Wall clock time and date at job start Sat Apr 11 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.46510 * 120.00089 * 59.99586 * 12 2 1 14 14 S 1.65604 * 120.00327 * 240.00206 * 12 2 1 15 15 O 1.42103 * 106.40430 * 203.53883 * 14 12 2 16 16 O 1.42102 * 106.39828 * 336.45857 * 14 12 2 17 17 N 1.65595 * 107.21718 * 89.99813 * 14 12 2 18 18 C 1.46504 * 119.99839 * 269.99660 * 17 14 12 19 19 C 1.46500 * 120.00250 * 90.00578 * 17 14 12 20 20 H 1.09000 * 110.01050 * 359.29309 * 19 17 14 21 21 C 1.53879 * 110.02561 * 237.91527 * 19 17 14 22 22 C 1.54191 * 108.69184 * 193.57313 * 21 19 17 23 23 S 1.82923 * 105.10706 * 27.83461 * 22 21 19 24 24 O 1.42098 * 109.35137 * 244.51831 * 23 22 21 25 25 O 1.42096 * 109.35006 * 111.31936 * 23 22 21 26 26 C 1.55048 * 110.02715 * 120.67565 * 19 17 14 27 27 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 29 29 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.46654 * 90.00209 * 13 12 2 32 32 H 1.08993 * 109.47171 * 209.99894 * 13 12 2 33 33 H 1.08996 * 109.46700 * 330.00687 * 13 12 2 34 34 H 1.09001 * 109.46661 * 90.00390 * 18 17 14 35 35 H 1.08991 * 109.47384 * 209.99917 * 18 17 14 36 36 H 1.09002 * 109.47272 * 330.01088 * 18 17 14 37 37 H 1.09001 * 109.64584 * 313.38119 * 21 19 17 38 38 H 1.09003 * 109.64458 * 73.67145 * 21 19 17 39 39 H 1.09001 * 110.27031 * 268.94652 * 22 21 19 40 40 H 1.08987 * 110.42850 * 146.80611 * 22 21 19 41 41 H 1.08997 * 110.78628 * 279.99114 * 26 19 17 42 42 H 1.09000 * 110.79292 * 43.26823 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.4469 2.1629 3.1784 19 6 1.5813 0.0697 4.6064 20 1 2.0426 -0.9178 4.5993 21 6 0.0502 -0.0644 4.6826 22 6 -0.3350 -0.5306 6.1009 23 16 0.9975 0.0951 7.1868 24 8 1.6973 -1.0036 7.7544 25 8 0.4792 1.1172 8.0269 26 6 2.0224 0.8529 5.8696 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.7011 1.1560 -3.4844 31 1 2.4157 -2.7377 0.9716 32 1 1.6238 -2.2853 2.5001 33 1 0.6904 -2.3002 0.9845 34 1 0.5068 2.1095 2.6294 35 1 1.2794 2.6496 4.1391 36 1 2.1722 2.7370 2.6017 37 1 -0.4129 0.9005 4.4761 38 1 -0.2904 -0.7964 3.9502 39 1 -0.3771 -1.6190 6.1423 40 1 -1.2940 -0.1039 6.3943 41 1 3.0831 0.7001 6.0687 42 1 1.7991 1.9146 5.7643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:33 Heat of formation + Delta-G solvation = -130.673633 kcal Electronic energy + Delta-G solvation = -27633.752106 eV Core-core repulsion = 23675.820952 eV Total energy + Delta-G solvation = -3957.931154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -38.26793 -37.30138 -36.88911 -36.27828 -36.26511 -35.38799 -33.53575 -32.66282 -29.87095 -29.19720 -26.83772 -25.71521 -25.21902 -24.79540 -21.37958 -20.71849 -19.14863 -18.82937 -17.78814 -17.14323 -17.04820 -16.52416 -16.37085 -15.94106 -15.56075 -15.03817 -14.77822 -14.39272 -14.30066 -14.02567 -13.59236 -13.36829 -12.99058 -12.93792 -12.69276 -12.51880 -12.43851 -12.30745 -12.19470 -12.09049 -11.87051 -11.63222 -11.49929 -11.46382 -11.33489 -11.29269 -11.04037 -10.95741 -10.86268 -10.68052 -10.54961 -10.36625 -10.09274 -9.36630 -9.15942 -8.51757 -8.08494 -6.14235 -4.20907 -0.27733 0.95128 2.21305 3.14690 3.25940 3.30655 3.31114 3.34342 3.68552 3.86537 4.07369 4.18110 4.32341 4.35183 4.48430 4.54902 4.71894 4.99869 5.12732 5.17355 5.17928 5.35999 5.43872 5.45043 5.60362 5.66644 5.88522 5.91834 6.02138 6.25024 6.40754 6.52979 6.66843 6.70666 6.91402 7.34553 7.54025 7.70298 7.95574 8.19341 8.80940 9.45294 10.91325 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.025481 B = 0.003425 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.580216 B = 8172.235350 C = 8283.876996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.988 5.988 13 C 0.108 3.892 14 S 2.773 3.227 15 O -0.990 6.990 16 O -0.965 6.965 17 N -0.999 5.999 18 C 0.078 3.922 19 C 0.153 3.847 20 H 0.121 0.879 21 C -0.129 4.129 22 C -0.588 4.588 23 S 2.390 3.610 24 O -0.933 6.933 25 O -0.939 6.939 26 C -0.605 4.605 27 H 0.033 0.967 28 H 0.010 0.990 29 H 0.093 0.907 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 -0.244 15.215 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.831 5.831 13 C -0.039 4.039 14 S 2.783 3.217 15 O -0.974 6.974 16 O -0.949 6.949 17 N -0.835 5.835 18 C -0.067 4.067 19 C 0.043 3.957 20 H 0.139 0.861 21 C -0.169 4.169 22 C -0.719 4.719 23 S 2.572 3.428 24 O -0.930 6.930 25 O -0.936 6.936 26 C -0.736 4.736 27 H 0.052 0.948 28 H 0.029 0.971 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.997 -0.086 16.042 16.532 hybrid contribution -0.322 -0.405 -1.776 1.850 sum -4.319 -0.492 14.266 14.913 Atomic orbital electron populations 1.22124 0.98228 0.99742 1.00620 1.18750 0.91292 0.92990 0.80458 0.92329 1.21285 1.31695 1.13157 0.90010 0.92006 1.24895 0.94884 0.94997 0.98993 1.69837 1.36386 1.22686 1.23961 0.86554 0.79376 0.79606 0.81859 1.20222 1.21190 1.20136 1.57769 1.70001 1.19757 1.35544 1.21177 1.01962 0.82080 0.98645 1.02280 0.73829 0.73221 0.72373 1.93545 1.68940 1.60276 1.74618 1.93602 1.73632 1.55845 1.71808 1.58187 1.67387 1.24849 1.33096 1.21622 1.00781 0.82040 1.02254 1.21432 0.94456 0.96020 0.83750 0.86117 1.22343 0.94942 1.04975 0.94639 1.30463 1.17940 1.12901 1.10566 1.08996 0.79045 0.76665 0.78045 1.93643 1.71787 1.52302 1.75270 1.93618 1.78744 1.57773 1.63426 1.31107 1.15568 1.12528 1.14441 0.94764 0.97067 0.88823 0.92600 0.93059 0.93452 0.90808 0.91955 0.91084 0.89354 0.88729 0.87911 0.84138 0.84052 0.83702 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.95 37.16 0.33 -2.73 16 2 C 0.27 6.11 2.62 -69.09 -0.18 5.93 16 3 H 0.06 1.48 6.91 -51.93 -0.36 1.13 16 4 C -0.52 -13.47 8.37 -34.44 -0.29 -13.76 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.77 11.31 55.43 0.63 -23.14 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.99 -18.86 3.12 -115.85 -0.36 -19.22 16 13 C 0.11 1.74 9.53 59.85 0.57 2.31 16 14 S 2.77 50.32 6.06 -107.50 -0.65 49.67 16 15 O -0.99 -18.96 15.80 -57.17 -0.90 -19.86 16 16 O -0.97 -21.05 15.30 -57.17 -0.88 -21.93 16 17 N -1.00 -13.01 3.19 -112.96 -0.36 -13.37 16 18 C 0.08 0.88 9.48 59.85 0.57 1.44 16 19 C 0.15 1.55 2.95 -66.39 -0.20 1.36 16 20 H 0.12 1.24 6.97 -51.93 -0.36 0.87 16 21 C -0.13 -0.96 5.87 -25.65 -0.15 -1.11 16 22 C -0.59 -3.43 7.26 37.78 0.27 -3.16 16 23 S 2.39 20.19 6.11 -107.50 -0.66 19.53 16 24 O -0.93 -11.27 18.15 -57.71 -1.05 -12.32 16 25 O -0.94 -10.73 18.14 -57.71 -1.05 -11.78 16 26 C -0.61 -5.00 6.78 38.24 0.26 -4.74 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 30 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.61 7.79 -51.93 -0.40 0.20 16 33 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.55 6.29 -51.93 -0.33 0.22 16 36 H 0.09 1.13 7.02 -51.93 -0.36 0.77 16 37 H 0.09 0.60 7.28 -51.93 -0.38 0.23 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.14 0.59 8.14 -51.94 -0.42 0.16 16 41 H 0.14 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.15 0.95 6.34 -51.93 -0.33 0.62 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -35.86 355.84 -9.85 -45.71 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.01 Total: -1.30 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 1.09 Total: -12.85 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.09 Total: -55.74 kcal Atomic # 8 Polarization: -62.02 SS G_CDS: -3.87 Total: -65.89 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 70.51 SS G_CDS: -1.31 Total: 69.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.86 -9.85 -45.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.962 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds