Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99670 * 2 1 4 4 O 1.20825 * 120.00096 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99905 * 180.02562 * 3 2 1 6 6 N 1.46497 * 109.47097 * 185.99776 * 5 3 2 7 7 C 1.36947 * 119.99717 * 83.15143 * 6 5 3 8 8 H 1.08000 * 119.99485 * 166.98228 * 7 6 5 9 9 C 1.38808 * 120.00284 * 346.97750 * 7 6 5 10 10 N 1.31620 * 119.99767 * 359.40853 * 9 7 6 11 11 Si 1.86801 * 120.00025 * 179.40698 * 9 7 6 12 12 H 1.48504 * 109.46739 * 60.00111 * 11 9 7 13 13 H 1.48494 * 109.46931 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47293 * 300.00266 * 11 9 7 15 15 C 1.46497 * 120.00412 * 263.15099 * 6 5 3 16 16 C 1.50698 * 109.47111 * 274.57289 * 15 6 5 17 17 O 1.21282 * 119.99827 * 354.73530 * 16 15 6 18 18 N 1.34780 * 120.00006 * 174.73801 * 16 15 6 19 19 C 1.46494 * 119.99909 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.47226 * 180.02562 * 19 18 16 21 21 O 1.21442 * 119.99635 * 359.97438 * 20 19 18 22 22 C 1.41228 * 120.00168 * 180.02562 * 20 19 18 23 23 C 1.37186 * 125.48422 * 180.02562 * 22 20 19 24 24 C 1.37195 * 113.24866 * 179.97438 * 23 22 20 25 25 C 1.34025 * 115.14679 * 0.02562 * 24 23 22 26 26 S 1.70612 * 110.99537 * 359.72170 * 25 24 23 27 27 H 1.09000 * 109.47186 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47150 * 299.99418 * 1 2 3 29 29 H 1.08996 * 109.47405 * 59.99919 * 1 2 3 30 30 H 1.08991 * 109.47288 * 65.99420 * 5 3 2 31 31 H 1.08997 * 109.46923 * 305.99672 * 5 3 2 32 32 H 0.97001 * 119.99511 * 180.02562 * 10 9 7 33 33 H 1.08990 * 109.47591 * 154.56556 * 15 6 5 34 34 H 1.09001 * 109.46618 * 34.56981 * 15 6 5 35 35 H 0.97002 * 120.00011 * 359.97438 * 18 16 15 36 36 H 1.09001 * 109.47481 * 300.00175 * 19 18 16 37 37 H 1.08998 * 109.47183 * 60.00086 * 19 18 16 38 38 H 1.08006 * 123.37480 * 359.96241 * 23 22 20 39 39 H 1.07998 * 122.42863 * 180.02562 * 24 23 22 40 40 H 1.07991 * 124.49932 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9820 2.6722 0.1439 7 6 4.0476 3.2420 1.3874 8 1 4.5477 4.1899 1.5214 9 6 3.4714 2.6014 2.4757 10 7 2.8519 1.4519 2.3104 11 14 3.5754 3.3706 4.1748 12 1 2.9211 4.7036 4.1555 13 1 2.8863 2.4957 5.1571 14 1 5.0006 3.5242 4.5623 15 6 4.3276 3.4601 -1.0419 16 6 5.7737 3.2269 -1.3960 17 8 6.4745 2.5530 -0.6709 18 7 6.2883 3.7673 -2.5184 19 6 7.6943 3.5410 -2.8622 20 6 8.0157 4.2484 -4.1535 21 8 7.1538 4.8798 -4.7307 22 6 9.3189 4.1761 -4.6928 23 6 9.7339 4.7743 -5.8556 24 6 11.0545 4.5398 -6.1439 25 6 11.7050 3.7773 -5.2541 26 16 10.6727 3.3111 -3.9782 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.9506 0.8767 -0.9395 31 1 3.9610 0.6907 0.8306 32 1 2.4489 1.0045 3.0709 33 1 4.1706 4.5183 -0.8336 34 1 3.6957 3.1565 -1.8766 35 1 5.7277 4.3059 -3.0984 36 1 8.3300 3.9304 -2.0671 37 1 7.8723 2.4721 -2.9791 38 1 9.0857 5.3699 -6.4815 39 1 11.5352 4.9407 -7.0240 40 1 12.7456 3.4993 -5.3318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362240009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -100.224323 kcal Electronic energy + Delta-G solvation = -26597.488535 eV Core-core repulsion = 22505.433811 eV Total energy + Delta-G solvation = -4092.054724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.27556 -40.74595 -40.09590 -38.36072 -37.55681 -36.29991 -35.35456 -33.39999 -31.94378 -30.40035 -29.43010 -27.88492 -27.66554 -25.72830 -24.06576 -22.20951 -21.71750 -21.34820 -20.21515 -19.13957 -18.80413 -18.08747 -17.76661 -17.41410 -17.12769 -16.91543 -16.76420 -16.58951 -16.33710 -15.85107 -15.55471 -15.29604 -14.97978 -14.84579 -14.31042 -14.01468 -13.94251 -13.84148 -13.72126 -13.57686 -13.15375 -13.10972 -12.89370 -12.67935 -12.60213 -12.25711 -12.09176 -11.97434 -11.85954 -11.35141 -11.28066 -11.17068 -10.79483 -10.54481 -10.15075 -9.92106 -9.56896 -9.06735 -7.91564 -5.33782 -0.78015 0.50311 0.94194 1.09896 1.45868 1.48944 1.54500 1.78776 1.88272 1.97088 2.14558 2.43131 2.58518 2.96519 3.34049 3.51588 3.99641 4.11981 4.21064 4.24721 4.29552 4.40770 4.42239 4.49222 4.50696 4.52948 4.55365 4.62503 4.73549 4.99571 5.02155 5.19709 5.32494 5.34039 5.42352 5.52946 6.02911 6.17266 6.25444 6.58515 6.99735 7.37370 7.57275 7.74063 8.05479 9.12221 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016617 B = 0.002459 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.624643 B =11382.354682 C =12272.073753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.383 6.383 3 C 0.483 3.517 4 O -0.564 6.564 5 C 0.200 3.800 6 N -0.568 5.568 7 C -0.236 4.236 8 H 0.080 0.920 9 C -0.056 4.056 10 N -0.939 5.939 11 Si 0.983 3.017 12 H -0.283 1.283 13 H -0.294 1.294 14 H -0.277 1.277 15 C 0.130 3.870 16 C 0.491 3.509 17 O -0.561 6.561 18 N -0.722 5.722 19 C 0.069 3.931 20 C 0.431 3.569 21 O -0.478 6.478 22 C -0.345 4.345 23 C -0.036 4.036 24 C -0.169 4.169 25 C -0.207 4.207 26 S 0.248 5.752 27 H 0.123 0.877 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.251 0.749 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.414 0.586 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.171 0.829 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.966 2.221 -17.657 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.299 6.299 3 C 0.327 3.673 4 O -0.454 6.454 5 C 0.071 3.929 6 N -0.286 5.286 7 C -0.365 4.365 8 H 0.098 0.902 9 C -0.248 4.248 10 N -0.589 5.589 11 Si 0.812 3.188 12 H -0.209 1.209 13 H -0.220 1.220 14 H -0.203 1.203 15 C 0.000 4.000 16 C 0.276 3.724 17 O -0.438 6.438 18 N -0.380 5.380 19 C -0.056 4.056 20 C 0.312 3.688 21 O -0.357 6.357 22 C -0.463 4.463 23 C -0.071 4.071 24 C -0.199 4.199 25 C -0.345 4.345 26 S 0.517 5.483 27 H 0.141 0.859 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.252 0.748 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.172 0.828 39 H 0.188 0.812 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 15.948 1.389 -15.939 22.590 hybrid contribution -0.822 1.467 -0.361 1.720 sum 15.126 2.856 -16.300 22.420 Atomic orbital electron populations 1.23121 0.77735 1.03940 1.00575 1.86472 1.22932 1.35260 1.85251 1.25075 0.93420 0.80102 0.68729 1.90402 1.67626 1.37657 1.49749 1.20258 0.85267 0.86603 1.00722 1.43553 1.73960 1.08594 1.02465 1.19583 1.27728 1.04178 0.85024 0.90176 1.25535 0.99127 0.98030 1.02118 1.69582 1.41853 1.17639 1.29867 0.85078 0.77531 0.77195 0.79017 1.20885 1.21985 1.20265 1.20887 0.90128 0.98276 0.90756 1.22653 0.92065 0.78202 0.79511 1.90647 1.62183 1.39879 1.51044 1.45870 1.11256 1.55080 1.25767 1.21653 0.85155 1.02403 0.96384 1.20087 0.86378 0.77187 0.85189 1.90575 1.49197 1.36003 1.59962 1.23920 1.00659 1.16033 1.05684 1.21274 0.96508 0.95554 0.93793 1.20314 0.93518 1.02735 1.03288 1.26052 1.06790 1.02666 0.99019 1.83417 0.97513 1.45674 1.21734 0.85852 0.94949 0.92819 0.91662 0.88234 0.93856 0.88457 0.89101 0.74830 0.87982 0.87699 0.82793 0.81190 0.78189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 10.56 113.37 1.20 2.66 16 2 O -0.38 -17.41 10.57 -51.40 -0.54 -17.96 16 3 C 0.48 24.72 5.47 71.24 0.39 25.11 16 4 O -0.56 -31.81 16.02 21.97 0.35 -31.45 16 5 C 0.20 10.03 5.63 85.63 0.48 10.51 16 6 N -0.57 -28.68 1.56 -710.72 -1.11 -29.78 16 7 C -0.24 -13.09 9.67 84.03 0.81 -12.28 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 C -0.06 -3.18 5.36 84.86 0.45 -2.73 16 10 N -0.94 -54.51 7.91 21.65 0.17 -54.34 16 11 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 C 0.13 5.18 6.12 85.63 0.52 5.70 16 16 C 0.49 18.41 7.89 87.66 0.69 19.11 16 17 O -0.56 -25.63 16.44 -3.04 -0.05 -25.68 16 18 N -0.72 -20.93 5.53 -466.79 -2.58 -23.51 16 19 C 0.07 1.70 5.45 85.63 0.47 2.17 16 20 C 0.43 9.76 7.00 26.42 0.19 9.95 16 21 O -0.48 -12.96 16.04 -3.53 -0.06 -13.01 16 22 C -0.34 -6.23 6.23 22.76 0.14 -6.09 16 23 C -0.04 -0.55 9.95 21.78 0.22 -0.34 16 24 C -0.17 -1.71 10.14 21.06 0.21 -1.50 16 25 C -0.21 -1.82 10.93 66.86 0.73 -1.09 16 26 S 0.25 3.21 22.42 -56.49 -1.27 1.94 16 27 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 28 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 30 H 0.07 2.87 8.02 -2.39 -0.02 2.86 16 31 H 0.10 5.56 6.31 -2.39 -0.02 5.55 16 32 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.10 3.66 8.00 -2.39 -0.02 3.64 16 34 H 0.09 3.23 8.11 -2.39 -0.02 3.21 16 35 H 0.41 10.74 7.44 -92.71 -0.69 10.05 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.15 2.23 8.02 -2.91 -0.02 2.21 16 39 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 40 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 Total: -1.00 -77.41 366.59 3.85 -73.56 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.40 Total: 20.25 kcal Atomic # 6 Polarization: 44.68 SS G_CDS: 6.51 Total: 51.18 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -3.52 Total: -107.63 kcal Atomic # 8 Polarization: -87.80 SS G_CDS: -0.30 Total: -88.10 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.27 Total: 1.94 kcal Total: -77.41 3.85 -73.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362240009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.668 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds