Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.50697 * 109.47079 * 85.00200 * 4 3 2 6 6 H 1.08000 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99754 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00085 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47496 * 89.99397 * 9 7 5 11 11 H 1.48492 * 109.47392 * 209.99768 * 9 7 5 12 12 H 1.48508 * 109.47109 * 329.99563 * 9 7 5 13 13 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 14 14 O 1.42099 * 106.40321 * 203.53813 * 13 3 2 15 15 O 1.42097 * 106.40157 * 336.45932 * 13 3 2 16 16 N 1.65600 * 107.21849 * 90.00219 * 13 3 2 17 17 C 1.46497 * 120.00355 * 64.99677 * 16 13 3 18 18 H 1.08998 * 109.38188 * 25.21469 * 17 16 13 19 19 C 1.52587 * 109.38380 * 145.00159 * 17 16 13 20 20 C 1.52593 * 110.64243 * 190.14595 * 19 17 16 21 21 C 1.53045 * 109.98311 * 290.01479 * 20 19 17 22 22 S 1.81668 * 108.99726 * 63.64637 * 21 20 19 23 23 O 1.42106 * 108.66336 * 60.03202 * 22 21 20 24 24 O 1.42109 * 108.66043 * 191.27342 * 22 21 20 25 25 C 1.53041 * 109.38583 * 265.52706 * 17 16 13 26 26 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 31 31 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 32 32 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 33 33 H 0.97003 * 120.00108 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99802 * 245.00228 * 16 13 3 35 35 H 1.08993 * 109.24337 * 310.44638 * 19 17 16 36 36 H 1.09004 * 109.24074 * 69.88695 * 19 17 16 37 37 H 1.08996 * 109.38701 * 50.16783 * 20 19 17 38 38 H 1.08998 * 109.38369 * 169.96168 * 20 19 17 39 39 H 1.08997 * 109.54796 * 183.50079 * 21 20 19 40 40 H 1.08996 * 109.54752 * 303.79307 * 21 20 19 41 41 H 1.09001 * 109.55100 * 296.05026 * 25 17 16 42 42 H 1.08999 * 109.54723 * 56.33945 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8359 2.7289 -1.6354 6 1 -0.0229 2.5942 -0.9945 7 6 0.7222 3.4674 -2.7942 8 7 1.7678 3.6310 -3.5749 9 14 -0.9169 4.2355 -3.2552 10 1 -1.0065 5.5984 -2.6722 11 1 -1.0250 4.3215 -4.7337 12 1 -2.0227 3.3973 -2.7261 13 16 2.4121 2.1202 1.4288 14 8 2.3056 3.5186 1.2000 15 8 1.6869 1.4414 2.4448 16 7 4.0144 1.8138 1.7137 17 6 5.0350 2.3525 0.8114 18 1 4.6476 3.2439 0.3181 19 6 6.2792 2.7189 1.6152 20 6 7.2616 3.5091 0.7556 21 6 7.8781 2.5965 -0.3072 22 16 6.5665 2.0190 -1.4237 23 8 5.9643 3.1487 -2.0405 24 8 7.0884 0.9779 -2.2381 25 6 5.3852 1.3017 -0.2447 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.9079 2.8919 -1.1513 32 1 2.4688 1.4184 -2.0480 33 1 1.6878 4.1503 -4.3903 34 1 4.2772 1.2774 2.4781 35 1 5.9870 3.3229 2.4741 36 1 6.7622 1.8066 1.9652 37 1 6.7362 4.3297 0.2671 38 1 8.0530 3.9116 1.3878 39 1 8.6236 3.1516 -0.8766 40 1 8.3490 1.7405 0.1758 41 1 5.8338 0.4340 0.2389 42 1 4.4807 0.9998 -0.7727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337099700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -147.172298 kcal Electronic energy + Delta-G solvation = -28068.014427 eV Core-core repulsion = 24109.367838 eV Total energy + Delta-G solvation = -3958.646590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.26197 -36.81329 -36.65053 -36.10938 -35.88577 -35.22645 -33.96686 -32.55077 -30.06283 -29.77314 -27.84053 -26.73007 -23.38193 -22.79592 -21.92614 -21.33078 -19.22204 -18.66772 -17.35536 -17.25303 -16.70920 -16.37834 -16.27137 -15.88420 -15.39864 -15.27337 -14.90526 -14.39841 -14.21644 -13.80424 -13.59187 -13.22475 -13.13185 -12.98460 -12.55980 -12.22095 -12.08719 -11.97766 -11.90402 -11.87109 -11.56142 -11.50977 -11.49411 -11.37131 -11.28106 -11.12891 -10.99024 -10.95737 -10.90832 -10.46441 -10.40770 -10.25658 -9.90922 -9.63900 -9.52532 -8.37917 -8.13652 -5.98305 -4.03352 0.00619 1.11941 2.66642 3.36775 3.39622 3.43021 3.45884 3.69791 3.87744 4.01949 4.27300 4.37020 4.49174 4.49487 4.58489 4.78203 4.88800 5.06480 5.10871 5.24285 5.30476 5.38503 5.40748 5.51160 5.62548 5.71942 5.81693 5.84838 5.90138 6.02330 6.15197 6.38384 6.66206 6.97942 6.99887 7.19095 7.39542 7.59428 7.96645 8.24501 8.97771 9.61269 11.09502 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011338 B = 0.005644 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.898701 B = 4960.156464 C = 6230.037479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.994 5.994 4 C 0.250 3.750 5 C -0.530 4.530 6 H 0.063 0.937 7 C 0.063 3.937 8 N -0.886 5.886 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.274 1.274 13 S 2.774 3.226 14 O -0.959 6.959 15 O -0.993 6.993 16 N -1.123 6.123 17 C 0.167 3.833 18 H 0.116 0.884 19 C -0.143 4.143 20 C -0.110 4.110 21 C -0.611 4.611 22 S 2.414 3.586 23 O -0.907 6.907 24 O -0.943 6.943 25 C -0.635 4.635 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.227 -5.913 10.377 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.008 3.992 3 N -0.837 5.837 4 C 0.128 3.872 5 C -0.569 4.569 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.524 5.524 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.782 3.218 14 O -0.942 6.942 15 O -0.978 6.978 16 N -0.880 5.880 17 C 0.058 3.942 18 H 0.134 0.866 19 C -0.182 4.182 20 C -0.149 4.149 21 C -0.740 4.740 22 S 2.593 3.407 23 O -0.904 6.904 24 O -0.939 6.939 25 C -0.765 4.765 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.243 0.757 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.601 -5.144 9.662 16.692 hybrid contribution -0.419 -0.270 0.505 0.710 sum 12.182 -5.414 10.168 16.766 Atomic orbital electron populations 1.22252 0.96237 1.00852 1.03778 1.20978 0.95054 0.82103 1.01093 1.57819 1.78363 1.23140 1.24408 1.19187 0.98181 0.91018 0.78779 1.21418 0.96127 1.32409 1.06985 0.91873 1.24945 0.96714 0.96023 0.96314 1.69936 1.28984 1.40013 1.13492 0.86576 0.83982 0.79951 0.77362 1.20510 1.21240 1.19922 1.02233 0.72574 0.74096 0.72896 1.93645 1.85019 1.30239 1.85270 1.93555 1.69797 1.76271 1.58137 1.56366 1.25460 1.68369 1.37781 1.20412 0.90147 0.94734 0.88923 0.86635 1.22006 0.94385 1.01914 0.99878 1.21254 0.99247 0.97916 0.96454 1.30346 1.18219 1.10747 1.14672 1.08314 0.78202 0.76605 0.77539 1.93720 1.74830 1.50186 1.71712 1.93589 1.78912 1.57765 1.63669 1.31010 1.18991 1.11256 1.15294 0.90124 0.93110 0.92853 0.92108 0.91016 0.94052 0.94799 0.92601 0.75698 0.88704 0.90165 0.88912 0.89066 0.84739 0.85095 0.84398 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.83 37.16 0.37 -2.62 16 2 C 0.13 2.23 6.09 -4.04 -0.02 2.21 16 3 N -0.99 -19.52 2.42 -115.66 -0.28 -19.80 16 4 C 0.25 6.02 4.01 -5.19 -0.02 6.00 16 5 C -0.53 -14.53 8.41 -34.44 -0.29 -14.82 16 6 H 0.06 1.72 6.89 -52.49 -0.36 1.36 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 S 2.77 51.79 6.03 -107.50 -0.65 51.14 16 14 O -0.96 -21.96 16.44 -57.17 -0.94 -22.90 16 15 O -0.99 -19.54 17.11 -57.17 -0.98 -20.52 16 16 N -1.12 -14.37 5.52 -5.06 -0.03 -14.40 16 17 C 0.17 2.04 2.64 -68.12 -0.18 1.86 16 18 H 0.12 1.72 7.00 -51.93 -0.36 1.35 16 19 C -0.14 -1.13 5.14 -27.15 -0.14 -1.27 16 20 C -0.11 -0.83 5.73 -26.92 -0.15 -0.98 16 21 C -0.61 -4.62 6.35 37.18 0.24 -4.38 16 22 S 2.41 30.75 5.30 -107.50 -0.57 30.18 16 23 O -0.91 -16.29 17.93 -57.82 -1.04 -17.33 16 24 O -0.94 -14.67 18.11 -57.82 -1.05 -15.71 16 25 C -0.64 -7.31 5.95 37.18 0.22 -7.09 16 26 H 0.08 1.58 6.59 -51.93 -0.34 1.24 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.85 7.61 -51.93 -0.40 0.46 16 30 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 31 H 0.04 1.06 7.25 -51.93 -0.38 0.68 16 32 H 0.03 0.83 8.00 -51.93 -0.42 0.41 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.41 3.83 8.83 -34.47 -0.30 3.53 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 37 H 0.09 0.81 8.01 -51.93 -0.42 0.40 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.13 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.15 2.02 6.51 -51.93 -0.34 1.68 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -38.96 360.71 -10.70 -49.66 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.24 Total: 2.08 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -0.08 Total: -19.41 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.43 Total: -59.54 kcal Atomic # 8 Polarization: -72.45 SS G_CDS: -4.00 Total: -76.46 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 82.54 SS G_CDS: -1.22 Total: 81.32 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -38.96 -10.70 -49.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337099700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.509 kcal (2) G-P(sol) polarization free energy of solvation -38.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds