Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46505 * 119.99460 * 2 1 4 4 C 1.50694 * 109.47036 * 275.00116 * 3 2 1 5 5 H 1.07997 * 120.00505 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99909 * 180.02562 * 4 3 2 7 7 N 1.31507 * 119.99844 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99963 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47284 * 59.99654 * 8 6 4 10 10 H 1.48502 * 109.46793 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47275 * 299.99342 * 8 6 4 12 12 S 1.65590 * 120.00189 * 180.02562 * 2 1 3 13 13 O 1.42108 * 106.40339 * 156.46024 * 12 2 1 14 14 O 1.42102 * 106.40752 * 23.53533 * 12 2 1 15 15 N 1.65602 * 107.21681 * 269.99696 * 12 2 1 16 16 C 1.46500 * 120.00277 * 65.00172 * 15 12 2 17 17 C 1.52996 * 109.47536 * 164.50068 * 16 15 12 18 18 S 1.81394 * 112.85051 * 292.17391 * 17 16 15 19 19 C 1.81395 * 101.92209 * 306.58465 * 18 17 16 20 20 O 1.42103 * 108.58028 * 61.07826 * 18 17 16 21 21 O 1.42108 * 108.57821 * 192.09834 * 18 17 16 22 22 C 1.53788 * 113.61299 * 63.36969 * 17 16 15 23 23 C 1.53785 * 87.08112 * 89.11292 * 22 17 16 24 24 C 1.53784 * 87.16843 * 25.39108 * 23 22 17 25 25 H 1.08998 * 109.46940 * 269.99287 * 1 2 3 26 26 H 1.08994 * 109.47192 * 30.00012 * 1 2 3 27 27 H 1.09008 * 109.46673 * 150.00209 * 1 2 3 28 28 H 1.08997 * 109.47355 * 35.00434 * 3 2 1 29 29 H 1.09001 * 109.46720 * 155.00229 * 3 2 1 30 30 H 0.97001 * 120.00447 * 179.97438 * 7 6 4 31 31 H 0.97002 * 119.99995 * 244.99901 * 15 12 2 32 32 H 1.08998 * 109.46897 * 44.49900 * 16 15 12 33 33 H 1.09000 * 109.47085 * 284.50515 * 16 15 12 34 34 H 1.09007 * 109.46677 * 65.08657 * 19 18 17 35 35 H 1.08997 * 109.47420 * 185.07739 * 19 18 17 36 36 H 1.08996 * 109.47165 * 305.08322 * 19 18 17 37 37 H 1.09003 * 113.61233 * 334.57076 * 22 17 16 38 38 H 1.08996 * 113.69154 * 203.67505 * 22 17 16 39 39 H 1.09000 * 113.61145 * 139.97553 * 23 22 17 40 40 H 1.08995 * 113.61777 * 270.79824 * 23 22 17 41 41 H 1.09001 * 113.61105 * 89.16021 * 24 23 22 42 42 H 1.08998 * 113.61004 * 220.05341 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3413 1.7658 -1.4154 5 1 1.9289 1.1936 -2.2332 6 6 3.0005 2.9506 -1.6664 7 7 3.5031 3.6471 -0.6706 8 14 3.1781 3.5669 -3.4208 9 1 1.8315 3.7733 -4.0117 10 1 3.9206 4.8530 -3.4207 11 1 3.9231 2.5648 -4.2245 12 16 2.2931 -1.4340 -0.0006 13 8 3.5761 -1.1564 -0.5450 14 8 1.4115 -2.4063 -0.5454 15 7 2.5382 -1.8592 1.5810 16 6 1.3948 -2.1788 2.4393 17 6 1.8865 -2.8974 3.6973 18 16 2.5495 -4.5499 3.3509 19 6 1.1833 -5.3179 2.4376 20 8 3.6613 -4.4174 2.4758 21 8 2.7145 -5.2390 4.5827 22 6 2.8072 -2.0365 4.5785 23 6 1.5357 -1.5460 5.2910 24 6 0.8758 -2.8658 4.8581 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6501 2.0043 0.5895 29 1 3.1858 1.1178 0.4343 30 1 3.9672 4.4804 -0.8472 31 1 3.4389 -1.8966 1.9391 32 1 0.7039 -2.8252 1.8983 33 1 0.8847 -1.2581 2.7227 34 1 1.0391 -4.7950 1.4921 35 1 1.4197 -6.3638 2.2418 36 1 0.2704 -5.2564 3.0299 37 1 3.3296 -1.2532 4.0293 38 1 3.4698 -2.6184 5.2190 39 1 1.6502 -1.4486 6.3706 40 1 1.0903 -0.6637 4.8313 41 1 1.0087 -3.6761 5.5750 42 1 -0.1587 -2.7511 4.5345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360203751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -148.059493 kcal Electronic energy + Delta-G solvation = -27435.906365 eV Core-core repulsion = 23477.221304 eV Total energy + Delta-G solvation = -3958.685061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43120 -38.29720 -38.11047 -37.19933 -37.07822 -36.84466 -35.45603 -34.49003 -30.63781 -29.64537 -28.51119 -26.75494 -26.71423 -25.03264 -24.19730 -20.76250 -20.43070 -19.51336 -18.98395 -18.61461 -18.36218 -18.04486 -17.27679 -17.14059 -16.89843 -16.66120 -16.17669 -15.58070 -15.27312 -14.93058 -14.88937 -14.47688 -14.09013 -13.97260 -13.91158 -13.85507 -13.62565 -13.43581 -13.32452 -13.17511 -13.15432 -13.04872 -13.03395 -12.95426 -12.91511 -12.72297 -12.45951 -12.35148 -11.99359 -11.95118 -11.76124 -11.58262 -11.43989 -11.00905 -10.58880 -10.40986 -9.77323 -8.19953 -6.31321 -0.96480 -0.35195 1.39363 1.43150 1.49872 1.73901 2.01879 2.40399 2.55834 2.63790 2.87681 3.11342 3.16997 3.36093 3.43448 3.56392 3.82061 4.05939 4.10488 4.16477 4.21100 4.36755 4.54255 4.64003 4.72836 4.79912 4.82317 4.88120 4.95980 5.01659 5.05962 5.13298 5.15633 5.22443 5.42480 5.47546 5.71177 5.84902 6.05142 6.12922 6.76833 7.37471 8.87202 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.020983 B = 0.003589 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.122612 B = 7800.120091 C = 8178.538569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.000 6.000 3 C 0.272 3.728 4 C -0.552 4.552 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.923 5.923 8 Si 0.953 3.047 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.280 1.280 12 S 2.797 3.203 13 O -1.013 7.013 14 O -1.002 7.002 15 N -1.129 6.129 16 C 0.139 3.861 17 C -0.567 4.567 18 S 2.405 3.595 19 C -0.651 4.651 20 O -0.982 6.982 21 O -0.968 6.968 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.095 4.095 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.014 0.986 30 H 0.267 0.733 31 H 0.422 0.578 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.169 0.831 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.573 -13.682 14.593 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.842 5.842 3 C 0.149 3.851 4 C -0.591 4.591 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.778 3.222 9 H -0.186 1.186 10 H -0.202 1.202 11 H -0.206 1.206 12 S 2.805 3.195 13 O -0.997 6.997 14 O -0.985 6.985 15 N -0.893 5.893 16 C 0.013 3.987 17 C -0.660 4.660 18 S 2.594 3.406 19 C -0.803 4.803 20 O -0.979 6.979 21 O -0.965 6.965 22 C -0.162 4.162 23 C -0.160 4.160 24 C -0.134 4.134 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.258 0.742 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.187 0.813 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.131 0.869 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.555 -14.389 14.014 22.690 hybrid contribution 0.463 0.999 -0.923 1.437 sum -10.091 -13.389 13.091 21.272 Atomic orbital electron populations 1.21699 0.77697 1.03768 1.03091 1.57457 1.15901 1.21613 1.89244 1.18603 0.90483 0.80323 0.95735 1.21839 1.36291 1.06575 0.94383 0.93046 1.25707 0.94819 0.96830 1.01258 1.69986 1.37794 1.15758 1.32742 0.85690 0.78857 0.77517 0.80159 1.18650 1.20183 1.20563 1.01231 0.72129 0.72727 0.73426 1.93581 1.43316 1.85436 1.77400 1.93490 1.67470 1.59972 1.77565 1.56018 1.16136 1.85874 1.31293 1.21263 0.87397 1.02499 0.87555 1.31445 1.12020 1.18886 1.03692 1.08049 0.78509 0.78595 0.75492 1.30190 1.19878 1.14352 1.15879 1.93546 1.50584 1.86444 1.67365 1.93541 1.86389 1.71891 1.44699 1.22838 0.97487 0.98905 0.96951 1.22777 0.93998 0.97654 1.01527 1.22928 0.98462 1.00111 0.91898 0.89898 0.91314 0.90334 0.94815 0.96758 0.92405 0.74155 0.87132 0.86951 0.84420 0.84229 0.81266 0.89889 0.88677 0.89339 0.88488 0.86941 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 10.68 127.77 1.36 3.73 16 2 N -1.00 -38.42 3.23 -543.21 -1.75 -40.17 16 3 C 0.27 13.36 5.08 85.63 0.43 13.79 16 4 C -0.55 -30.90 9.38 25.60 0.24 -30.66 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 6 C 0.01 0.76 5.46 84.66 0.46 1.22 16 7 N -0.92 -53.71 13.29 21.45 0.28 -53.42 16 8 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 9 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 S 2.80 106.79 6.10 -56.49 -0.34 106.44 16 13 O -1.01 -50.47 17.11 -128.00 -2.19 -52.66 16 14 O -1.00 -37.52 16.20 -128.00 -2.07 -39.60 16 15 N -1.13 -31.24 5.35 -187.50 -1.00 -32.24 16 16 C 0.14 2.39 5.38 86.38 0.46 2.86 16 17 C -0.57 -8.41 0.80 -10.21 -0.01 -8.42 16 18 S 2.41 47.55 4.94 -56.49 -0.28 47.27 16 19 C -0.65 -7.87 9.91 113.37 1.12 -6.75 16 20 O -0.98 -29.23 17.13 -127.37 -2.18 -31.42 16 21 O -0.97 -23.01 17.35 -127.37 -2.21 -25.22 16 22 C -0.12 -1.94 6.97 31.12 0.22 -1.72 16 23 C -0.12 -1.24 7.72 31.12 0.24 -1.00 16 24 C -0.10 -0.75 7.22 31.18 0.23 -0.52 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 2.12 8.07 -2.39 -0.02 2.11 16 27 H 0.08 2.07 7.02 -2.38 -0.02 2.05 16 28 H 0.03 1.65 8.11 -2.39 -0.02 1.63 16 29 H 0.01 0.77 7.61 -2.39 -0.02 0.75 16 30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 31 H 0.42 11.80 7.40 -96.74 -0.72 11.09 16 32 H 0.11 1.41 6.08 -2.39 -0.01 1.40 16 33 H 0.11 1.44 7.32 -2.39 -0.02 1.42 16 34 H 0.14 1.81 7.14 -2.39 -0.02 1.80 16 35 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.08 1.50 7.41 -2.39 -0.02 1.48 16 38 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.94 7.63 -2.39 -0.02 0.92 16 41 H 0.11 0.81 7.49 -2.39 -0.02 0.79 16 42 H 0.12 0.24 8.10 -2.39 -0.02 0.22 16 Total: -1.00 -84.06 366.30 -4.64 -88.70 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.32 Total: 13.28 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 4.76 Total: -27.46 kcal Atomic # 7 Polarization: -123.36 SS G_CDS: -2.47 Total: -125.83 kcal Atomic # 8 Polarization: -140.24 SS G_CDS: -8.66 Total: -148.89 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 154.34 SS G_CDS: -0.62 Total: 153.72 kcal Total: -84.06 -4.64 -88.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360203751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.364 kcal (2) G-P(sol) polarization free energy of solvation -84.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds