Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47580 * 2 1 4 4 C 1.50701 * 109.46849 * 119.99890 * 2 1 3 5 5 H 1.08001 * 120.00114 * 114.84469 * 4 2 1 6 6 C 1.37877 * 120.00102 * 294.84018 * 4 2 1 7 7 N 1.31517 * 119.99834 * 0.96500 * 6 4 2 8 8 Si 1.86806 * 120.00184 * 180.96253 * 6 4 2 9 9 H 1.48494 * 109.46988 * 265.01426 * 8 6 4 10 10 H 1.48496 * 109.46798 * 145.01357 * 8 6 4 11 11 H 1.48500 * 109.46887 * 25.01377 * 8 6 4 12 12 N 1.46501 * 109.47177 * 239.99638 * 2 1 3 13 13 C 1.46505 * 119.99983 * 300.00629 * 12 2 1 14 14 S 1.65598 * 120.00159 * 120.00005 * 12 2 1 15 15 O 1.42105 * 106.40217 * 197.88783 * 14 12 2 16 16 O 1.42099 * 106.40210 * 330.80968 * 14 12 2 17 17 N 1.65605 * 107.21556 * 84.35030 * 14 12 2 18 18 C 1.46499 * 119.99987 * 63.30621 * 17 14 12 19 19 C 1.52997 * 108.89277 * 55.09139 * 18 17 14 20 20 C 1.52383 * 108.92566 * 296.41521 * 18 17 14 21 21 C 1.54206 * 112.29749 * 239.25898 * 20 18 17 22 22 S 1.83822 * 102.86036 * 25.04413 * 21 20 18 23 23 O 1.42102 * 109.81167 * 77.68873 * 22 21 20 24 24 O 1.42099 * 109.81269 * 212.03316 * 22 21 20 25 25 C 1.54211 * 108.92036 * 173.75635 * 18 17 14 26 26 H 1.09007 * 109.46766 * 56.95748 * 1 2 3 27 27 H 1.09003 * 109.47369 * 176.95589 * 1 2 3 28 28 H 1.09003 * 109.47136 * 296.96023 * 1 2 3 29 29 H 0.97001 * 119.99606 * 179.97438 * 7 6 4 30 30 H 1.08993 * 109.47437 * 90.43882 * 13 12 2 31 31 H 1.09002 * 109.46871 * 210.43896 * 13 12 2 32 32 H 1.09001 * 109.46735 * 330.43515 * 13 12 2 33 33 H 0.97003 * 119.99590 * 243.30475 * 17 14 12 34 34 H 1.08996 * 109.47365 * 50.61539 * 19 18 17 35 35 H 1.09002 * 109.46985 * 170.62294 * 19 18 17 36 36 H 1.09002 * 109.46838 * 290.61884 * 19 18 17 37 37 H 1.09000 * 108.92587 * 0.02562 * 20 18 17 38 38 H 1.09000 * 108.92110 * 118.51663 * 20 18 17 39 39 H 1.08999 * 110.73603 * 143.38926 * 21 20 18 40 40 H 1.09004 * 110.73535 * 266.52738 * 21 20 18 41 41 H 1.09002 * 110.72971 * 214.03629 * 25 18 17 42 42 H 1.08992 * 110.74163 * 337.35272 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5828 -1.6345 1.1337 6 6 1.7891 -0.1806 2.4800 7 7 1.1025 0.9348 2.5990 8 14 2.4348 -1.0470 4.0038 9 1 1.3751 -1.9261 4.5597 10 1 2.8236 -0.0366 5.0202 11 1 3.6191 -1.8668 3.6425 12 7 2.0183 -0.6907 -1.1961 13 6 1.6643 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2862 15 8 2.9279 -0.6404 -3.4898 16 8 2.5952 1.4826 -2.2132 17 7 4.5292 0.0263 -1.7341 18 6 5.1928 -1.2746 -1.6172 19 6 5.1334 -1.9845 -2.9712 20 6 4.4523 -2.1161 -0.5849 21 6 5.3614 -2.5376 0.5872 22 16 6.6556 -1.2321 0.5913 23 8 6.1440 -0.0488 1.1890 24 8 7.8909 -1.7799 1.0308 25 6 6.6697 -1.0500 -1.2346 26 1 -0.3633 0.5604 -0.8615 27 1 -0.3634 -1.0262 -0.0546 28 1 -0.3633 0.4659 0.9160 29 1 0.9311 1.3073 3.4780 30 1 0.7417 -2.1444 -2.0060 31 1 2.4663 -2.5840 -1.9795 32 1 1.5217 -2.5949 -0.4708 33 1 5.0029 0.8363 -1.4882 34 1 5.4892 -1.3108 -3.7506 35 1 5.7638 -2.8733 -2.9434 36 1 4.1047 -2.2753 -3.1841 37 1 3.6148 -1.5388 -0.1932 38 1 4.0644 -3.0112 -1.0711 39 1 4.8073 -2.5347 1.5258 40 1 5.7996 -3.5185 0.4024 41 1 7.3063 -1.8073 -1.6922 42 1 6.9940 -0.0489 -1.5184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407977611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -121.015654 kcal Electronic energy + Delta-G solvation = -29082.666337 eV Core-core repulsion = 25125.153985 eV Total energy + Delta-G solvation = -3957.512352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -38.83004 -36.91967 -36.71354 -36.28477 -35.87442 -35.35705 -32.69228 -32.18020 -29.93844 -29.25562 -28.04184 -25.64382 -25.31542 -24.13439 -20.88545 -20.70635 -18.96928 -18.53100 -17.35377 -17.10149 -16.94466 -16.49212 -16.21813 -15.96501 -15.32587 -15.22642 -14.45215 -14.00094 -13.76854 -13.57627 -13.52191 -13.39375 -13.15929 -12.73027 -12.56631 -12.10886 -12.05727 -12.02611 -11.95735 -11.88667 -11.74065 -11.50688 -11.43681 -11.30027 -11.23670 -11.03600 -10.97950 -10.61973 -10.56032 -10.51645 -10.31144 -10.10769 -10.01636 -9.49258 -9.30617 -8.54161 -8.02856 -6.15718 -4.24481 0.10665 1.12943 2.49298 3.20742 3.23047 3.28913 3.30930 3.54782 3.90612 4.09246 4.27535 4.30262 4.50029 4.69253 4.77737 4.91798 5.00612 5.11955 5.18025 5.36093 5.39185 5.47060 5.67496 5.72775 5.88946 6.02044 6.13255 6.19311 6.37072 6.39755 6.52775 6.76379 6.80758 7.03473 7.12303 7.40571 7.52045 7.71384 7.93174 8.15427 8.75667 9.42559 10.90564 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009855 B = 0.008532 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.392447 B = 3281.031293 C = 5223.642275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.267 3.733 3 H 0.062 0.938 4 C -0.536 4.536 5 H 0.069 0.931 6 C 0.072 3.928 7 N -0.879 5.879 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.994 5.994 13 C 0.095 3.905 14 S 2.782 3.218 15 O -0.992 6.992 16 O -0.978 6.978 17 N -1.123 6.123 18 C 0.194 3.806 19 C -0.169 4.169 20 C -0.192 4.192 21 C -0.561 4.561 22 S 2.365 3.635 23 O -0.906 6.906 24 O -0.947 6.947 25 C -0.584 4.584 26 H 0.014 0.986 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.265 0.735 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.418 0.582 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.146 0.854 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.085 -8.026 -7.762 13.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.080 0.920 4 C -0.574 4.574 5 H 0.087 0.913 6 C -0.132 4.132 7 N -0.517 5.517 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.837 5.837 13 C -0.052 4.052 14 S 2.791 3.209 15 O -0.975 6.975 16 O -0.962 6.962 17 N -0.882 5.882 18 C 0.104 3.896 19 C -0.228 4.228 20 C -0.231 4.231 21 C -0.692 4.692 22 S 2.548 3.452 23 O -0.903 6.903 24 O -0.945 6.945 25 C -0.714 4.714 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.252 0.748 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.171 0.829 38 H 0.118 0.882 39 H 0.161 0.839 40 H 0.150 0.850 41 H 0.165 0.835 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.157 -7.128 -7.738 13.312 hybrid contribution 0.277 -0.649 0.808 1.073 sum 8.434 -7.776 -6.930 13.403 Atomic orbital electron populations 1.22015 0.98000 0.99192 1.00904 1.18773 0.91907 0.92978 0.79897 0.92025 1.21351 1.36458 1.09305 0.90331 0.91266 1.24873 0.94668 0.94774 0.98877 1.69890 1.38505 1.19134 1.24123 0.86652 0.78931 0.79448 0.83280 1.20690 1.20829 1.19960 1.57842 1.64537 1.21392 1.39963 1.21473 0.99414 0.82128 1.02151 1.01889 0.72405 0.73193 0.73392 1.93541 1.86753 1.72734 1.44496 1.93610 1.81423 1.33997 1.87150 1.56356 1.33958 1.12796 1.85084 1.20070 0.88384 0.83688 0.97489 1.22715 1.05203 1.00426 0.94496 1.23396 1.02274 1.03356 0.94061 1.30219 1.15672 1.15874 1.07420 1.09877 0.77309 0.78784 0.79230 1.93724 1.80130 1.43627 1.72812 1.93587 1.41578 1.79826 1.79460 1.30766 1.02188 1.12017 1.26433 0.96661 0.94779 0.89588 0.92490 0.93657 0.92538 0.89883 0.74806 0.91070 0.91301 0.88970 0.82929 0.88159 0.83857 0.84991 0.83547 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.10 37.16 0.34 -2.82 16 2 C 0.27 6.06 2.49 -69.08 -0.17 5.89 16 3 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 4 C -0.54 -12.58 7.16 -34.44 -0.25 -12.83 16 5 H 0.07 1.48 5.35 -52.49 -0.28 1.20 16 6 C 0.07 1.83 5.32 -17.82 -0.09 1.73 16 7 N -0.88 -23.55 11.66 55.43 0.65 -22.90 16 8 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 N -0.99 -18.55 1.69 -115.85 -0.20 -18.74 16 13 C 0.09 1.45 7.42 59.85 0.44 1.89 16 14 S 2.78 50.36 5.86 -107.50 -0.63 49.74 16 15 O -0.99 -17.68 13.70 -57.17 -0.78 -18.46 16 16 O -0.98 -21.45 16.89 -57.17 -0.97 -22.42 16 17 N -1.12 -16.76 5.41 0.79 0.00 -16.75 16 18 C 0.19 2.40 0.99 -131.50 -0.13 2.27 16 19 C -0.17 -1.86 7.02 37.16 0.26 -1.60 16 20 C -0.19 -2.50 3.83 -26.42 -0.10 -2.60 16 21 C -0.56 -6.72 7.40 37.79 0.28 -6.44 16 22 S 2.36 31.83 6.07 -107.50 -0.65 31.18 16 23 O -0.91 -16.37 18.16 -57.67 -1.05 -17.41 16 24 O -0.95 -14.62 18.16 -57.67 -1.05 -15.67 16 25 C -0.58 -5.78 6.43 37.79 0.24 -5.54 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 28 H 0.09 2.11 6.39 -51.93 -0.33 1.78 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.71 4.52 -51.93 -0.23 0.48 16 32 H 0.08 1.26 6.93 -51.93 -0.36 0.90 16 33 H 0.42 5.70 8.34 -34.47 -0.29 5.41 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 36 H 0.09 1.13 4.68 -51.93 -0.24 0.88 16 37 H 0.15 2.48 1.72 -51.93 -0.09 2.39 16 38 H 0.10 1.04 6.01 -51.93 -0.31 0.73 16 39 H 0.14 1.91 8.14 -51.93 -0.42 1.48 16 40 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.15 0.97 7.72 -51.93 -0.40 0.57 16 42 H 0.14 1.18 7.72 -51.93 -0.40 0.78 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -33.78 336.59 -9.16 -42.94 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.36 Total: 8.66 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 0.82 Total: -20.03 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.45 Total: -58.40 kcal Atomic # 8 Polarization: -70.12 SS G_CDS: -3.84 Total: -73.96 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 82.20 SS G_CDS: -1.28 Total: 80.92 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.78 -9.16 -42.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407977611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.076 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds