Wall clock time and date at job start Sat Apr 11 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.46502 * 120.00345 * 275.00289 * 3 2 1 5 5 C 1.50697 * 109.47079 * 85.00200 * 4 3 2 6 6 H 1.08000 * 119.99936 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99754 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00085 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47496 * 89.99397 * 9 7 5 11 11 H 1.48492 * 109.47392 * 209.99768 * 9 7 5 12 12 H 1.48508 * 109.47109 * 329.99563 * 9 7 5 13 13 S 1.65605 * 119.99782 * 95.00317 * 3 2 1 14 14 O 1.42099 * 106.40321 * 203.53813 * 13 3 2 15 15 O 1.42097 * 106.40157 * 336.45932 * 13 3 2 16 16 N 1.65600 * 107.21849 * 90.00219 * 13 3 2 17 17 C 1.46497 * 120.00355 * 64.99677 * 16 13 3 18 18 H 1.08998 * 109.38188 * 25.21469 * 17 16 13 19 19 C 1.52587 * 109.38380 * 145.00159 * 17 16 13 20 20 C 1.52593 * 110.64243 * 190.14595 * 19 17 16 21 21 C 1.53045 * 109.98311 * 290.01479 * 20 19 17 22 22 S 1.81668 * 108.99726 * 63.64637 * 21 20 19 23 23 O 1.42106 * 108.66336 * 60.03202 * 22 21 20 24 24 O 1.42109 * 108.66043 * 191.27342 * 22 21 20 25 25 C 1.53041 * 109.38583 * 265.52706 * 17 16 13 26 26 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 31 31 H 1.08998 * 109.47222 * 205.00373 * 4 3 2 32 32 H 1.09000 * 109.46517 * 324.99960 * 4 3 2 33 33 H 0.97003 * 120.00108 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99802 * 245.00228 * 16 13 3 35 35 H 1.08993 * 109.24337 * 310.44638 * 19 17 16 36 36 H 1.09004 * 109.24074 * 69.88695 * 19 17 16 37 37 H 1.08996 * 109.38701 * 50.16783 * 20 19 17 38 38 H 1.08998 * 109.38369 * 169.96168 * 20 19 17 39 39 H 1.08997 * 109.54796 * 183.50079 * 21 20 19 40 40 H 1.08996 * 109.54752 * 303.79307 * 21 20 19 41 41 H 1.09001 * 109.55100 * 296.05026 * 25 17 16 42 42 H 1.08999 * 109.54723 * 56.33945 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 0.8359 2.7289 -1.6354 6 1 -0.0229 2.5942 -0.9945 7 6 0.7222 3.4674 -2.7942 8 7 1.7678 3.6310 -3.5749 9 14 -0.9169 4.2355 -3.2552 10 1 -1.0065 5.5984 -2.6722 11 1 -1.0250 4.3215 -4.7337 12 1 -2.0227 3.3973 -2.7261 13 16 2.4121 2.1202 1.4288 14 8 2.3056 3.5186 1.2000 15 8 1.6869 1.4414 2.4448 16 7 4.0144 1.8138 1.7137 17 6 5.0350 2.3525 0.8114 18 1 4.6476 3.2439 0.3181 19 6 6.2792 2.7189 1.6152 20 6 7.2616 3.5091 0.7556 21 6 7.8781 2.5965 -0.3072 22 16 6.5665 2.0190 -1.4237 23 8 5.9643 3.1487 -2.0405 24 8 7.0884 0.9779 -2.2381 25 6 5.3852 1.3017 -0.2447 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 2.9079 2.8919 -1.1513 32 1 2.4688 1.4184 -2.0480 33 1 1.6878 4.1503 -4.3903 34 1 4.2772 1.2774 2.4781 35 1 5.9870 3.3229 2.4741 36 1 6.7622 1.8066 1.9652 37 1 6.7362 4.3297 0.2671 38 1 8.0530 3.9116 1.3878 39 1 8.6236 3.1516 -0.8766 40 1 8.3490 1.7405 0.1758 41 1 5.8338 0.4340 0.2389 42 1 4.4807 0.9998 -0.7727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337099700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:16 Heat of formation + Delta-G solvation = -181.563815 kcal Electronic energy + Delta-G solvation = -28069.505756 eV Core-core repulsion = 24109.367838 eV Total energy + Delta-G solvation = -3960.137918 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.17268 -38.24999 -37.89213 -37.71336 -37.00602 -36.85892 -34.83209 -34.63263 -31.48816 -30.93910 -28.71004 -28.52860 -24.70226 -24.21115 -23.45095 -22.15360 -20.53757 -19.71886 -18.90236 -18.58107 -18.20923 -18.00793 -17.33828 -17.13353 -16.74656 -16.39521 -16.03153 -15.91872 -15.31282 -15.13422 -14.78325 -14.65378 -14.36691 -14.02697 -13.86951 -13.70166 -13.45974 -13.29185 -13.15578 -13.15251 -13.05352 -13.02116 -12.99432 -12.83558 -12.78243 -12.35659 -12.29298 -12.21802 -12.13393 -11.91197 -11.82496 -11.63997 -11.49460 -11.05746 -10.69693 -10.55329 -9.83998 -8.15073 -6.26886 -0.92818 -0.35525 1.37635 1.40497 1.49284 1.73918 2.04119 2.41158 2.62274 2.78201 3.00106 3.15051 3.38696 3.50094 3.61723 3.78312 3.81894 3.94853 4.02941 4.26399 4.32529 4.45956 4.47000 4.55887 4.70166 4.71030 4.79778 4.91301 4.96403 5.06165 5.17230 5.17625 5.20852 5.32072 5.46034 5.57701 5.74617 5.90196 6.14460 6.21848 6.81338 7.41091 8.91693 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011338 B = 0.005644 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.898701 B = 4960.156464 C = 6230.037479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.999 5.999 4 C 0.269 3.731 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.281 1.281 11 H -0.277 1.277 12 H -0.264 1.264 13 S 2.787 3.213 14 O -1.009 7.009 15 O -1.003 7.003 16 N -1.097 6.097 17 C 0.156 3.844 18 H 0.075 0.925 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.569 4.569 22 S 2.389 3.611 23 O -0.983 6.983 24 O -0.983 6.983 25 C -0.632 4.632 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.019 0.981 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.432 0.568 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.068 0.932 38 H 0.133 0.867 39 H 0.154 0.846 40 H 0.179 0.821 41 H 0.189 0.811 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.214 -7.465 13.130 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.002 4.002 3 N -0.840 5.840 4 C 0.145 3.855 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.207 1.207 11 H -0.203 1.203 12 H -0.188 1.188 13 S 2.796 3.204 14 O -0.992 6.992 15 O -0.987 6.987 16 N -0.861 5.861 17 C 0.047 3.953 18 H 0.093 0.907 19 C -0.178 4.178 20 C -0.155 4.155 21 C -0.703 4.703 22 S 2.577 3.423 23 O -0.980 6.980 24 O -0.980 6.980 25 C -0.763 4.763 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.270 0.730 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.087 0.913 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.197 0.803 41 H 0.206 0.794 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.533 -6.744 12.394 20.255 hybrid contribution -0.944 0.172 -0.212 0.982 sum 13.589 -6.571 12.182 19.397 Atomic orbital electron populations 1.22232 0.96837 1.02482 1.01515 1.21299 0.94693 0.80798 1.03407 1.57686 1.79363 1.24109 1.22874 1.18656 0.95969 0.90409 0.80428 1.21821 0.97291 1.32175 1.06773 0.92355 1.25760 0.99984 0.96748 0.96538 1.70063 1.30914 1.41078 1.13988 0.85665 0.80344 0.78888 0.77468 1.20666 1.20268 1.18789 1.01551 0.73697 0.72935 0.72258 1.93586 1.86308 1.33488 1.85829 1.93532 1.71109 1.76041 1.58013 1.55688 1.23300 1.68540 1.38541 1.20627 0.91699 0.93480 0.89478 0.90687 1.22105 0.92158 1.04331 0.99228 1.21409 1.00139 0.97272 0.96695 1.30048 1.14817 1.12600 1.12824 1.08558 0.79561 0.75281 0.78930 1.93636 1.77227 1.52153 1.74960 1.93528 1.79419 1.58605 1.66482 1.30940 1.17900 1.12843 1.14598 0.93151 0.89588 0.94210 0.88626 0.89775 0.96312 0.95857 0.92646 0.73002 0.87687 0.85504 0.91295 0.84895 0.82772 0.80290 0.79352 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 9.83 71.98 0.71 -5.16 16 2 C 0.12 3.99 6.09 86.38 0.53 4.52 16 3 N -1.00 -39.98 2.42 -519.85 -1.26 -41.24 16 4 C 0.27 13.67 4.01 85.63 0.34 14.02 16 5 C -0.54 -30.96 8.41 25.60 0.22 -30.75 16 6 H 0.06 3.31 6.89 -2.91 -0.02 3.29 16 7 C 0.01 0.54 5.46 84.65 0.46 1.01 16 8 N -0.92 -56.82 13.29 21.45 0.28 -56.54 16 9 Si 0.95 46.24 29.54 68.60 2.03 48.27 16 10 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.26 -12.23 7.11 99.48 0.71 -11.53 16 13 S 2.79 104.35 6.03 -56.49 -0.34 104.01 16 14 O -1.01 -48.13 16.44 -128.00 -2.10 -50.23 16 15 O -1.00 -38.38 17.11 -128.00 -2.19 -40.57 16 16 N -1.10 -26.07 5.52 -169.91 -0.94 -27.01 16 17 C 0.16 3.61 2.64 44.87 0.12 3.73 16 18 H 0.07 2.38 7.00 -2.39 -0.02 2.37 16 19 C -0.14 -1.60 5.14 30.32 0.16 -1.45 16 20 C -0.12 -1.30 5.73 30.47 0.17 -1.13 16 21 C -0.57 -6.29 6.35 72.00 0.46 -5.83 16 22 S 2.39 61.50 5.30 -56.49 -0.30 61.20 16 23 O -0.98 -38.60 17.93 -127.39 -2.28 -40.89 16 24 O -0.98 -31.15 18.11 -127.39 -2.31 -33.46 16 25 C -0.63 -13.87 5.95 72.00 0.43 -13.44 16 26 H 0.05 2.01 6.59 -2.39 -0.02 1.99 16 27 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 2.44 7.61 -2.39 -0.02 2.42 16 30 H 0.08 2.51 8.00 -2.39 -0.02 2.49 16 31 H 0.02 1.05 7.25 -2.39 -0.02 1.03 16 32 H 0.02 1.22 8.00 -2.39 -0.02 1.20 16 33 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.43 6.46 8.83 -96.74 -0.85 5.60 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.13 0.36 8.09 -2.38 -0.02 0.34 16 37 H 0.07 1.15 8.01 -2.39 -0.02 1.14 16 38 H 0.13 0.59 8.14 -2.39 -0.02 0.58 16 39 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.18 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.19 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.12 3.41 6.51 -2.39 -0.02 3.40 16 Total: -1.00 -93.04 360.71 -5.65 -98.69 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.18 Total: 12.25 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 3.59 Total: -34.48 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -1.91 Total: -124.78 kcal Atomic # 8 Polarization: -156.27 SS G_CDS: -8.89 Total: -165.15 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 165.85 SS G_CDS: -0.64 Total: 165.21 kcal Total: -93.04 -5.65 -98.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337099700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.876 kcal (2) G-P(sol) polarization free energy of solvation -93.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds