Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35900 * 117.00370 * 2 1 4 4 C 1.38752 * 120.05357 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93970 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.06035 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94382 * 180.02562 * 6 5 4 8 8 S 1.81400 * 109.47353 * 90.00212 * 7 6 5 9 9 C 1.81401 * 103.00348 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47244 * 179.97438 * 9 8 7 11 11 O 1.21291 * 119.99775 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99847 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00123 * 0.02562 * 12 10 9 14 14 C 1.37103 * 119.99747 * 179.97438 * 12 10 9 15 15 H 1.07999 * 119.99718 * 24.39390 * 14 12 10 16 16 C 1.38944 * 119.99838 * 204.39080 * 14 12 10 17 17 N 1.31410 * 120.00145 * 12.66924 * 16 14 12 18 18 Si 1.86802 * 119.99877 * 192.66689 * 16 14 12 19 19 H 1.48500 * 109.47300 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46814 * 120.00021 * 18 16 14 21 21 H 1.48497 * 109.47148 * 239.99981 * 18 16 14 22 22 C 1.38243 * 120.10989 * 0.02562 * 6 5 4 23 23 C 1.38168 * 120.05559 * 359.74812 * 22 6 5 24 24 N 1.48006 * 120.02632 * 180.25650 * 23 22 6 25 25 O 1.21795 * 120.00127 * 0.22582 * 24 23 22 26 26 O 1.21794 * 119.99559 * 180.22758 * 24 23 22 27 27 H 1.09000 * 109.47490 * 300.00165 * 1 2 3 28 28 H 1.09009 * 109.46970 * 59.99983 * 1 2 3 29 29 H 1.08996 * 109.47607 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.02791 * 359.97438 * 4 3 2 31 31 H 1.08008 * 119.96722 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.47362 * 210.00128 * 7 6 5 33 33 H 1.09003 * 109.47610 * 329.99904 * 7 6 5 34 34 H 1.08995 * 109.46864 * 299.99869 * 9 8 7 35 35 H 1.08993 * 109.46986 * 59.99928 * 9 8 7 36 36 H 1.09004 * 109.47034 * 85.86774 * 13 12 10 37 37 H 1.09002 * 109.47219 * 205.86774 * 13 12 10 38 38 H 1.08995 * 109.47472 * 325.86592 * 13 12 10 39 39 H 0.97003 * 119.99590 * 179.97438 * 17 16 14 40 40 H 1.08000 * 119.97280 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6046 0.0011 6 6 3.3021 3.6756 0.0016 7 6 3.9862 5.0183 0.0028 8 16 4.2602 5.5559 1.7135 9 6 5.0793 7.1617 1.5105 10 6 5.3777 7.7484 2.8661 11 8 5.0678 7.1430 3.8704 12 7 5.9889 8.9458 2.9625 13 6 6.3627 9.6771 1.7494 14 6 6.2599 9.4797 4.1958 15 1 6.3618 8.8321 5.0541 16 6 6.4034 10.8540 4.3415 17 7 6.0395 11.6595 3.3690 18 14 7.1137 11.5568 5.9198 19 1 7.4429 10.4481 6.8513 20 1 8.3467 12.3242 5.6091 21 1 6.1170 12.4569 6.5535 22 6 4.0560 2.5169 0.0011 23 6 3.4311 1.2847 0.0053 24 7 4.2390 0.0445 0.0104 25 8 5.4552 0.1100 0.0151 26 8 3.6875 -1.0414 0.0099 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2129 2.3203 0.0005 31 1 1.3341 4.5113 0.0011 32 1 4.9444 4.9384 -0.5108 33 1 3.3584 5.7466 -0.5108 34 1 6.0101 7.0276 0.9593 35 1 4.4245 7.8364 0.9591 36 1 5.5145 10.2699 1.4068 37 1 7.2027 10.3367 1.9672 38 1 6.6489 8.9690 0.9718 39 1 6.1394 12.6189 3.4710 40 1 5.1345 2.5749 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337523968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -34.064289 kcal Electronic energy + Delta-G solvation = -25831.969127 eV Core-core repulsion = 21742.783317 eV Total energy + Delta-G solvation = -4089.185810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27321 -40.65858 -38.52438 -38.41472 -36.47489 -34.78445 -33.04846 -32.16240 -31.82925 -29.42029 -28.52495 -27.06923 -26.40698 -26.19762 -24.28507 -22.94946 -22.04458 -19.63540 -19.19656 -18.73131 -18.17483 -17.61539 -16.98803 -16.85423 -16.33609 -16.21491 -16.02658 -15.20422 -15.12783 -14.96897 -14.63618 -14.48329 -14.16924 -13.68102 -13.25146 -13.05117 -12.74712 -12.52232 -12.50880 -12.25556 -11.98256 -11.65927 -11.55894 -11.54681 -11.41791 -11.30015 -11.10583 -11.09329 -10.96356 -10.38858 -10.36535 -10.02707 -9.81625 -9.10651 -8.84415 -8.60142 -7.78374 -7.44182 -6.42223 -3.98517 -0.29106 0.45019 1.14923 1.30399 1.78614 2.45366 2.69982 3.01703 3.09725 3.21200 3.28582 3.73131 3.88683 4.02563 4.06952 4.19718 4.43271 4.50404 4.57762 4.61126 4.74706 4.83200 4.98747 5.00900 5.06984 5.15771 5.30023 5.41667 5.48310 5.52251 5.74002 5.75415 5.84837 6.19952 6.22328 6.55126 6.71393 7.06482 7.48718 7.64566 8.01548 8.36776 9.07201 9.28896 9.83365 10.62941 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.002029 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.506238 B =13795.482959 C =14115.479404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.283 6.283 3 C 0.194 3.806 4 C -0.212 4.212 5 C -0.009 4.009 6 C -0.096 4.096 7 C -0.076 4.076 8 S -0.172 6.172 9 C -0.110 4.110 10 C 0.459 3.541 11 O -0.570 6.570 12 N -0.440 5.440 13 C 0.110 3.890 14 C -0.305 4.305 15 H 0.100 0.900 16 C 0.031 3.969 17 N -0.882 5.882 18 Si 0.928 3.072 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.003 4.003 23 C -0.080 4.080 24 N 0.038 4.962 25 O -0.176 6.176 26 O -0.143 6.143 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.025 0.975 39 H 0.268 0.732 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 -14.768 -13.661 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.193 6.193 3 C 0.144 3.856 4 C -0.231 4.231 5 C -0.029 4.029 6 C -0.099 4.099 7 C -0.223 4.223 8 S 0.057 5.943 9 C -0.261 4.261 10 C 0.245 3.755 11 O -0.454 6.454 12 N -0.160 5.160 13 C -0.034 4.034 14 C -0.433 4.433 15 H 0.118 0.882 16 C -0.173 4.173 17 N -0.521 5.521 18 Si 0.754 3.246 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.024 4.024 23 C -0.164 4.164 24 N 0.556 4.444 25 O -0.387 6.387 26 O -0.362 6.362 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.357 -14.905 -12.246 22.385 hybrid contribution 0.619 1.236 -0.619 1.515 sum -10.737 -13.669 -12.865 21.625 Atomic orbital electron populations 1.23317 0.77116 1.05243 1.01920 1.86411 1.22349 1.24429 1.86144 1.18684 0.89421 0.86492 0.91005 1.21289 1.01065 0.90771 1.09946 1.21343 0.93820 0.98174 0.89551 1.19084 0.93238 0.93276 1.04254 1.22387 1.03654 0.95579 1.00695 1.87749 1.78632 1.23223 1.04732 1.23582 1.03199 0.96776 1.02582 1.19174 0.83188 0.84770 0.88330 1.90569 1.56041 1.61530 1.37211 1.43502 1.49504 1.16070 1.06905 1.21523 1.01874 0.94732 0.85288 1.19713 1.46049 0.90754 0.86772 0.88220 1.25375 0.96905 0.95966 0.99021 1.69993 1.45025 1.04010 1.33044 0.85833 0.78480 0.78968 0.81285 1.19104 1.20573 1.20656 1.20830 1.02388 0.88281 0.90930 1.20428 0.88114 0.85821 1.22087 1.43281 1.01163 1.02314 0.97668 1.94549 0.95526 1.93913 1.54664 1.94567 1.74338 1.14798 1.52518 0.91785 0.91943 0.87078 0.82910 0.83273 0.88747 0.88619 0.88689 0.88550 0.92843 0.90414 0.95685 0.92183 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.28 -2.73 8.51 -41.55 -0.35 -3.09 16 3 C 0.19 1.95 6.67 -39.22 -0.26 1.69 16 4 C -0.21 -1.56 9.04 -39.43 -0.36 -1.92 16 5 C -0.01 -0.07 9.69 -39.61 -0.38 -0.46 16 6 C -0.10 -0.93 5.14 -104.61 -0.54 -1.47 16 7 C -0.08 -0.76 6.07 36.00 0.22 -0.54 16 8 S -0.17 -2.75 20.86 -107.50 -2.24 -4.99 16 9 C -0.11 -1.90 5.03 36.01 0.18 -1.71 16 10 C 0.46 10.95 7.65 -10.99 -0.08 10.86 16 11 O -0.57 -15.77 15.58 5.55 0.09 -15.68 16 12 N -0.44 -11.00 3.01 -122.20 -0.37 -11.37 16 13 C 0.11 2.32 8.44 59.84 0.51 2.83 16 14 C -0.30 -8.36 9.24 -14.93 -0.14 -8.50 16 15 H 0.10 2.89 7.45 -52.49 -0.39 2.50 16 16 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 17 N -0.88 -22.91 10.83 55.50 0.60 -22.31 16 18 Si 0.93 20.41 29.57 -169.99 -5.03 15.38 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.00 -0.04 9.20 -39.61 -0.36 -0.40 16 23 C -0.08 -0.96 6.87 -79.81 -0.55 -1.51 16 24 N 0.04 0.54 4.45 34.03 0.15 0.69 16 25 O -0.18 -2.65 18.45 -29.46 -0.54 -3.20 16 26 O -0.14 -2.14 17.24 -36.49 -0.63 -2.76 16 27 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.06 0.19 7.66 -51.92 -0.40 -0.21 16 29 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.15 0.64 6.30 -52.49 -0.33 0.31 16 31 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 32 H 0.09 0.83 8.08 -51.92 -0.42 0.41 16 33 H 0.10 0.78 8.08 -51.92 -0.42 0.36 16 34 H 0.09 1.42 7.41 -51.93 -0.38 1.03 16 35 H 0.10 1.48 8.11 -51.93 -0.42 1.06 16 36 H 0.05 1.15 7.83 -51.93 -0.41 0.74 16 37 H 0.08 1.75 6.80 -51.93 -0.35 1.40 16 38 H 0.02 0.42 6.61 -51.93 -0.34 0.08 16 39 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 40 H 0.16 1.66 7.61 -52.49 -0.40 1.26 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -34.34 361.83 -8.38 -42.72 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.64 Total: -1.51 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.87 Total: 0.65 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.38 Total: -32.98 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -1.44 Total: -24.73 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.24 Total: -4.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.34 -8.38 -42.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337523968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.659 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds