Wall clock time and date at job start Sat Apr 11 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21250 * 119.99878 * 0.02562 * 3 2 1 5 5 C 1.47162 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.39875 * 120.17081 * 359.72728 * 5 3 2 7 7 C 1.37874 * 119.82250 * 179.72531 * 6 5 3 8 8 C 1.38428 * 120.17123 * 0.54778 * 7 6 5 9 9 C 1.38376 * 120.35065 * 359.72310 * 8 7 6 10 10 S 1.76201 * 119.91637 * 180.02562 * 9 8 7 11 11 O 1.42102 * 106.39999 * 23.52210 * 10 9 8 12 12 O 1.42098 * 106.40033 * 156.43804 * 10 9 8 13 13 N 1.65593 * 107.21880 * 269.98001 * 10 9 8 14 14 C 1.46504 * 120.00116 * 64.99567 * 13 10 9 15 15 C 1.50698 * 109.47155 * 165.00072 * 14 13 10 16 16 O 1.21288 * 120.00296 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00150 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00461 * 180.02562 * 17 15 14 19 19 H 1.08000 * 119.99911 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00299 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00234 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46824 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47153 * 119.99843 * 22 20 18 25 25 H 1.48504 * 109.47262 * 239.99847 * 22 20 18 26 26 C 1.37911 * 120.17165 * 359.97438 * 9 8 7 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.07992 * 120.08907 * 359.97438 * 6 5 3 33 33 H 1.07995 * 119.91108 * 180.25181 * 7 6 5 34 34 H 1.08000 * 119.82251 * 179.74737 * 8 7 6 35 35 H 0.97006 * 120.00241 * 244.99779 * 13 10 9 36 36 H 1.08997 * 109.47220 * 285.00529 * 14 13 10 37 37 H 1.09005 * 109.46618 * 45.00040 * 14 13 10 38 38 H 0.97003 * 119.99816 * 359.97438 * 17 15 14 39 39 H 0.96994 * 120.00341 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.08865 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3424 0.0005 5 6 3.4791 1.6898 -0.0006 6 6 4.3913 0.6294 0.0046 7 6 5.7452 0.8896 -0.0017 8 6 6.2026 2.1961 -0.0017 9 6 5.3066 3.2506 -0.0012 10 16 5.9014 4.9092 -0.0019 11 8 7.2130 4.8648 -0.5469 12 8 4.8602 5.7086 -0.5461 13 7 6.0676 5.3710 1.5796 14 6 7.0506 4.7051 2.4379 15 6 7.2687 5.5260 3.6826 16 8 6.6630 6.5654 3.8375 17 7 8.1375 5.1059 4.6233 18 6 8.3356 5.8524 5.7560 19 1 7.7957 6.7775 5.8943 20 6 9.2309 5.4190 6.7261 21 7 9.8876 4.2931 6.5582 22 14 9.5013 6.4366 8.2691 23 1 8.6478 7.6506 8.2172 24 1 9.1421 5.6302 9.4632 25 1 10.9287 6.8376 8.3538 26 6 3.9492 3.0068 -0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 4.0360 -0.3904 0.0095 33 1 6.4507 0.0719 -0.0018 34 1 7.2644 2.3935 -0.0025 35 1 5.5140 6.0825 1.9379 36 1 6.6817 3.7173 2.7140 37 1 7.9931 4.6036 1.8997 38 1 8.6222 4.2748 4.4994 39 1 10.5123 3.9903 7.2355 40 1 3.2511 3.8308 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352513405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:46 Heat of formation + Delta-G solvation = -126.115648 kcal Electronic energy + Delta-G solvation = -26464.897052 eV Core-core repulsion = 22371.719596 eV Total energy + Delta-G solvation = -4093.177456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.47153 -38.64212 -38.47615 -37.23666 -35.86521 -34.71626 -33.75935 -33.50133 -31.77381 -31.57395 -31.38931 -27.21771 -26.01957 -24.37717 -23.92138 -22.80065 -20.58842 -19.71026 -19.23849 -18.22220 -18.17692 -17.54159 -16.43912 -16.40833 -16.11415 -15.87327 -15.64073 -15.55701 -15.00661 -14.68718 -14.46903 -14.31045 -14.23776 -13.80172 -13.68376 -13.01816 -12.80119 -12.68672 -12.55729 -12.36834 -12.26910 -12.08429 -12.02897 -11.95010 -11.89970 -11.58825 -11.58068 -11.17846 -11.08953 -10.42236 -10.33591 -10.07806 -9.86691 -9.67429 -9.47809 -9.44347 -8.64331 -8.12357 -6.54240 -3.95743 0.08060 0.36003 0.62862 1.92264 2.92647 3.08761 3.21283 3.22871 3.28903 3.50462 3.68023 3.75372 4.07499 4.21869 4.33953 4.48906 4.51734 4.61717 4.67191 4.77778 4.79552 4.99670 5.08795 5.13091 5.30128 5.36212 5.40062 5.43329 5.51399 5.65273 5.69992 5.70988 5.76599 5.77796 5.81892 6.22538 6.30829 7.13727 7.19124 7.44615 7.91211 8.43289 9.03304 9.36487 9.85047 10.62871 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.002693 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.022308 B =10393.531962 C =11173.866139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.170 4.170 3 C 0.394 3.606 4 O -0.445 6.445 5 C -0.194 4.194 6 C -0.023 4.023 7 C -0.150 4.150 8 C 0.010 3.990 9 C -0.688 4.688 10 S 2.700 3.300 11 O -0.954 6.954 12 O -0.956 6.956 13 N -1.095 6.095 14 C 0.105 3.895 15 C 0.435 3.565 16 O -0.588 6.588 17 N -0.552 5.552 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.932 3.068 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.280 1.280 26 C 0.039 3.961 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.429 0.571 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.395 0.605 39 H 0.273 0.727 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.035 -14.659 -13.592 22.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.207 4.207 3 C 0.271 3.729 4 O -0.319 6.319 5 C -0.196 4.196 6 C -0.041 4.041 7 C -0.169 4.169 8 C -0.009 4.009 9 C -0.773 4.773 10 S 2.787 3.213 11 O -0.944 6.944 12 O -0.946 6.946 13 N -0.860 5.860 14 C -0.026 4.026 15 C 0.219 3.781 16 O -0.473 6.473 17 N -0.188 5.188 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.537 5.537 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.207 1.207 25 H -0.206 1.206 26 C 0.020 3.980 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.269 0.731 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.229 0.771 39 H 0.083 0.917 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.430 -13.214 -14.141 21.986 hybrid contribution 0.229 -0.685 1.249 1.443 sum -10.200 -13.899 -12.892 21.528 Atomic orbital electron populations 1.21605 0.93361 1.01965 1.03329 1.21998 0.98680 0.95327 1.04694 1.22510 0.87407 0.91561 0.71408 1.90560 1.58098 1.47714 1.35542 1.20658 0.95507 0.94327 1.09130 1.21751 0.93156 0.98853 0.90330 1.21323 0.95788 0.97182 1.02597 1.21320 1.00027 0.91962 0.87561 1.31227 1.02298 1.25170 1.18578 1.01782 0.73851 0.73258 0.72413 1.93593 1.37810 1.86505 1.76458 1.93604 1.58048 1.66680 1.76252 1.55096 1.50648 1.50024 1.30228 1.20975 0.92654 0.95834 0.93119 1.19574 0.84956 0.88186 0.85402 1.90518 1.51873 1.25694 1.79215 1.41815 1.36612 1.23082 1.17288 1.19786 1.22782 1.05774 0.94878 0.87611 1.25305 0.96055 0.96610 0.99757 1.69609 1.27061 1.20950 1.36096 0.85764 0.78268 0.79630 0.80482 1.19124 1.20655 1.20601 1.21212 0.93634 0.97379 0.85790 0.91884 0.91917 0.92006 0.88114 0.88232 0.84251 0.84042 0.83296 0.73138 0.90272 0.88575 0.77138 0.91683 0.83086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.20 37.16 0.34 -0.60 16 2 C -0.17 -0.99 5.03 -27.88 -0.14 -1.13 16 3 C 0.39 3.86 7.12 -30.69 -0.22 3.65 16 4 O -0.44 -5.94 15.98 5.58 0.09 -5.85 16 5 C -0.19 -1.94 5.87 -105.07 -0.62 -2.55 16 6 C -0.02 -0.16 9.47 -39.10 -0.37 -0.53 16 7 C -0.15 -1.13 10.03 -39.64 -0.40 -1.52 16 8 C 0.01 0.10 9.52 -39.46 -0.38 -0.27 16 9 C -0.69 -8.15 5.94 -39.65 -0.24 -8.38 16 10 S 2.70 38.22 5.74 -107.50 -0.62 37.61 16 11 O -0.95 -15.17 16.74 -57.17 -0.96 -16.13 16 12 O -0.96 -15.78 17.27 -57.17 -0.99 -16.76 16 13 N -1.09 -16.91 5.93 -11.65 -0.07 -16.98 16 14 C 0.10 1.69 6.70 -5.19 -0.03 1.65 16 15 C 0.43 9.64 7.85 -10.99 -0.09 9.56 16 16 O -0.59 -15.06 15.30 5.55 0.08 -14.97 16 17 N -0.55 -13.19 5.29 -10.97 -0.06 -13.24 16 18 C -0.30 -8.07 9.68 -14.94 -0.14 -8.22 16 19 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 20 C 0.03 0.65 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -23.26 13.05 55.50 0.72 -22.54 16 22 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.04 0.47 9.07 -39.10 -0.35 0.12 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.10 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.14 0.49 7.05 -52.49 -0.37 0.12 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.15 1.24 7.60 -52.49 -0.40 0.84 16 35 H 0.43 7.01 7.70 -34.47 -0.27 6.74 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.38 7.75 -51.93 -0.40 0.98 16 38 H 0.39 8.82 7.90 -40.82 -0.32 8.50 16 39 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.15 1.92 7.20 -52.49 -0.38 1.54 16 LS Contribution 364.54 15.07 5.49 5.49 Total: -1.00 -35.42 364.54 -8.65 -44.06 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -4.60 Total: 11.73 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.73 Total: -7.69 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.60 Total: -52.76 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -1.77 Total: -53.71 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 38.22 SS G_CDS: -0.62 Total: 37.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.42 -8.65 -44.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352513405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.053 kcal (2) G-P(sol) polarization free energy of solvation -35.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds