Wall clock time and date at job start Sat Apr 11 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 O 1.21250 * 119.99878 * 0.02562 * 3 2 1 5 5 C 1.47162 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.39875 * 120.17081 * 359.72728 * 5 3 2 7 7 C 1.37874 * 119.82250 * 179.72531 * 6 5 3 8 8 C 1.38428 * 120.17123 * 0.54778 * 7 6 5 9 9 C 1.38376 * 120.35065 * 359.72310 * 8 7 6 10 10 S 1.76201 * 119.91637 * 180.02562 * 9 8 7 11 11 O 1.42102 * 106.39999 * 23.52210 * 10 9 8 12 12 O 1.42098 * 106.40033 * 156.43804 * 10 9 8 13 13 N 1.65593 * 107.21880 * 269.98001 * 10 9 8 14 14 C 1.46504 * 120.00116 * 64.99567 * 13 10 9 15 15 C 1.50698 * 109.47155 * 165.00072 * 14 13 10 16 16 O 1.21288 * 120.00296 * 359.97438 * 15 14 13 17 17 N 1.34774 * 120.00150 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00461 * 180.02562 * 17 15 14 19 19 H 1.08000 * 119.99911 * 359.97438 * 18 17 15 20 20 C 1.38944 * 120.00299 * 179.97438 * 18 17 15 21 21 N 1.31415 * 120.00234 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00187 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46824 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47153 * 119.99843 * 22 20 18 25 25 H 1.48504 * 109.47262 * 239.99847 * 22 20 18 26 26 C 1.37911 * 120.17165 * 359.97438 * 9 8 7 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.07992 * 120.08907 * 359.97438 * 6 5 3 33 33 H 1.07995 * 119.91108 * 180.25181 * 7 6 5 34 34 H 1.08000 * 119.82251 * 179.74737 * 8 7 6 35 35 H 0.97006 * 120.00241 * 244.99779 * 13 10 9 36 36 H 1.08997 * 109.47220 * 285.00529 * 14 13 10 37 37 H 1.09005 * 109.46618 * 45.00040 * 14 13 10 38 38 H 0.97003 * 119.99816 * 359.97438 * 17 15 14 39 39 H 0.96994 * 120.00341 * 180.02562 * 21 20 18 40 40 H 1.08002 * 120.08865 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2443 2.3424 0.0005 5 6 3.4791 1.6898 -0.0006 6 6 4.3913 0.6294 0.0046 7 6 5.7452 0.8896 -0.0017 8 6 6.2026 2.1961 -0.0017 9 6 5.3066 3.2506 -0.0012 10 16 5.9014 4.9092 -0.0019 11 8 7.2130 4.8648 -0.5469 12 8 4.8602 5.7086 -0.5461 13 7 6.0676 5.3710 1.5796 14 6 7.0506 4.7051 2.4379 15 6 7.2687 5.5260 3.6826 16 8 6.6630 6.5654 3.8375 17 7 8.1375 5.1059 4.6233 18 6 8.3356 5.8524 5.7560 19 1 7.7957 6.7775 5.8943 20 6 9.2309 5.4190 6.7261 21 7 9.8876 4.2931 6.5582 22 14 9.5013 6.4366 8.2691 23 1 8.6478 7.6506 8.2172 24 1 9.1421 5.6302 9.4632 25 1 10.9287 6.8376 8.3538 26 6 3.9492 3.0068 -0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 4.0360 -0.3904 0.0095 33 1 6.4507 0.0719 -0.0018 34 1 7.2644 2.3935 -0.0025 35 1 5.5140 6.0825 1.9379 36 1 6.6817 3.7173 2.7140 37 1 7.9931 4.6036 1.8997 38 1 8.6222 4.2748 4.4994 39 1 10.5123 3.9903 7.2355 40 1 3.2511 3.8308 -0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352513405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:45 Heat of formation + Delta-G solvation = -153.952971 kcal Electronic energy + Delta-G solvation = -26466.104169 eV Core-core repulsion = 22371.719596 eV Total energy + Delta-G solvation = -4094.384573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.20687 -40.27758 -39.38666 -38.46935 -37.09646 -36.35237 -35.41905 -34.09976 -33.33072 -32.44399 -32.28696 -28.79122 -26.67637 -26.17155 -24.63924 -23.45246 -21.44456 -21.36320 -20.30505 -20.06729 -19.11098 -18.80744 -17.52624 -17.34381 -17.14840 -16.97056 -16.61219 -16.49034 -16.44562 -16.05456 -15.98137 -15.48980 -15.25328 -14.91550 -14.45732 -14.21643 -13.98247 -13.74169 -13.61400 -13.49815 -13.37835 -13.29685 -13.18286 -13.14672 -12.92647 -12.85573 -12.56882 -12.42589 -12.12132 -12.03382 -11.97403 -11.56508 -10.85479 -10.71905 -10.57340 -10.44888 -10.19249 -10.06064 -8.49729 -5.98519 -0.81459 -0.55728 -0.17522 1.23315 1.35649 1.43658 1.56590 1.84514 1.94609 2.29394 2.42746 2.66775 2.83889 3.05602 3.17578 3.29763 3.69396 3.80117 3.91572 3.98015 4.09290 4.14856 4.27630 4.28791 4.37305 4.42574 4.53869 4.70072 4.72850 4.78472 4.95980 5.00993 5.05038 5.06645 5.14883 5.32772 5.40658 5.66493 5.82985 5.97978 6.45853 6.53004 7.07695 7.47844 8.01295 8.67269 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.002693 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.022308 B =10393.531962 C =11173.866139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.163 4.163 3 C 0.391 3.609 4 O -0.497 6.497 5 C -0.208 4.208 6 C -0.002 4.002 7 C -0.140 4.140 8 C 0.000 4.000 9 C -0.691 4.691 10 S 2.714 3.286 11 O -0.973 6.973 12 O -0.988 6.988 13 N -1.104 6.104 14 C 0.113 3.887 15 C 0.432 3.568 16 O -0.628 6.628 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.913 5.913 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.012 3.988 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.423 0.577 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.402 0.598 39 H 0.280 0.720 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 -18.687 -13.702 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.199 4.199 3 C 0.271 3.729 4 O -0.374 6.374 5 C -0.210 4.210 6 C -0.019 4.019 7 C -0.159 4.159 8 C -0.020 4.020 9 C -0.781 4.781 10 S 2.807 3.193 11 O -0.963 6.963 12 O -0.979 6.979 13 N -0.866 5.866 14 C -0.017 4.017 15 C 0.219 3.781 16 O -0.515 6.515 17 N -0.197 5.197 18 C -0.466 4.466 19 H 0.098 0.902 20 C -0.208 4.208 21 N -0.553 5.553 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.008 4.008 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.206 0.794 33 H 0.200 0.800 34 H 0.180 0.820 35 H 0.261 0.739 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.237 0.763 39 H 0.089 0.911 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.502 -17.237 -14.262 24.306 hybrid contribution -0.092 0.468 1.213 1.303 sum -9.594 -16.770 -13.049 23.314 Atomic orbital electron populations 1.21635 0.94349 1.02961 1.01651 1.22106 0.97812 0.92536 1.07481 1.23250 0.87096 0.93044 0.69474 1.90553 1.59139 1.49595 1.38157 1.20893 0.96408 0.94145 1.09525 1.22301 0.92493 1.00102 0.87046 1.21832 0.96707 0.97007 1.00329 1.21677 1.00371 0.92564 0.87339 1.30596 1.02533 1.23546 1.21435 1.01001 0.72909 0.73916 0.71497 1.93555 1.38811 1.87294 1.76683 1.93556 1.58870 1.68733 1.76710 1.55147 1.50629 1.50439 1.30407 1.21025 0.94229 0.96074 0.90380 1.20569 0.83218 0.87924 0.86429 1.90493 1.52946 1.27689 1.80379 1.41833 1.37377 1.23278 1.17214 1.19701 1.24063 1.05941 0.96864 0.90211 1.26002 0.95310 0.97567 1.01910 1.69649 1.27095 1.21527 1.37012 0.84898 0.78241 0.77991 0.77375 1.20016 1.19476 1.19620 1.21179 0.93506 0.98336 0.87774 0.89394 0.93866 0.93612 0.85175 0.84905 0.79388 0.79967 0.81953 0.73894 0.86473 0.86336 0.76317 0.91059 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.20 71.98 0.66 -1.02 16 2 C -0.16 -1.31 5.03 29.85 0.15 -1.16 16 3 C 0.39 7.20 7.12 28.03 0.20 7.40 16 4 O -0.50 -13.89 15.98 -2.94 -0.05 -13.94 16 5 C -0.21 -3.73 5.87 -20.15 -0.12 -3.85 16 6 C 0.00 -0.02 9.47 22.58 0.21 0.20 16 7 C -0.14 -1.38 10.03 22.23 0.22 -1.16 16 8 C 0.00 0.00 9.52 22.35 0.21 0.21 16 9 C -0.69 -15.92 5.94 22.22 0.13 -15.79 16 10 S 2.71 78.73 5.74 -56.49 -0.32 78.41 16 11 O -0.97 -30.87 16.74 -128.00 -2.14 -33.01 16 12 O -0.99 -34.75 17.27 -128.00 -2.21 -36.96 16 13 N -1.10 -34.79 5.93 -190.78 -1.13 -35.92 16 14 C 0.11 3.54 6.70 85.63 0.57 4.11 16 15 C 0.43 19.45 7.85 87.66 0.69 20.14 16 16 O -0.63 -33.32 15.30 -3.05 -0.05 -33.37 16 17 N -0.56 -27.03 5.29 -307.00 -1.62 -28.65 16 18 C -0.34 -18.30 9.68 84.04 0.81 -17.49 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.36 5.50 84.92 0.47 0.11 16 21 N -0.91 -46.63 13.05 21.66 0.28 -46.35 16 22 Si 0.99 41.42 29.55 68.60 2.03 43.45 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 26 C 0.01 0.29 9.07 22.58 0.20 0.49 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 29 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 30 H 0.13 0.36 8.08 -2.39 -0.02 0.34 16 31 H 0.13 0.25 8.09 -2.39 -0.02 0.23 16 32 H 0.19 -0.10 7.05 -2.91 -0.02 -0.12 16 33 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 34 H 0.16 2.19 7.60 -2.91 -0.02 2.17 16 35 H 0.42 14.61 7.70 -96.74 -0.75 13.86 16 36 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.12 3.23 7.75 -2.38 -0.02 3.21 16 38 H 0.40 17.86 7.90 -92.71 -0.73 17.13 16 39 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 40 H 0.13 3.59 7.20 -2.91 -0.02 3.57 16 Total: -1.00 -81.72 364.54 -1.16 -82.88 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.37 Total: 31.27 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.42 Total: -7.81 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -2.47 Total: -110.92 kcal Atomic # 8 Polarization: -112.83 SS G_CDS: -4.45 Total: -117.27 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 78.73 SS G_CDS: -0.32 Total: 78.41 kcal Total: -81.72 -1.16 -82.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352513405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.070 kcal (2) G-P(sol) polarization free energy of solvation -81.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds