Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 S 1.76202 * 119.97711 * 180.02562 * 7 6 5 9 9 O 1.42099 * 102.99731 * 336.14519 * 8 7 6 10 10 C 1.81401 * 103.00091 * 89.99632 * 8 7 6 11 11 C 1.50694 * 109.46902 * 180.02562 * 10 8 7 12 12 O 1.21280 * 120.00418 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99967 * 179.97438 * 11 10 8 14 14 C 1.46503 * 119.99826 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46618 * 180.02562 * 14 13 11 16 16 O 1.21289 * 120.00313 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99635 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99859 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99988 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99755 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99874 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99737 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46666 * 90.00106 * 22 20 18 24 24 H 1.48498 * 109.47172 * 210.00316 * 22 20 18 25 25 H 1.48497 * 109.47112 * 330.00363 * 22 20 18 26 26 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 27 27 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 28 28 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 30 30 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 32 32 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 33 33 H 1.08991 * 109.46927 * 300.00217 * 10 8 7 34 34 H 1.09001 * 109.47009 * 60.00011 * 10 8 7 35 35 H 0.96998 * 119.99718 * 0.02562 * 13 11 10 36 36 H 1.08991 * 109.47636 * 300.00001 * 14 13 11 37 37 H 1.09006 * 109.46915 * 60.00668 * 14 13 11 38 38 H 0.96998 * 119.99808 * 0.02562 * 17 15 14 39 39 H 0.97008 * 119.99646 * 179.97438 * 21 20 18 40 40 H 1.07997 * 120.02798 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 16 5.8154 2.6119 0.0005 9 8 6.0665 3.8941 -0.5583 10 6 6.2229 2.6324 1.7681 11 6 7.7180 2.7134 1.9379 12 8 8.4379 2.7538 0.9627 13 7 8.2553 2.7419 3.1737 14 6 9.7089 2.8201 3.3388 15 6 10.0474 2.8372 4.8072 16 8 9.1616 2.7884 5.6344 17 7 11.3344 2.9068 5.2013 18 6 11.6423 2.9229 6.5372 19 1 10.8536 2.8794 7.2737 20 6 12.9692 2.9941 6.9434 21 7 13.9288 3.0465 6.0472 22 14 13.3888 3.0153 8.7636 23 1 13.5753 1.6229 9.2448 24 1 14.6420 3.7838 8.9738 25 1 12.2826 3.6561 9.5192 26 6 3.4311 1.2848 0.0003 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3203 0.0108 31 1 1.3339 4.5114 0.0034 32 1 3.7922 4.6381 0.0022 33 1 5.7567 3.4980 2.2383 34 1 5.8524 1.7207 2.2369 35 1 7.6796 2.7099 3.9537 36 1 10.1751 1.9542 2.8690 37 1 10.0793 3.7316 2.8695 38 1 12.0427 2.9462 4.5398 39 1 14.8551 3.0965 6.3309 40 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424855551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -117.520655 kcal Electronic energy + Delta-G solvation = -25346.585832 eV Core-core repulsion = 21253.781083 eV Total energy + Delta-G solvation = -4092.804749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46369 -39.60916 -38.14120 -37.76004 -35.90695 -34.52578 -33.73823 -31.65589 -31.43031 -30.62661 -30.31424 -27.74614 -27.16977 -24.44166 -23.29742 -22.66692 -20.52242 -19.66115 -19.11004 -18.15597 -17.42211 -17.26052 -16.65569 -16.42504 -16.20891 -15.98957 -15.72368 -15.64469 -15.14813 -14.65703 -14.47861 -14.37622 -14.18538 -14.00355 -13.81151 -13.29707 -13.13717 -13.03036 -12.74321 -12.25021 -12.23259 -12.03892 -11.79263 -11.65384 -11.61208 -11.51911 -11.14161 -10.54009 -10.47584 -10.34338 -10.02802 -9.66041 -9.61875 -8.91104 -8.69546 -8.67049 -8.55520 -8.12665 -6.53529 -3.95716 0.46080 1.01874 1.51685 2.46719 2.64808 2.85646 3.10269 3.20569 3.24210 3.26705 3.36011 3.70890 3.74610 4.09571 4.32586 4.50564 4.62633 4.67204 4.77934 4.84359 4.85693 4.93223 4.98534 5.03770 5.11054 5.15039 5.33024 5.49172 5.78561 5.86209 5.89901 5.92273 5.96387 6.03540 6.21372 6.57047 6.93245 7.44032 7.64327 7.89292 8.27229 8.42663 9.02243 9.36544 9.84251 10.63198 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.001825 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.479639 B =15340.467765 C =15972.682610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.108 3.892 4 C -0.175 4.175 5 C -0.096 4.096 6 C -0.091 4.091 7 C -0.438 4.438 8 S 1.394 4.606 9 O -0.830 6.830 10 C -0.496 4.496 11 C 0.540 3.460 12 O -0.549 6.549 13 N -0.699 5.699 14 C 0.106 3.894 15 C 0.427 3.573 16 O -0.598 6.598 17 N -0.548 5.548 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.893 5.893 22 Si 0.934 3.066 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.269 1.269 26 C -0.072 4.072 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.413 0.587 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.330 -6.600 -14.003 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.062 3.938 4 C -0.194 4.194 5 C -0.116 4.116 6 C -0.110 4.110 7 C -0.532 4.532 8 S 1.586 4.414 9 O -0.826 6.826 10 C -0.631 4.631 11 C 0.324 3.676 12 O -0.428 6.428 13 N -0.352 5.352 14 C -0.022 4.022 15 C 0.212 3.788 16 O -0.485 6.485 17 N -0.182 5.182 18 C -0.436 4.436 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.533 5.533 22 Si 0.760 3.240 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.092 4.092 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.164 0.836 35 H 0.251 0.749 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.474 -6.718 -14.831 28.568 hybrid contribution -1.064 1.972 2.102 3.073 sum -24.538 -4.746 -12.729 28.047 Atomic orbital electron populations 1.23082 0.78293 1.04196 1.01312 1.86089 1.21429 1.26511 1.88816 1.19125 0.92646 0.84278 0.97722 1.21427 1.00185 0.92573 1.05240 1.21070 0.94749 0.97227 0.98508 1.21121 0.94019 0.98272 0.97569 1.28128 1.20744 0.96170 1.08182 1.70541 0.79804 1.07503 0.83558 1.93081 1.78890 1.43479 1.67115 1.28220 0.99246 1.10055 1.25618 1.19432 0.88230 0.76404 0.83494 1.90742 1.62421 1.51161 1.38514 1.45668 1.08155 1.73074 1.08340 1.21030 0.81065 1.03513 0.96552 1.19726 0.84170 0.85760 0.89112 1.90496 1.46892 1.57469 1.53672 1.41797 1.05423 1.62275 1.08730 1.19731 0.92901 1.48213 0.82713 0.87671 1.25334 0.95202 0.96718 1.00440 1.69614 1.00586 1.48981 1.34139 0.85804 0.78050 0.78423 0.81696 1.20229 1.20777 1.19348 1.20115 0.91270 0.97270 1.00525 0.92668 0.87977 0.92631 0.85229 0.85510 0.85226 0.86383 0.83588 0.74873 0.89368 0.89658 0.76977 0.91544 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.46 10.50 -19.41 -0.20 -2.66 16 3 C 0.11 0.92 6.69 -39.22 -0.26 0.66 16 4 C -0.18 -1.38 9.04 -39.43 -0.36 -1.74 16 5 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 6 C -0.09 -0.96 9.44 -39.56 -0.37 -1.33 16 7 C -0.44 -4.18 5.61 -39.61 -0.22 -4.40 16 8 S 1.39 14.26 12.68 -107.50 -1.36 12.90 16 9 O -0.83 -13.56 16.89 -35.23 -0.60 -14.15 16 10 C -0.50 -5.18 6.37 36.00 0.23 -4.95 16 11 C 0.54 8.07 7.85 -10.99 -0.09 7.98 16 12 O -0.55 -9.69 15.86 5.56 0.09 -9.60 16 13 N -0.70 -11.31 5.53 -61.47 -0.34 -11.65 16 14 C 0.11 1.92 6.15 -5.19 -0.03 1.89 16 15 C 0.43 9.68 7.85 -10.98 -0.09 9.59 16 16 O -0.60 -15.17 15.24 5.55 0.08 -15.09 16 17 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16 18 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.69 13.05 55.50 0.72 -22.97 16 22 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 C -0.07 -0.58 9.69 -39.43 -0.38 -0.96 16 27 H 0.05 0.19 7.68 -51.93 -0.40 -0.21 16 28 H 0.10 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 30 H 0.13 0.70 6.30 -52.49 -0.33 0.37 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.13 1.50 7.45 -52.48 -0.39 1.11 16 33 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.15 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.41 6.51 7.44 -40.82 -0.30 6.21 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.40 9.36 7.90 -40.82 -0.32 9.03 16 39 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -37.26 366.34 -7.00 -44.26 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -4.61 Total: 12.80 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.22 Total: -1.23 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.33 Total: -48.14 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.63 Total: -41.50 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 14.26 SS G_CDS: -1.36 Total: 12.90 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.26 -7.00 -44.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424855551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.261 kcal (2) G-P(sol) polarization free energy of solvation -37.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds