Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35900 * 117.00370 * 2 1 4 4 C 1.38752 * 120.05357 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93970 * 179.97438 * 4 3 2 6 6 C 1.38283 * 120.06035 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94382 * 180.02562 * 6 5 4 8 8 S 1.81400 * 109.47353 * 90.00212 * 7 6 5 9 9 C 1.81401 * 103.00348 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47244 * 179.97438 * 9 8 7 11 11 O 1.21291 * 119.99775 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99847 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00123 * 0.02562 * 12 10 9 14 14 C 1.37103 * 119.99747 * 179.97438 * 12 10 9 15 15 H 1.07999 * 119.99718 * 24.39390 * 14 12 10 16 16 C 1.38944 * 119.99838 * 204.39080 * 14 12 10 17 17 N 1.31410 * 120.00145 * 12.66924 * 16 14 12 18 18 Si 1.86802 * 119.99877 * 192.66689 * 16 14 12 19 19 H 1.48500 * 109.47300 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46814 * 120.00021 * 18 16 14 21 21 H 1.48497 * 109.47148 * 239.99981 * 18 16 14 22 22 C 1.38243 * 120.10989 * 0.02562 * 6 5 4 23 23 C 1.38168 * 120.05559 * 359.74812 * 22 6 5 24 24 N 1.48006 * 120.02632 * 180.25650 * 23 22 6 25 25 O 1.21795 * 120.00127 * 0.22582 * 24 23 22 26 26 O 1.21794 * 119.99559 * 180.22758 * 24 23 22 27 27 H 1.09000 * 109.47490 * 300.00165 * 1 2 3 28 28 H 1.09009 * 109.46970 * 59.99983 * 1 2 3 29 29 H 1.08996 * 109.47607 * 179.97438 * 1 2 3 30 30 H 1.07993 * 120.02791 * 359.97438 * 4 3 2 31 31 H 1.08008 * 119.96722 * 179.97438 * 5 4 3 32 32 H 1.09007 * 109.47362 * 210.00128 * 7 6 5 33 33 H 1.09003 * 109.47610 * 329.99904 * 7 6 5 34 34 H 1.08995 * 109.46864 * 299.99869 * 9 8 7 35 35 H 1.08993 * 109.46986 * 59.99928 * 9 8 7 36 36 H 1.09004 * 109.47034 * 85.86774 * 13 12 10 37 37 H 1.09002 * 109.47219 * 205.86774 * 13 12 10 38 38 H 1.08995 * 109.47472 * 325.86592 * 13 12 10 39 39 H 0.97003 * 119.99590 * 179.97438 * 17 16 14 40 40 H 1.08000 * 119.97280 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6046 0.0011 6 6 3.3021 3.6756 0.0016 7 6 3.9862 5.0183 0.0028 8 16 4.2602 5.5559 1.7135 9 6 5.0793 7.1617 1.5105 10 6 5.3777 7.7484 2.8661 11 8 5.0678 7.1430 3.8704 12 7 5.9889 8.9458 2.9625 13 6 6.3627 9.6771 1.7494 14 6 6.2599 9.4797 4.1958 15 1 6.3618 8.8321 5.0541 16 6 6.4034 10.8540 4.3415 17 7 6.0395 11.6595 3.3690 18 14 7.1137 11.5568 5.9198 19 1 7.4429 10.4481 6.8513 20 1 8.3467 12.3242 5.6091 21 1 6.1170 12.4569 6.5535 22 6 4.0560 2.5169 0.0011 23 6 3.4311 1.2847 0.0053 24 7 4.2390 0.0445 0.0104 25 8 5.4552 0.1100 0.0151 26 8 3.6875 -1.0414 0.0099 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2129 2.3203 0.0005 31 1 1.3341 4.5113 0.0011 32 1 4.9444 4.9384 -0.5108 33 1 3.3584 5.7466 -0.5108 34 1 6.0101 7.0276 0.9593 35 1 4.4245 7.8364 0.9591 36 1 5.5145 10.2699 1.4068 37 1 7.2027 10.3367 1.9672 38 1 6.6489 8.9690 0.9718 39 1 6.1394 12.6189 3.4710 40 1 5.1345 2.5749 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337523968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -54.339672 kcal Electronic energy + Delta-G solvation = -25832.848334 eV Core-core repulsion = 21742.783317 eV Total energy + Delta-G solvation = -4090.065016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.25332 -41.38969 -40.30682 -39.15868 -37.54342 -36.71070 -33.84796 -33.75008 -32.85482 -30.95345 -29.06883 -28.08030 -27.88980 -27.09319 -26.14361 -23.70592 -22.85781 -21.15080 -20.26839 -19.75274 -18.94436 -18.87728 -18.62665 -17.96357 -17.55440 -17.30123 -16.88657 -16.66573 -16.33453 -15.93797 -15.78010 -15.74613 -15.20380 -14.69211 -14.43771 -14.28029 -13.76795 -13.70546 -13.50933 -13.30232 -13.16816 -13.13967 -12.90065 -12.68092 -12.66126 -12.62437 -12.38648 -12.25631 -12.16590 -12.09409 -12.02872 -11.05142 -10.92099 -10.71179 -10.49890 -9.71215 -9.58400 -8.64835 -8.38500 -6.03175 -1.19709 -0.32313 0.24015 0.39710 0.73176 1.34107 1.40625 1.54034 1.62953 1.88215 1.94844 2.25647 2.29663 3.02689 3.04774 3.17226 3.41011 3.55100 3.71457 3.83182 3.94899 4.13092 4.16361 4.27279 4.34025 4.35254 4.40361 4.49954 4.62234 4.64975 4.69911 4.81988 5.00580 5.05216 5.15422 5.29661 5.34759 5.42246 5.94211 6.05110 6.42775 6.53606 7.12062 7.39734 7.95467 8.64808 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.002029 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.506238 B =13795.482959 C =14115.479404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 O -0.307 6.307 3 C 0.193 3.807 4 C -0.200 4.200 5 C 0.004 3.996 6 C -0.105 4.105 7 C -0.050 4.050 8 S -0.240 6.240 9 C -0.092 4.092 10 C 0.447 3.553 11 O -0.619 6.619 12 N -0.458 5.458 13 C 0.118 3.882 14 C -0.343 4.343 15 H 0.068 0.932 16 C 0.000 4.000 17 N -0.893 5.893 18 Si 0.988 3.012 19 H -0.276 1.276 20 H -0.264 1.264 21 H -0.275 1.275 22 C -0.010 4.010 23 C -0.107 4.107 24 N 0.040 4.960 25 O -0.208 6.208 26 O -0.162 6.162 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.191 0.809 31 H 0.181 0.819 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.275 0.725 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.575 -13.698 -15.529 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.218 6.218 3 C 0.143 3.857 4 C -0.219 4.219 5 C -0.015 4.015 6 C -0.108 4.108 7 C -0.197 4.197 8 S -0.012 6.012 9 C -0.243 4.243 10 C 0.235 3.765 11 O -0.506 6.506 12 N -0.178 5.178 13 C -0.025 4.025 14 C -0.471 4.471 15 H 0.086 0.914 16 C -0.202 4.202 17 N -0.531 5.531 18 Si 0.811 3.189 19 H -0.201 1.201 20 H -0.188 1.188 21 H -0.200 1.200 22 C -0.031 4.031 23 C -0.193 4.193 24 N 0.551 4.449 25 O -0.413 6.413 26 O -0.380 6.380 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.141 0.859 30 H 0.208 0.792 31 H 0.198 0.802 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.196 -13.833 -14.149 23.784 hybrid contribution 1.016 0.835 -0.093 1.318 sum -12.180 -12.998 -14.242 22.806 Atomic orbital electron populations 1.23698 0.74535 1.06818 1.03667 1.86396 1.25087 1.24652 1.85666 1.18954 0.88853 0.87705 0.90205 1.21701 1.02677 0.89371 1.08119 1.21775 0.93177 0.99567 0.87024 1.19144 0.94130 0.92439 1.05092 1.22407 1.05337 0.96013 0.95938 1.87981 1.78814 1.22988 1.11383 1.23330 1.05186 0.97395 0.98354 1.20223 0.81703 0.83985 0.90542 1.90530 1.57594 1.62695 1.39831 1.43776 1.49991 1.16815 1.07175 1.21511 1.00804 0.95308 0.84910 1.19591 1.48729 0.91292 0.87504 0.91400 1.26056 0.96540 0.95624 1.01988 1.70042 1.44590 1.04416 1.34094 0.84961 0.78350 0.77914 0.77630 1.20090 1.18839 1.20038 1.20893 1.02497 0.88480 0.91258 1.20671 0.88945 0.84746 1.24912 1.43650 1.01180 1.03092 0.96954 1.94522 0.96524 1.94229 1.56002 1.94531 1.74218 1.16052 1.53190 0.90345 0.89693 0.85874 0.79154 0.80184 0.87197 0.85523 0.85955 0.86041 0.93373 0.92342 0.91071 0.91554 0.82488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 -5.50 8.51 -71.27 -0.61 -6.11 16 3 C 0.19 3.55 6.67 22.51 0.15 3.70 16 4 C -0.20 -2.19 9.04 22.36 0.20 -1.99 16 5 C 0.00 0.05 9.69 22.25 0.22 0.26 16 6 C -0.11 -1.75 5.14 -19.85 -0.10 -1.85 16 7 C -0.05 -0.83 6.07 71.23 0.43 -0.39 16 8 S -0.24 -7.32 20.86 -56.49 -1.18 -8.50 16 9 C -0.09 -2.97 5.03 71.24 0.36 -2.61 16 10 C 0.45 21.40 7.65 87.66 0.67 22.07 16 11 O -0.62 -35.43 15.58 -3.06 -0.05 -35.47 16 12 N -0.46 -23.06 3.01 -658.91 -1.98 -25.04 16 13 C 0.12 4.83 8.44 127.77 1.08 5.90 16 14 C -0.34 -19.35 9.24 84.04 0.78 -18.58 16 15 H 0.07 4.16 7.45 -2.91 -0.02 4.14 16 16 C 0.00 0.01 5.04 84.93 0.43 0.44 16 17 N -0.89 -46.00 10.83 21.66 0.23 -45.77 16 18 Si 0.99 42.01 29.57 68.60 2.03 44.04 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 C -0.01 -0.21 9.20 22.25 0.20 -0.01 16 23 C -0.11 -2.55 6.87 36.47 0.25 -2.30 16 24 N 0.04 1.19 4.45 -46.24 -0.21 0.99 16 25 O -0.21 -6.64 18.45 18.89 0.35 -6.29 16 26 O -0.16 -5.07 17.24 25.62 0.44 -4.63 16 27 H 0.08 0.29 7.66 -2.39 -0.02 0.27 16 28 H 0.08 0.18 7.66 -2.38 -0.02 0.16 16 29 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.19 0.58 6.30 -2.91 -0.02 0.57 16 31 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 32 H 0.11 1.53 8.08 -2.39 -0.02 1.51 16 33 H 0.13 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.12 3.25 7.41 -2.39 -0.02 3.23 16 35 H 0.12 3.31 8.11 -2.39 -0.02 3.29 16 36 H 0.05 2.00 7.83 -2.38 -0.02 1.98 16 37 H 0.06 2.60 6.80 -2.39 -0.02 2.58 16 38 H 0.07 2.21 6.61 -2.39 -0.02 2.19 16 39 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 40 H 0.16 3.28 7.61 -2.91 -0.02 3.26 16 Total: -1.00 -80.26 361.83 5.89 -74.37 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.08 Total: 6.62 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.78 Total: 5.79 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.96 Total: -69.82 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: 0.14 Total: -52.50 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -1.18 Total: -8.50 kcal Total: -80.26 5.89 -74.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337523968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.034 kcal (2) G-P(sol) polarization free energy of solvation -80.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds