 5 4 3 7 7 C 1.37876 * 120.00079 * 184.93653 * 5 4 3 8 8 N 1.31519 * 119.99735 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00324 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46978 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47307 * 119.99839 * 9 7 5 12 12 H 1.48497 * 109.47475 * 240.00095 * 9 7 5 13 13 S 1.65608 * 119.99860 * 95.00307 * 3 2 1 14 14 O 1.42098 * 106.40282 * 341.75411 * 13 3 2 15 15 O 1.42101 * 106.39996 * 208.83367 * 13 3 2 16 16 N 1.65597 * 107.21781 * 95.29696 * 13 3 2 17 17 C 1.46498 * 120.00384 * 96.24446 * 16 13 3 18 18 C 1.46504 * 119.99933 * 276.24667 * 16 13 3 19 19 H 1.09002 * 110.01039 * 6.90801 * 18 16 13 20 20 C 1.53881 * 110.02602 * 245.52774 * 18 16 13 21 21 C 1.54164 * 108.70211 * 193.52326 * 20 18 16 22 22 S 1.82925 * 105.08548 * 27.91121 * 21 20 18 23 23 O 1.42098 * 109.35259 * 111.27272 * 22 21 20 24 24 O 1.42094 * 109.35265 * 244.47487 * 22 21 20 25 25 C 1.55045 * 110.02754 * 128.33662 * 18 16 13 26 26 H 1.08992 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46803 * 300.00378 * 1 2 3 28 28 H 1.09001 * 109.47046 * 59.99829 * 1 2 3 29 29 H 1.08997 * 109.46555 * 240.00076 * 2 1 3 30 30 H 1.09001 * 109.47046 * 120.00171 * 2 1 3 31 31 H 1.08999 * 109.46526 * 36.00044 * 4 3 2 32 32 H 1.08998 * 109.46619 * 156.00061 * 4 3 2 33 33 H 0.97001 * 119.99818 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47190 * 270.00127 * 17 16 13 35 35 H 1.09005 * 109.47087 * 29.99782 * 17 16 13 36 36 H 1.09000 * 109.47383 * 149.99509 * 17 16 13 37 37 H 1.09002 * 109.64457 * 73.67377 * 20 18 16 38 38 H 1.08996 * 109.53478 * 313.31319 * 20 18 16 39 39 H 1.08998 * 110.32361 * 269.00756 * 21 20 18 40 40 H 1.09003 * 110.40196 * 146.85133 * 21 20 18 41 41 H 1.08991 * 110.79435 * 43.45495 * 25 18 16 42 42 H 1.09002 * 110.78903 * 279.99268 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4845 1.7699 -1.8944 6 1 4.1208 1.0221 -1.4446 7 6 3.8853 2.4144 -3.0454 8 7 3.1101 3.3245 -3.5934 9 14 5.5288 1.9939 -3.8273 10 1 6.2053 0.9443 -3.0236 11 1 5.3067 1.4933 -5.2076 12 1 6.3809 3.2093 -3.8727 13 16 2.4123 2.1201 1.4288 14 8 1.7864 1.3650 2.4570 15 8 2.1859 3.5099 1.2374 16 7 4.0443 1.9372 1.6416 17 6 4.9600 3.0078 1.2396 18 6 4.5725 0.7048 2.2319 19 1 3.7705 -0.0230 2.3555 20 6 5.2227 1.0090 3.5930 21 6 6.0571 -0.2128 4.0263 22 16 6.5648 -1.0204 2.4654 23 8 7.9673 -0.8711 2.2925 24 8 5.9733 -2.3100 2.3884 25 6 5.6880 0.1189 1.3284 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.3515 1.8229 -1.9388 32 1 2.1100 3.1808 -1.0732 33 1 3.3922 3.7782 -4.4030 34 1 5.2626 2.8570 0.2033 35 1 4.4577 3.9705 1.3350 36 1 5.8410 2.9925 1.8812 37 1 4.4475 1.2047 4.3338 38 1 5.8702 1.8809 3.5009 39 1 5.4504 -0.8928 4.6243 40 1 6.9338 0.1063 4.5898 41 1 6.3558 0.9060 0.9785 42 1 5.2586 -0.4273 0.4885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336897059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -167.358846 kcal Electronic energy + Delta-G solvation = -28027.257769 eV Core-core repulsion = 24067.735825 eV Total energy + Delta-G solvation = -3959.521944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.05562 -38.35591 -38.08205 -37.66260 -37.05590 -36.90654 -34.68806 -34.30272 -31.52112 -30.47756 -28.51541 -27.66251 -25.46046 -24.90759 -23.26550 -22.09649 -20.01149 -19.80860 -18.94474 -18.64718 -18.26531 -17.83662 -17.29796 -17.15560 -16.64076 -16.39663 -15.92109 -15.41169 -15.30299 -15.11322 -14.88966 -14.71897 -14.54252 -13.83869 -13.74062 -13.58890 -13.51534 -13.43539 -13.32721 -13.25754 -13.10312 -13.07845 -12.95165 -12.77893 -12.75519 -12.67445 -12.57613 -12.27714 -12.09501 -11.98034 -11.77594 -11.64557 -11.58817 -11.27999 -10.57752 -10.08025 -9.74579 -8.15261 -6.27951 -0.93761 -0.33146 1.41403 1.45376 1.53924 1.56116 1.94755 2.41876 2.47829 2.66212 3.04287 3.17432 3.32502 3.34271 3.61390 3.72396 3.80975 3.99237 4.04152 4.12569 4.42869 4.47948 4.50085 4.69067 4.69905 4.74468 4.82377 4.87946 4.98687 5.09570 5.10749 5.13514 5.22470 5.28249 5.39480 5.48255 5.60715 5.78863 5.98814 6.13607 6.85518 7.42292 8.93082 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010289 B = 0.005885 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.800611 B = 4756.938649 C = 6077.308424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.997 5.997 4 C 0.261 3.739 5 C -0.532 4.532 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.929 5.929 9 Si 0.950 3.050 10 H -0.255 1.255 11 H -0.288 1.288 12 H -0.282 1.282 13 S 2.791 3.209 14 O -0.996 6.996 15 O -1.012 7.012 16 N -0.985 5.985 17 C 0.075 3.925 18 C 0.143 3.857 19 H 0.117 0.883 20 C -0.130 4.130 21 C -0.557 4.557 22 S 2.394 3.606 23 O -0.973 6.973 24 O -0.973 6.973 25 C -0.605 4.605 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.015 0.985 32 H 0.019 0.981 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.156 0.844 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -6.374 14.983 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.837 5.837 4 C 0.138 3.862 5 C -0.571 4.571 6 H 0.095 0.905 7 C -0.185 4.185 8 N -0.569 5.569 9 Si 0.775 3.225 10 H -0.179 1.179 11 H -0.214 1.214 12 H -0.208 1.208 13 S 2.801 3.199 14 O -0.979 6.979 15 O -0.996 6.996 16 N -0.823 5.823 17 C -0.070 4.070 18 C 0.035 3.965 19 H 0.135 0.865 20 C -0.170 4.170 21 C -0.691 4.691 22 S 2.581 3.419 23 O -0.970 6.970 24 O -0.970 6.970 25 C -0.736 4.736 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.180 0.820 40 H 0.189 0.811 41 H 0.174 0.826 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.299 -6.609 15.211 17.410 hybrid contribution 0.220 0.683 -1.405 1.578 sum 5.519 -5.926 13.805 16.005 Atomic orbital electron populations 1.22192 0.95941 1.03273 1.01305 1.21319 0.94744 0.81493 1.03460 1.57717 1.79147 1.23923 1.22960 1.18708 0.96431 0.90824 0.80262 1.21853 1.03930 1.21979 1.09319 0.90493 1.25735 1.00364 0.94780 0.97663 1.70076 1.38906 1.26693 1.21247 0.85633 0.80051 0.78405 0.78384 1.17858 1.21397 1.20799 1.01479 0.73326 0.72404 0.72698 1.93529 1.74985 1.73105 1.56328 1.93527 1.85036 1.34227 1.86796 1.57560 1.25116 1.24331 1.75323 1.21743 0.95033 0.88543 1.01642 1.21718 0.96766 0.86545 0.91507 0.86472 1.22395 1.01267 0.98104 0.95236 1.30291 1.11954 1.09217 1.17603 1.08686 0.75163 0.76709 0.81338 1.93570 1.30087 1.87634 1.85725 1.93578 1.79277 1.37740 1.86399 1.31108 1.11576 1.17136 1.13738 0.89064 0.93410 0.93441 0.90080 0.89324 0.96680 0.96295 0.92736 0.92579 0.91246 0.86916 0.87079 0.86909 0.82027 0.81133 0.82575 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.92 10.24 71.99 0.74 -4.18 16 2 C 0.12 3.66 6.08 86.38 0.53 4.19 16 3 N -1.00 -38.46 2.83 -519.85 -1.47 -39.93 16 4 C 0.26 12.55 5.45 85.63 0.47 13.02 16 5 C -0.53 -25.94 9.38 25.60 0.24 -25.70 16 6 H 0.08 3.48 7.81 -2.91 -0.02 3.46 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.93 -52.29 13.29 21.45 0.28 -52.00 16 9 Si 0.95 40.38 29.54 68.60 2.03 42.41 16 10 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 13 S 2.79 101.19 6.02 -56.49 -0.34 100.85 16 14 O -1.00 -35.17 15.82 -128.00 -2.02 -37.20 16 15 O -1.01 -44.64 15.32 -128.00 -1.96 -46.60 16 16 N -0.98 -27.37 3.19 -511.29 -1.63 -29.01 16 17 C 0.08 1.97 9.22 127.77 1.18 3.15 16 18 C 0.14 2.97 2.87 45.99 0.13 3.10 16 19 H 0.12 2.30 7.28 -2.39 -0.02 2.29 16 20 C -0.13 -1.67 5.92 31.29 0.19 -1.49 16 21 C -0.56 -5.27 7.26 72.38 0.53 -4.75 16 22 S 2.39 44.21 6.11 -56.49 -0.34 43.86 16 23 O -0.97 -24.50 18.15 -127.49 -2.31 -26.81 16 24 O -0.97 -25.09 18.14 -127.49 -2.31 -27.41 16 25 C -0.60 -12.00 6.72 72.68 0.49 -11.51 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 30 H 0.09 2.37 7.46 -2.39 -0.02 2.35 16 31 H 0.02 0.78 8.11 -2.39 -0.02 0.76 16 32 H 0.02 1.04 6.98 -2.39 -0.02 1.02 16 33 H 0.26 14.12 8.31 -92.71 -0.77 13.34 16 34 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 2.03 7.00 -2.38 -0.02 2.02 16 36 H 0.11 1.83 6.60 -2.39 -0.02 1.82 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.05 6.63 -2.39 -0.02 1.03 16 39 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.17 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.16 2.82 7.09 -2.39 -0.02 2.80 16 42 H 0.14 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -76.90 364.82 -4.13 -81.03 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 1.02 Total: 13.81 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 4.94 Total: -23.00 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -2.82 Total: -120.94 kcal Atomic # 8 Polarization: -129.41 SS G_CDS: -8.61 Total: -138.02 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 16 Polarization: 145.39 SS G_CDS: -0.69 Total: 144.71 kcal Total: -76.90 -4.13 -81.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336897059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.327 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds