Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 S 1.65598 * 119.99398 * 164.99895 * 13 12 2 15 15 O 1.42113 * 106.39881 * 178.53600 * 14 13 12 16 16 O 1.42097 * 106.40828 * 311.45492 * 14 13 12 17 17 C 1.76200 * 107.22225 * 65.00007 * 14 13 12 18 18 C 1.38656 * 119.77090 * 89.99500 * 17 14 13 19 19 C 1.37753 * 120.39530 * 180.02562 * 18 17 14 20 20 C 1.39538 * 119.73420 * 359.97438 * 19 18 17 21 21 N 1.36158 * 133.70819 * 179.97438 * 20 19 18 22 22 C 1.30618 * 108.71588 * 180.02562 * 21 20 19 23 23 O 1.35183 * 124.93099 * 180.02562 * 22 21 20 24 24 O 1.34384 * 110.13701 * 359.97438 * 22 21 20 25 25 C 1.35262 * 108.19091 * 359.97438 * 24 22 21 26 26 C 1.37999 * 119.76781 * 269.72600 * 17 14 13 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 36 36 H 0.96998 * 120.00163 * 344.99658 * 13 12 2 37 37 H 1.08000 * 119.80317 * 0.02562 * 18 17 14 38 38 H 1.08001 * 120.13337 * 180.02562 * 19 18 17 39 39 H 0.96699 * 113.99902 * 0.02562 * 23 22 21 40 40 H 1.08004 * 120.05064 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4866 -0.1417 -5.1122 11 1 3.6293 -1.7585 -3.7120 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 16 1.6256 -0.7779 3.9213 15 8 1.1154 0.1514 4.8677 16 8 1.0838 -2.0790 3.7399 17 6 3.3300 -0.9984 4.3095 18 6 4.0113 -0.0106 5.0043 19 6 5.3441 -0.1693 5.3142 20 6 6.0111 -1.3320 4.9263 21 7 7.2889 -1.7779 5.0756 22 6 7.3906 -2.9536 4.5157 23 8 8.5197 -3.6958 4.4736 24 8 6.2096 -3.3187 3.9885 25 6 5.3177 -2.3298 4.2253 26 6 3.9763 -2.1555 3.9249 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7095 1.1615 -3.4844 34 1 1.6766 -1.7488 1.2494 35 1 3.1299 -0.7208 1.2495 36 1 1.1849 0.8647 2.3729 37 1 3.4939 0.8887 5.3044 38 1 5.8705 0.6026 5.8558 39 1 9.2795 -3.2808 4.9043 40 1 3.4380 -2.9227 3.3881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416530476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = -94.904344 kcal Electronic energy + Delta-G solvation = -27547.608468 eV Core-core repulsion = 23455.784435 eV Total energy + Delta-G solvation = -4091.824032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.59764 -39.76001 -38.87410 -38.65359 -38.23985 -36.96214 -35.88833 -34.91419 -32.31447 -32.02996 -30.80674 -27.46522 -27.35690 -26.22993 -25.30759 -24.61272 -23.36569 -20.98995 -20.68246 -20.17827 -19.60634 -18.90182 -18.67928 -18.49602 -17.64992 -17.52371 -16.96288 -16.48163 -15.97820 -15.67405 -15.40793 -15.19001 -15.04803 -14.95482 -14.81387 -14.13449 -13.99480 -13.88402 -13.37535 -13.27843 -13.23730 -13.16402 -12.93618 -12.88278 -12.73278 -12.54605 -12.47530 -12.32437 -12.20339 -12.05452 -11.80747 -11.41979 -11.07813 -10.62761 -10.39734 -10.21852 -10.11406 -9.77970 -7.96157 -6.11736 -0.91785 -0.58607 -0.10556 0.38752 0.96921 1.45004 1.48629 1.55179 1.96792 2.19069 2.29274 2.49870 2.73030 3.08971 3.24363 3.27893 3.64008 3.78133 3.87117 4.10214 4.26839 4.42647 4.48546 4.60548 4.69868 4.80211 4.82881 4.84629 4.91607 5.13850 5.17943 5.26094 5.29556 5.30292 5.57141 5.74256 5.76459 5.76599 6.14564 6.24693 6.33106 6.39413 6.50421 6.95383 7.55943 9.02431 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.003765 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.908325 B = 7434.649605 C = 9150.987961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.054 3.946 3 C -0.124 4.124 4 C -0.524 4.524 5 H 0.053 0.947 6 C 0.026 3.974 7 N -0.901 5.901 8 Si 0.941 3.059 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.135 3.865 13 N -1.101 6.101 14 S 2.719 3.281 15 O -0.972 6.972 16 O -0.983 6.983 17 C -0.663 4.663 18 C -0.014 4.014 19 C -0.089 4.089 20 C 0.089 3.911 21 N -0.537 5.537 22 C 0.475 3.525 23 O -0.399 6.399 24 O -0.212 6.212 25 C -0.042 4.042 26 C 0.023 3.977 27 H 0.034 0.966 28 H 0.058 0.942 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.257 0.743 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.423 0.577 37 H 0.180 0.820 38 H 0.176 0.824 39 H 0.465 0.535 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.186 -2.291 16.461 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 C -0.182 4.182 4 C -0.563 4.563 5 H 0.071 0.929 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.768 3.232 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.010 3.990 13 N -0.865 5.865 14 S 2.808 3.192 15 O -0.962 6.962 16 O -0.973 6.973 17 C -0.750 4.750 18 C -0.035 4.035 19 C -0.108 4.108 20 C -0.023 4.023 21 N -0.289 5.289 22 C 0.227 3.773 23 O -0.204 6.204 24 O -0.107 6.107 25 C -0.091 4.091 26 C 0.003 3.997 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.261 0.739 37 H 0.197 0.803 38 H 0.193 0.807 39 H 0.331 0.669 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.759 -2.862 16.805 20.710 hybrid contribution 0.889 -0.464 -1.506 1.809 sum 12.648 -3.327 15.299 20.127 Atomic orbital electron populations 1.21729 0.97922 0.98716 1.00164 1.18298 0.92771 0.93166 0.90577 1.21695 0.98298 0.97953 1.00289 1.21363 1.31380 1.12123 0.91403 0.92908 1.25457 0.95314 0.95570 1.00997 1.69937 1.37288 1.23459 1.23324 0.85827 0.78716 0.78408 0.80209 1.20822 1.21330 1.19745 1.21406 0.97774 0.95582 0.84275 1.55306 1.78110 1.30856 1.22198 1.01023 0.73332 0.72819 0.72028 1.93558 1.78229 1.63742 1.60677 1.93554 1.76548 1.41205 1.86009 1.30866 1.26773 1.02157 1.15230 1.21123 0.93500 0.97521 0.91332 1.20665 0.93593 0.95396 1.01184 1.20079 0.88988 0.96386 0.96854 1.71324 1.18986 1.09591 1.29034 1.22648 0.83219 0.85022 0.86391 1.84737 1.16327 1.42849 1.76505 1.84381 1.18095 1.42221 1.66040 1.20068 0.92858 0.88957 1.07245 1.19694 0.88677 0.96514 0.94841 0.94668 0.92300 0.96192 0.95506 0.92437 0.94273 0.93307 0.91808 0.92017 0.73857 0.80316 0.80661 0.66904 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.69 8.08 71.98 0.58 -5.11 16 2 C 0.05 2.36 0.51 -52.93 -0.03 2.33 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.52 -26.31 8.01 25.60 0.21 -26.11 16 5 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 6 C 0.03 1.34 5.15 84.65 0.44 1.78 16 7 N -0.90 -47.72 9.35 21.45 0.20 -47.52 16 8 Si 0.94 41.70 29.54 68.60 2.03 43.73 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 12 C 0.14 4.90 5.05 86.38 0.44 5.34 16 13 N -1.10 -33.08 5.33 -187.48 -1.00 -34.07 16 14 S 2.72 77.00 5.73 -56.49 -0.32 76.67 16 15 O -0.97 -29.14 17.26 -128.00 -2.21 -31.35 16 16 O -0.98 -33.71 16.72 -128.00 -2.14 -35.86 16 17 C -0.66 -16.53 5.95 22.31 0.13 -16.39 16 18 C -0.01 -0.30 9.49 22.25 0.21 -0.09 16 19 C -0.09 -1.74 10.10 22.47 0.23 -1.51 16 20 C 0.09 2.14 7.23 39.28 0.28 2.43 16 21 N -0.54 -11.60 11.38 -422.74 -4.81 -16.41 16 22 C 0.48 9.50 9.54 130.42 1.24 10.74 16 23 O -0.40 -4.48 13.62 -62.36 -0.85 -5.33 16 24 O -0.21 -5.44 10.78 9.27 0.10 -5.34 16 25 C -0.04 -1.11 7.42 22.84 0.17 -0.94 16 26 C 0.02 0.60 9.52 22.29 0.21 0.81 16 27 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 28 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.06 2.78 6.07 -2.39 -0.01 2.76 16 32 H 0.04 1.37 6.60 -2.39 -0.02 1.36 16 33 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 34 H 0.06 2.37 7.75 -2.39 -0.02 2.35 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.42 11.81 6.47 -96.75 -0.63 11.18 16 37 H 0.18 2.75 7.59 -2.91 -0.02 2.73 16 38 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.47 -0.30 9.06 -74.06 -0.67 -0.97 16 40 H 0.16 3.97 7.59 -2.91 -0.02 3.95 16 Total: -1.00 -68.25 348.11 -4.49 -72.74 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.18 Total: 14.12 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 4.69 Total: -31.38 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -5.61 Total: -98.00 kcal Atomic # 8 Polarization: -72.77 SS G_CDS: -5.10 Total: -77.87 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 77.00 SS G_CDS: -0.32 Total: 76.67 kcal Total: -68.25 -4.49 -72.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416530476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.169 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds