Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 13 13 C 1.46505 * 120.00155 * 299.99972 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00096 * 12 2 1 15 15 O 1.42095 * 106.40444 * 203.53750 * 14 12 2 16 16 O 1.42097 * 106.40082 * 336.46142 * 14 12 2 17 17 N 1.65604 * 107.21800 * 89.99874 * 14 12 2 18 18 C 1.46504 * 119.99990 * 65.00135 * 17 14 12 19 19 H 1.09000 * 109.38413 * 25.20752 * 18 17 14 20 20 C 1.52585 * 109.38207 * 265.52354 * 18 17 14 21 21 C 1.52595 * 110.64095 * 169.85451 * 20 18 17 22 22 C 1.53036 * 109.98486 * 69.98505 * 21 20 18 23 23 S 1.81670 * 109.00211 * 296.35442 * 22 21 20 24 24 O 1.42099 * 108.66147 * 299.97158 * 23 22 21 25 25 O 1.42095 * 108.66339 * 168.62698 * 23 22 21 26 26 C 1.53035 * 109.38443 * 144.99917 * 18 17 14 27 27 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 28 28 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 32 32 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 33 33 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 34 34 H 0.97000 * 120.00229 * 245.00178 * 17 14 12 35 35 H 1.09002 * 109.24692 * 290.15136 * 20 18 17 36 36 H 1.09004 * 109.24502 * 49.56186 * 20 18 17 37 37 H 1.08996 * 109.38765 * 309.83352 * 21 20 18 38 38 H 1.08996 * 109.29998 * 190.09095 * 21 20 18 39 39 H 1.08999 * 109.54887 * 176.49738 * 22 21 20 40 40 H 1.09002 * 109.62687 * 56.25625 * 22 21 20 41 41 H 1.08994 * 109.55216 * 303.65911 * 26 18 17 42 42 H 1.09003 * 109.55123 * 63.85336 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9703 0.1140 -2.2863 15 8 2.8227 -0.5648 -3.5258 16 8 2.6904 1.4971 -2.1194 17 7 4.5437 -0.1044 -1.8180 18 6 5.1357 -1.4443 -1.8414 19 1 4.6102 -2.0593 -2.5720 20 6 5.0054 -2.0797 -0.4603 21 6 5.3813 -3.5578 -0.5105 22 6 6.8866 -3.7071 -0.7424 23 16 7.3062 -3.0140 -2.3684 24 8 6.5861 -3.7255 -3.3656 25 8 8.7201 -2.9127 -2.4684 26 6 6.6116 -1.3408 -2.2324 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.9026 -0.5281 4.4376 31 1 0.7375 -2.1445 -1.9992 32 1 2.4628 -2.5821 -1.9862 33 1 1.5295 -2.5969 -0.4706 34 1 5.0734 0.6548 -1.5282 35 1 5.6668 -1.5644 0.2362 36 1 3.9758 -1.9825 -0.1158 37 1 4.8404 -4.0412 -1.3240 38 1 5.1121 -4.0303 0.4341 39 1 7.1569 -4.7626 -0.7151 40 1 7.4316 -3.1707 0.0344 41 1 6.7000 -0.8302 -3.1913 42 1 7.1526 -0.7806 -1.4697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407978122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -138.638087 kcal Electronic energy + Delta-G solvation = -28001.842574 eV Core-core repulsion = 24043.566055 eV Total energy + Delta-G solvation = -3958.276519 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.25242 -37.06564 -36.87812 -36.46109 -36.18516 -35.48712 -33.88614 -32.64027 -30.15775 -30.08274 -27.72245 -25.83728 -25.15671 -23.34717 -21.13653 -21.05282 -19.46841 -18.74488 -17.62136 -17.31420 -17.16372 -16.55350 -16.27389 -15.99649 -15.62895 -15.27075 -14.89711 -14.73409 -14.48901 -13.75322 -13.59040 -13.33998 -13.15420 -12.94435 -12.45701 -12.33118 -12.25901 -12.20917 -12.17208 -12.13884 -12.06861 -11.84976 -11.67931 -11.60915 -11.42884 -11.30672 -11.13396 -11.03298 -10.82193 -10.60174 -10.38866 -10.22279 -9.71667 -9.50847 -9.45384 -8.76792 -8.23245 -6.28841 -4.30492 -0.17700 0.99726 2.45820 3.15549 3.21757 3.28887 3.31044 3.45609 3.73537 3.89879 4.23300 4.26760 4.39602 4.51695 4.57363 4.74323 4.83529 5.03984 5.06568 5.10165 5.25672 5.41551 5.47015 5.51194 5.83373 5.90479 5.96881 6.07176 6.11671 6.20324 6.30345 6.39446 6.48216 6.54792 6.76807 7.00884 7.19741 7.27699 7.51938 8.29042 8.71842 9.32587 10.82583 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.004618 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.233180 B = 6061.801136 C = 6996.324568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.238 3.762 3 H 0.057 0.943 4 C -0.530 4.530 5 H 0.088 0.912 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.984 5.984 13 C 0.097 3.903 14 S 2.781 3.219 15 O -0.989 6.989 16 O -0.980 6.980 17 N -1.116 6.116 18 C 0.170 3.830 19 H 0.105 0.895 20 C -0.177 4.177 21 C -0.108 4.108 22 C -0.600 4.600 23 S 2.418 3.582 24 O -0.933 6.933 25 O -0.945 6.945 26 C -0.615 4.615 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.059 0.941 30 H 0.266 0.734 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.416 0.584 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.267 -3.994 -7.019 10.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.569 4.569 5 H 0.106 0.894 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.706 3.294 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.187 1.187 12 N -0.826 5.826 13 C -0.049 4.049 14 S 2.789 3.211 15 O -0.972 6.972 16 O -0.964 6.964 17 N -0.874 5.874 18 C 0.061 3.939 19 H 0.123 0.877 20 C -0.215 4.215 21 C -0.147 4.147 22 C -0.730 4.730 23 S 2.599 3.401 24 O -0.930 6.930 25 O -0.942 6.942 26 C -0.745 4.745 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.250 0.750 35 H 0.104 0.896 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.324 -4.040 -8.391 11.848 hybrid contribution -0.522 1.355 1.577 2.144 sum 6.802 -2.685 -6.814 9.996 Atomic orbital electron populations 1.22412 0.98753 1.01416 0.99194 1.19115 0.91079 0.93463 0.83008 0.92491 1.21222 1.33122 1.14346 0.88199 0.89422 1.24865 0.95436 0.96467 0.95782 1.69856 1.44979 1.40001 0.98021 0.87026 0.80876 0.83942 0.77517 1.20325 1.22266 1.18681 1.57482 1.64592 1.21654 1.38905 1.21373 0.99546 0.81512 1.02500 1.01903 0.72633 0.73135 0.73421 1.93581 1.85826 1.76210 1.41575 1.93598 1.83582 1.32389 1.86868 1.56076 1.32244 1.14065 1.85012 1.20409 0.90325 0.84937 0.98208 0.87739 1.22582 1.08118 0.94307 0.96539 1.21258 0.90173 0.97536 1.05693 1.30237 1.06910 1.13347 1.22485 1.08039 0.75435 0.78247 0.78352 1.93608 1.74427 1.70016 1.54982 1.93593 1.28031 1.86197 1.86406 1.30669 1.06884 1.24813 1.12118 0.93335 0.94709 0.92203 0.92397 0.93387 0.92692 0.89414 0.75011 0.89624 0.86026 0.89669 0.88419 0.84725 0.84636 0.84127 0.84044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.67 37.16 0.32 -2.85 16 2 C 0.24 4.98 2.21 -69.08 -0.15 4.83 16 3 H 0.06 1.28 5.97 -51.93 -0.31 0.97 16 4 C -0.53 -12.33 8.45 -34.44 -0.29 -12.62 16 5 H 0.09 2.06 5.61 -52.49 -0.29 1.77 16 6 C 0.08 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.89 -24.02 13.96 55.43 0.77 -23.25 16 8 Si 0.88 20.03 24.37 -169.99 -4.14 15.89 16 9 H -0.28 -6.19 6.87 56.52 0.39 -5.80 16 10 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.26 -5.90 6.53 56.52 0.37 -5.53 16 12 N -0.98 -17.48 2.56 -115.85 -0.30 -17.78 16 13 C 0.10 1.47 8.36 59.85 0.50 1.97 16 14 S 2.78 47.99 6.08 -107.50 -0.65 47.34 16 15 O -0.99 -18.34 16.54 -57.17 -0.95 -19.29 16 16 O -0.98 -19.82 16.70 -57.17 -0.95 -20.78 16 17 N -1.12 -15.00 5.52 -5.06 -0.03 -15.02 16 18 C 0.17 2.00 2.64 -68.12 -0.18 1.82 16 19 H 0.10 1.24 6.93 -51.93 -0.36 0.88 16 20 C -0.18 -2.05 5.22 -27.15 -0.14 -2.19 16 21 C -0.11 -1.01 5.73 -26.92 -0.15 -1.17 16 22 C -0.60 -4.61 6.35 37.18 0.24 -4.38 16 23 S 2.42 23.75 5.31 -107.50 -0.57 23.18 16 24 O -0.93 -12.32 17.94 -57.81 -1.04 -13.35 16 25 O -0.95 -12.06 18.10 -57.81 -1.05 -13.11 16 26 C -0.61 -5.52 5.87 37.18 0.22 -5.30 16 27 H 0.05 1.01 3.27 -51.93 -0.17 0.84 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.11 7.67 -51.93 -0.40 0.72 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.71 7.36 -51.93 -0.38 0.33 16 33 H 0.09 1.36 7.01 -51.93 -0.36 0.99 16 34 H 0.42 4.73 8.83 -34.48 -0.30 4.42 16 35 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.12 1.73 4.47 -51.93 -0.23 1.50 16 37 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.14 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -34.81 345.08 -9.23 -44.04 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.79 Total: 4.94 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 0.26 Total: -18.02 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.45 Total: -56.05 kcal Atomic # 8 Polarization: -62.54 SS G_CDS: -3.98 Total: -66.53 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.14 Total: 15.89 kcal Atomic # 16 Polarization: 71.74 SS G_CDS: -1.22 Total: 70.52 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.81 -9.23 -44.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407978122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.593 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds