Wall clock time and date at job start Sat Apr 11 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47238 * 2 1 4 4 S 1.65601 * 120.00050 * 164.99684 * 3 2 1 5 5 O 1.42109 * 104.27574 * 308.93123 * 4 3 2 6 6 O 1.42090 * 104.27462 * 181.07311 * 4 3 2 7 7 C 1.81400 * 104.44824 * 64.99857 * 4 3 2 8 8 H 1.09002 * 110.64106 * 64.29961 * 7 4 3 9 9 C 1.55162 * 110.72047 * 301.15720 * 7 4 3 10 10 C 1.54912 * 101.57717 * 205.95876 * 9 7 4 11 11 N 1.47422 * 104.83500 * 37.00946 * 10 9 7 12 12 S 1.65597 * 125.64507 * 155.90275 * 11 10 9 13 13 O 1.42102 * 104.27513 * 206.04434 * 12 11 10 14 14 O 1.42096 * 104.28205 * 333.90675 * 12 11 10 15 15 C 1.81410 * 104.44681 * 89.98106 * 12 11 10 16 16 C 1.53001 * 109.47059 * 179.97438 * 15 12 11 17 17 C 1.50693 * 109.47078 * 179.97438 * 16 15 12 18 18 H 1.08003 * 120.00092 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00334 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99601 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.47321 * 89.99899 * 21 19 17 23 23 H 1.48495 * 109.47042 * 210.00112 * 21 19 17 24 24 H 1.48506 * 109.47105 * 330.00196 * 21 19 17 25 25 C 1.47018 * 108.70074 * 335.87099 * 11 10 9 26 26 H 1.09004 * 109.46517 * 60.00524 * 1 2 3 27 27 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47401 * 300.00347 * 1 2 3 29 29 H 1.08997 * 109.47122 * 239.99339 * 2 1 3 30 30 H 1.09005 * 109.46850 * 120.00177 * 2 1 3 31 31 H 0.96995 * 119.99728 * 345.00087 * 3 2 1 32 32 H 1.08999 * 111.00577 * 324.02907 * 9 7 4 33 33 H 1.08996 * 111.00139 * 87.88675 * 9 7 4 34 34 H 1.09003 * 110.36123 * 155.85332 * 10 9 7 35 35 H 1.09001 * 110.36394 * 278.16548 * 10 9 7 36 36 H 1.09000 * 109.46839 * 299.99515 * 15 12 11 37 37 H 1.08995 * 109.47101 * 59.99365 * 15 12 11 38 38 H 1.08998 * 109.47274 * 300.00354 * 16 15 12 39 39 H 1.09006 * 109.46873 * 59.99472 * 16 15 12 40 40 H 0.97003 * 120.00004 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.88087 * 241.63802 * 25 11 10 42 42 H 1.09003 * 109.87911 * 120.47955 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7001 0.3713 5 8 3.8180 1.0141 1.5966 6 8 3.6994 3.1156 0.2965 7 6 4.5451 0.9242 -0.9689 8 1 4.3241 1.4038 -1.9225 9 6 4.2505 -0.5976 -1.0386 10 6 5.5502 -1.1366 -1.6868 11 7 6.6286 -0.3123 -1.1117 12 16 8.2186 -0.7567 -0.9825 13 8 8.7066 0.0024 0.1151 14 8 8.1829 -2.1764 -0.9332 15 6 8.9736 -0.1924 -2.5325 16 6 10.4616 -0.5486 -2.5343 17 6 11.0886 -0.0803 -3.8221 18 1 10.4861 0.4208 -4.5652 19 6 12.4314 -0.2926 -4.0522 20 7 12.9788 0.1165 -5.1759 21 14 13.4735 -1.1600 -2.7673 22 1 13.4532 -2.6234 -3.0190 23 1 14.8708 -0.6636 -2.8458 24 1 12.9248 -0.8826 -1.4155 25 6 6.0589 0.9699 -0.6726 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.4151 2.1089 -0.2174 32 1 4.1093 -1.0143 -0.0413 33 1 3.3858 -0.7996 -1.6707 34 1 5.6958 -2.1856 -1.4289 35 1 5.5139 -1.0127 -2.7691 36 1 8.4820 -0.6796 -3.3746 37 1 8.8588 0.8880 -2.6203 38 1 10.9529 -0.0612 -1.6922 39 1 10.5767 -1.6290 -2.4462 40 1 13.9235 -0.0325 -5.3376 41 1 6.5201 1.7889 -1.2245 42 1 6.2235 1.1018 0.3969 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371399924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:29 Heat of formation + Delta-G solvation = -174.296966 kcal Electronic energy + Delta-G solvation = -26248.977085 eV Core-core repulsion = 22289.154282 eV Total energy + Delta-G solvation = -3959.822804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.61066 -38.29001 -38.25448 -37.13243 -37.12447 -36.76101 -35.91939 -33.49772 -32.34002 -30.55421 -30.28539 -27.91434 -24.39755 -23.82947 -23.01417 -22.66675 -20.40605 -20.13823 -19.50635 -18.78887 -18.56109 -18.00923 -17.28472 -17.17457 -17.09945 -16.40194 -16.31013 -15.70431 -15.52763 -15.31152 -14.98959 -14.84344 -14.51604 -14.33321 -14.08791 -13.83177 -13.55015 -13.33400 -13.28544 -13.24175 -13.16617 -13.09782 -13.00223 -12.94267 -12.90079 -12.49908 -12.43362 -12.32507 -12.25172 -12.08481 -11.97319 -11.73439 -11.52165 -11.33648 -10.85857 -10.31475 -10.06377 -8.38114 -6.43912 -0.93870 -0.77516 1.30756 1.33256 1.42912 1.59619 1.71130 2.28136 2.61363 2.73036 2.90592 2.95865 3.10758 3.14051 3.45038 3.85402 3.89861 4.02090 4.06180 4.09326 4.23535 4.33319 4.43028 4.51958 4.53244 4.56601 4.63599 4.71084 4.87930 4.95202 5.01688 5.04623 5.09506 5.17935 5.22497 5.30695 5.43008 5.45275 6.14676 6.14728 6.62065 7.20574 8.77222 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026374 B = 0.002673 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.392078 B =10470.818864 C =10585.324059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.090 3.910 3 N -1.105 6.105 4 S 2.629 3.371 5 O -0.987 6.987 6 O -0.990 6.990 7 C -0.591 4.591 8 H 0.192 0.808 9 C -0.112 4.112 10 C 0.104 3.896 11 N -1.012 6.012 12 S 2.627 3.373 13 O -0.990 6.990 14 O -0.979 6.979 15 C -0.583 4.583 16 C -0.019 4.019 17 C -0.526 4.526 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.939 5.939 21 Si 0.924 3.076 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.251 1.251 25 C 0.123 3.877 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.426 0.574 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.270 0.730 41 H 0.105 0.895 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.580 -1.088 6.875 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.035 4.035 3 N -0.869 5.869 4 S 2.722 3.278 5 O -0.977 6.977 6 O -0.980 6.980 7 C -0.703 4.703 8 H 0.209 0.791 9 C -0.151 4.151 10 C -0.020 4.020 11 N -0.851 5.851 12 S 2.726 3.274 13 O -0.980 6.980 14 O -0.970 6.970 15 C -0.715 4.715 16 C -0.058 4.058 17 C -0.565 4.565 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.578 5.578 21 Si 0.747 3.253 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.175 1.175 25 C -0.004 4.004 26 H 0.092 0.908 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.263 0.737 32 H 0.109 0.891 33 H 0.168 0.832 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.549 -1.232 8.370 29.776 hybrid contribution 0.880 0.255 -0.936 1.310 sum -27.669 -0.977 7.434 28.667 Atomic orbital electron populations 1.21979 0.93147 1.03876 1.02873 1.21837 0.97496 0.80719 1.03445 1.55281 1.27285 1.15853 1.88469 1.04263 0.74554 0.73170 0.75813 1.93576 1.85523 1.76630 1.41991 1.93574 1.86225 1.30388 1.87819 1.31741 1.05718 1.10622 1.22186 0.79091 1.23087 0.99660 0.87879 1.04453 1.22447 0.84495 0.95468 0.99597 1.58470 1.23916 1.25974 1.76760 1.04365 0.72478 0.73586 0.76993 1.93517 1.79963 1.73446 1.51099 1.93512 1.85695 1.30091 1.87660 1.30310 1.07066 1.13410 1.20757 1.19392 0.90622 0.97554 0.98216 1.21149 0.94730 1.38518 1.02147 0.93050 1.25860 0.99329 0.95934 0.97351 1.69999 1.13384 1.48172 1.26270 0.86042 0.78639 0.79980 0.80683 1.18375 1.19957 1.17501 1.21562 0.91193 0.87110 1.00540 0.90846 0.89748 0.92763 0.88261 0.91062 0.73706 0.89081 0.83230 0.89259 0.87990 0.83630 0.84136 0.95127 0.94921 0.92090 0.87652 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 10.05 71.98 0.72 0.23 16 2 C 0.09 0.45 5.73 86.38 0.50 0.94 16 3 N -1.11 -9.04 5.89 -187.48 -1.10 -10.15 16 4 S 2.63 42.37 4.97 -56.49 -0.28 42.09 16 5 O -0.99 -24.07 17.12 -127.65 -2.19 -26.26 16 6 O -0.99 -22.83 18.08 -127.65 -2.31 -25.14 16 7 C -0.59 -6.76 3.68 31.78 0.12 -6.64 16 8 H 0.19 0.73 8.14 -2.39 -0.02 0.71 16 9 C -0.11 -0.97 4.84 31.99 0.15 -0.82 16 10 C 0.10 1.56 7.07 86.86 0.61 2.17 16 11 N -1.01 -23.48 3.62 -506.43 -1.83 -25.31 16 12 S 2.63 86.30 5.65 -56.49 -0.32 85.99 16 13 O -0.99 -38.96 17.60 -127.65 -2.25 -41.21 16 14 O -0.98 -36.29 17.28 -127.65 -2.21 -38.49 16 15 C -0.58 -20.18 6.12 71.98 0.44 -19.74 16 16 C -0.02 -0.86 4.05 29.85 0.12 -0.74 16 17 C -0.53 -29.37 9.66 25.60 0.25 -29.12 16 18 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 19 C 0.01 0.81 5.47 84.66 0.46 1.27 16 20 N -0.94 -57.27 13.96 21.45 0.30 -56.97 16 21 Si 0.92 43.68 27.47 68.60 1.88 45.56 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 25 C 0.12 2.47 6.51 86.73 0.56 3.04 16 26 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.10 -0.08 5.39 -2.39 -0.01 -0.10 16 30 H 0.07 0.54 7.69 -2.38 -0.02 0.52 16 31 H 0.43 2.25 8.62 -96.75 -0.83 1.42 16 32 H 0.09 0.90 7.58 -2.39 -0.02 0.89 16 33 H 0.15 -0.10 6.24 -2.39 -0.01 -0.12 16 34 H 0.09 1.43 7.67 -2.39 -0.02 1.41 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.15 4.39 8.14 -2.39 -0.02 4.37 16 37 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 38 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 39 H 0.03 1.47 7.57 -2.38 -0.02 1.46 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.44 7.73 -2.39 -0.02 1.42 16 Total: -1.00 -88.16 362.70 -6.21 -94.37 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 0.15 Total: 4.92 kcal Atomic # 6 Polarization: -53.35 SS G_CDS: 3.94 Total: -49.41 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -2.64 Total: -92.43 kcal Atomic # 8 Polarization: -122.15 SS G_CDS: -8.95 Total: -131.10 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Atomic # 16 Polarization: 128.67 SS G_CDS: -0.60 Total: 128.07 kcal Total: -88.16 -6.21 -94.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371399924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.923 kcal (2) G-P(sol) polarization free energy of solvation -88.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds