Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99835 * 2 1 3 5 5 H 1.07995 * 120.00167 * 119.72028 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 N 1.46500 * 109.47007 * 239.99624 * 2 1 3 13 13 C 1.46505 * 120.00155 * 299.99972 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00096 * 12 2 1 15 15 O 1.42095 * 106.40444 * 203.53750 * 14 12 2 16 16 O 1.42097 * 106.40082 * 336.46142 * 14 12 2 17 17 N 1.65604 * 107.21800 * 89.99874 * 14 12 2 18 18 C 1.46504 * 119.99990 * 65.00135 * 17 14 12 19 19 H 1.09000 * 109.38413 * 25.20752 * 18 17 14 20 20 C 1.52585 * 109.38207 * 265.52354 * 18 17 14 21 21 C 1.52595 * 110.64095 * 169.85451 * 20 18 17 22 22 C 1.53036 * 109.98486 * 69.98505 * 21 20 18 23 23 S 1.81670 * 109.00211 * 296.35442 * 22 21 20 24 24 O 1.42099 * 108.66147 * 299.97158 * 23 22 21 25 25 O 1.42095 * 108.66339 * 168.62698 * 23 22 21 26 26 C 1.53035 * 109.38443 * 144.99917 * 18 17 14 27 27 H 1.09001 * 109.46832 * 300.00478 * 1 2 3 28 28 H 1.09002 * 109.47153 * 60.00287 * 1 2 3 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46748 * 89.99662 * 13 12 2 32 32 H 1.08997 * 109.47257 * 210.00179 * 13 12 2 33 33 H 1.09002 * 109.46769 * 330.00037 * 13 12 2 34 34 H 0.97000 * 120.00229 * 245.00178 * 17 14 12 35 35 H 1.09002 * 109.24692 * 290.15136 * 20 18 17 36 36 H 1.09004 * 109.24502 * 49.56186 * 20 18 17 37 37 H 1.08996 * 109.38765 * 309.83352 * 21 20 18 38 38 H 1.08996 * 109.29998 * 190.09095 * 21 20 18 39 39 H 1.08999 * 109.54887 * 176.49738 * 22 21 20 40 40 H 1.09002 * 109.62687 * 56.25625 * 22 21 20 41 41 H 1.08994 * 109.55216 * 303.65911 * 26 18 17 42 42 H 1.09003 * 109.55123 * 63.85336 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6495 -1.5911 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8729 2.6997 10 1 0.9760 1.9953 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9703 0.1140 -2.2863 15 8 2.8227 -0.5648 -3.5258 16 8 2.6904 1.4971 -2.1194 17 7 4.5437 -0.1044 -1.8180 18 6 5.1357 -1.4443 -1.8414 19 1 4.6102 -2.0593 -2.5720 20 6 5.0054 -2.0797 -0.4603 21 6 5.3813 -3.5578 -0.5105 22 6 6.8866 -3.7071 -0.7424 23 16 7.3062 -3.0140 -2.3684 24 8 6.5861 -3.7255 -3.3656 25 8 8.7201 -2.9127 -2.4684 26 6 6.6116 -1.3408 -2.2324 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.9026 -0.5281 4.4376 31 1 0.7375 -2.1445 -1.9992 32 1 2.4628 -2.5821 -1.9862 33 1 1.5295 -2.5969 -0.4706 34 1 5.0734 0.6548 -1.5282 35 1 5.6668 -1.5644 0.2362 36 1 3.9758 -1.9825 -0.1158 37 1 4.8404 -4.0412 -1.3240 38 1 5.1121 -4.0303 0.4341 39 1 7.1569 -4.7626 -0.7151 40 1 7.4316 -3.1707 0.0344 41 1 6.7000 -0.8302 -3.1913 42 1 7.1526 -0.7806 -1.4697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407978122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -168.795893 kcal Electronic energy + Delta-G solvation = -28003.150314 eV Core-core repulsion = 24043.566055 eV Total energy + Delta-G solvation = -3959.584259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.19526 -38.37297 -38.05037 -37.84082 -37.07582 -36.95501 -34.77945 -34.44584 -31.75955 -30.98672 -28.52085 -27.24514 -26.88358 -24.17481 -22.67755 -22.00360 -20.64613 -19.70909 -19.06148 -18.60785 -18.44485 -17.91184 -17.20919 -17.11263 -16.87719 -16.47373 -16.05996 -15.72734 -15.44616 -15.23764 -14.89918 -14.52864 -14.34407 -14.13346 -13.89167 -13.81327 -13.51064 -13.34949 -13.27110 -13.22406 -13.11799 -13.08788 -13.03732 -12.92327 -12.73057 -12.63165 -12.34370 -12.18089 -11.94926 -11.90303 -11.67502 -11.43162 -11.25325 -11.11254 -10.69299 -10.53684 -9.71153 -8.22564 -6.23444 -0.95223 -0.34955 1.33766 1.44070 1.48756 1.68842 1.95785 2.36415 2.57461 2.69972 2.94418 3.13268 3.37729 3.46181 3.62076 3.78652 3.87689 3.97900 4.03078 4.29227 4.32088 4.48360 4.52675 4.66011 4.70077 4.71551 4.80604 4.88670 4.92582 4.98222 5.13246 5.17079 5.27663 5.30353 5.47685 5.52966 5.58957 5.85338 6.12645 6.41759 6.84801 7.41442 8.90877 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.004618 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.233180 B = 6061.801136 C = 6996.324568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.239 3.761 3 H 0.044 0.956 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.034 3.966 7 N -0.931 5.931 8 Si 0.913 3.087 9 H -0.269 1.269 10 H -0.303 1.303 11 H -0.258 1.258 12 N -0.987 5.987 13 C 0.090 3.910 14 S 2.794 3.206 15 O -1.002 7.002 16 O -1.012 7.012 17 N -1.107 6.107 18 C 0.160 3.840 19 H 0.102 0.898 20 C -0.179 4.179 21 C -0.110 4.110 22 C -0.583 4.583 23 S 2.428 3.572 24 O -0.972 6.972 25 O -0.976 6.976 26 C -0.611 4.611 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.263 0.737 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.427 0.573 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.156 0.844 40 H 0.160 0.840 41 H 0.151 0.849 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.800 -4.297 -7.373 11.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.061 0.939 4 C -0.547 4.547 5 H 0.100 0.900 6 C -0.165 4.165 7 N -0.571 5.571 8 Si 0.743 3.257 9 H -0.196 1.196 10 H -0.231 1.231 11 H -0.183 1.183 12 N -0.828 5.828 13 C -0.055 4.055 14 S 2.803 3.197 15 O -0.985 6.985 16 O -0.996 6.996 17 N -0.869 5.869 18 C 0.052 3.948 19 H 0.120 0.880 20 C -0.218 4.218 21 C -0.149 4.149 22 C -0.716 4.716 23 S 2.614 3.386 24 O -0.969 6.969 25 O -0.973 6.973 26 C -0.741 4.741 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.263 0.737 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.169 0.831 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.855 -4.344 -8.795 12.567 hybrid contribution -0.644 1.403 1.650 2.259 sum 7.211 -2.941 -7.145 10.569 Atomic orbital electron populations 1.22392 0.97829 1.02292 0.99476 1.18890 0.91828 0.92705 0.83224 0.93870 1.21470 1.31212 1.13393 0.88664 0.89985 1.25381 0.96799 0.98354 0.96000 1.69948 1.47180 1.41652 0.98322 0.86421 0.80278 0.82018 0.77019 1.19552 1.23136 1.18302 1.57380 1.65210 1.22547 1.37678 1.21560 1.00982 0.80219 1.02761 1.01327 0.73170 0.72124 0.73109 1.93564 1.86391 1.76283 1.42261 1.93551 1.84490 1.34326 1.87228 1.55767 1.30953 1.15427 1.84761 1.20608 0.91929 0.83766 0.98497 0.88042 1.22559 1.06801 0.95990 0.96401 1.21267 0.91391 0.96026 1.06172 1.30117 1.05849 1.14939 1.20648 1.07542 0.74252 0.78072 0.78751 1.93557 1.74831 1.71093 1.57437 1.93555 1.29819 1.86678 1.87276 1.30636 1.04966 1.24718 1.13822 0.94293 0.93144 0.91105 0.92732 0.92294 0.90589 0.89886 0.73724 0.88701 0.88648 0.89198 0.87992 0.82570 0.82242 0.83103 0.81108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.17 8.67 71.98 0.62 -5.54 16 2 C 0.24 9.74 2.21 44.25 0.10 9.84 16 3 H 0.04 1.91 5.97 -2.39 -0.01 1.89 16 4 C -0.51 -23.28 8.45 25.60 0.22 -23.07 16 5 H 0.08 3.82 5.61 -2.91 -0.02 3.80 16 6 C 0.03 1.71 5.45 84.66 0.46 2.17 16 7 N -0.93 -50.37 13.96 21.45 0.30 -50.07 16 8 Si 0.91 40.75 24.37 68.60 1.67 42.42 16 9 H -0.27 -11.58 6.87 99.48 0.68 -10.90 16 10 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.26 -11.26 6.53 99.48 0.65 -10.61 16 12 N -0.99 -33.75 2.56 -520.43 -1.33 -35.08 16 13 C 0.09 2.59 8.36 127.77 1.07 3.65 16 14 S 2.79 93.04 6.08 -56.49 -0.34 92.70 16 15 O -1.00 -35.80 16.54 -128.00 -2.12 -37.91 16 16 O -1.01 -40.10 16.70 -128.00 -2.14 -42.24 16 17 N -1.11 -27.90 5.52 -169.91 -0.94 -28.84 16 18 C 0.16 3.45 2.64 44.86 0.12 3.56 16 19 H 0.10 2.25 6.93 -2.39 -0.02 2.23 16 20 C -0.18 -3.78 5.22 30.32 0.16 -3.63 16 21 C -0.11 -1.80 5.73 30.47 0.17 -1.62 16 22 C -0.58 -7.17 6.35 71.99 0.46 -6.71 16 23 S 2.43 43.08 5.31 -56.49 -0.30 42.78 16 24 O -0.97 -24.63 17.94 -127.40 -2.29 -26.91 16 25 O -0.98 -23.35 18.10 -127.40 -2.31 -25.65 16 26 C -0.61 -9.46 5.87 71.99 0.42 -9.03 16 27 H 0.04 1.56 3.27 -2.39 -0.01 1.55 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 2.51 7.67 -2.39 -0.02 2.49 16 30 H 0.26 13.77 8.31 -92.70 -0.77 12.99 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.84 7.36 -2.39 -0.02 1.82 16 33 H 0.08 2.46 7.01 -2.39 -0.02 2.45 16 34 H 0.43 8.91 8.83 -96.74 -0.85 8.05 16 35 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 36 H 0.10 2.59 4.47 -2.38 -0.01 2.58 16 37 H 0.09 1.39 8.01 -2.39 -0.02 1.37 16 38 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.17 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -73.78 345.08 -5.87 -79.65 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.12 Total: 19.55 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 3.80 Total: -30.38 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -1.97 Total: -114.00 kcal Atomic # 8 Polarization: -123.87 SS G_CDS: -8.85 Total: -132.72 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.67 Total: 42.42 kcal Atomic # 16 Polarization: 136.12 SS G_CDS: -0.64 Total: 135.47 kcal Total: -73.78 -5.87 -79.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407978122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.148 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds