Wall clock time and date at job start Sat Apr 11 2020 05:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 8 8 S 1.76202 * 119.97711 * 180.02562 * 7 6 5 9 9 O 1.42099 * 102.99731 * 336.14519 * 8 7 6 10 10 C 1.81401 * 103.00091 * 89.99632 * 8 7 6 11 11 C 1.50694 * 109.46902 * 180.02562 * 10 8 7 12 12 O 1.21280 * 120.00418 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99967 * 179.97438 * 11 10 8 14 14 C 1.46503 * 119.99826 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46618 * 180.02562 * 14 13 11 16 16 O 1.21289 * 120.00313 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99635 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99859 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99988 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99755 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99874 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99737 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46666 * 90.00106 * 22 20 18 24 24 H 1.48498 * 109.47172 * 210.00316 * 22 20 18 25 25 H 1.48497 * 109.47112 * 330.00363 * 22 20 18 26 26 C 1.38171 * 120.05202 * 359.97438 * 7 6 5 27 27 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 28 28 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 30 30 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 32 32 H 1.08006 * 119.94478 * 180.25913 * 6 5 4 33 33 H 1.08991 * 109.46927 * 300.00217 * 10 8 7 34 34 H 1.09001 * 109.47009 * 60.00011 * 10 8 7 35 35 H 0.96998 * 119.99718 * 0.02562 * 13 11 10 36 36 H 1.08991 * 109.47636 * 300.00001 * 14 13 11 37 37 H 1.09006 * 109.46915 * 60.00668 * 14 13 11 38 38 H 0.96998 * 119.99808 * 0.02562 * 17 15 14 39 39 H 0.97008 * 119.99646 * 179.97438 * 21 20 18 40 40 H 1.07997 * 120.02798 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 4.0560 2.5171 0.0004 8 16 5.8154 2.6119 0.0005 9 8 6.0665 3.8941 -0.5583 10 6 6.2229 2.6324 1.7681 11 6 7.7180 2.7134 1.9379 12 8 8.4379 2.7538 0.9627 13 7 8.2553 2.7419 3.1737 14 6 9.7089 2.8201 3.3388 15 6 10.0474 2.8372 4.8072 16 8 9.1616 2.7884 5.6344 17 7 11.3344 2.9068 5.2013 18 6 11.6423 2.9229 6.5372 19 1 10.8536 2.8794 7.2737 20 6 12.9692 2.9941 6.9434 21 7 13.9288 3.0465 6.0472 22 14 13.3888 3.0153 8.7636 23 1 13.5753 1.6229 9.2448 24 1 14.6420 3.7838 8.9738 25 1 12.2826 3.6561 9.5192 26 6 3.4311 1.2848 0.0003 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3203 0.0108 31 1 1.3339 4.5114 0.0034 32 1 3.7922 4.6381 0.0022 33 1 5.7567 3.4980 2.2383 34 1 5.8524 1.7207 2.2369 35 1 7.6796 2.7099 3.9537 36 1 10.1751 1.9542 2.8690 37 1 10.0793 3.7316 2.8695 38 1 12.0427 2.9462 4.5398 39 1 14.8551 3.0965 6.3309 40 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424855551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:39 Heat of formation + Delta-G solvation = -147.553773 kcal Electronic energy + Delta-G solvation = -25347.888166 eV Core-core repulsion = 21253.781083 eV Total energy + Delta-G solvation = -4094.107083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04806 -40.99089 -39.88120 -38.35174 -36.97268 -36.27319 -35.34886 -33.39208 -32.29596 -31.55136 -31.12060 -28.70720 -28.13581 -26.28343 -23.93421 -23.31511 -21.78261 -21.40490 -20.11277 -19.77210 -18.57968 -18.27916 -17.36405 -17.26602 -17.16039 -17.09644 -16.92118 -16.64253 -16.42440 -16.05096 -15.90669 -15.81544 -15.31376 -14.92154 -14.69660 -14.50090 -14.21802 -13.93453 -13.71350 -13.56522 -13.53684 -13.26937 -12.93005 -12.88562 -12.73948 -12.46211 -12.13345 -12.09844 -12.07310 -11.57444 -11.46436 -11.26971 -10.57471 -10.30225 -10.26101 -10.09336 -9.48759 -9.26937 -8.51427 -6.01760 -0.24198 0.35664 0.70668 1.36096 1.42901 1.46247 1.55386 1.68484 1.90189 2.05338 2.31411 2.38636 2.58908 2.89251 3.11600 3.15735 3.65484 3.78045 3.98720 4.11820 4.13353 4.21299 4.28571 4.42384 4.42738 4.44194 4.46539 4.49312 4.55029 4.77716 4.91853 5.12526 5.21098 5.26374 5.31002 5.37969 5.57949 5.90948 6.37183 6.40130 6.48498 7.02171 7.04037 7.43528 7.93649 8.65300 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.001825 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.479639 B =15340.467765 C =15972.682610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.101 3.899 4 C -0.174 4.174 5 C -0.102 4.102 6 C -0.119 4.119 7 C -0.440 4.440 8 S 1.436 4.564 9 O -0.898 6.898 10 C -0.490 4.490 11 C 0.538 3.462 12 O -0.577 6.577 13 N -0.702 5.702 14 C 0.117 3.883 15 C 0.432 3.568 16 O -0.625 6.625 17 N -0.559 5.559 18 C -0.338 4.338 19 H 0.086 0.914 20 C -0.010 4.010 21 N -0.915 5.915 22 Si 0.997 3.003 23 H -0.269 1.269 24 H -0.272 1.272 25 H -0.271 1.271 26 C -0.072 4.072 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.190 0.810 35 H 0.416 0.584 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.971 -8.079 -13.756 30.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.055 3.945 4 C -0.192 4.192 5 C -0.121 4.121 6 C -0.138 4.138 7 C -0.537 4.537 8 S 1.631 4.369 9 O -0.893 6.893 10 C -0.626 4.626 11 C 0.325 3.675 12 O -0.458 6.458 13 N -0.355 5.355 14 C -0.011 4.011 15 C 0.219 3.781 16 O -0.513 6.513 17 N -0.194 5.194 18 C -0.468 4.468 19 H 0.104 0.896 20 C -0.211 4.211 21 N -0.555 5.555 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.092 4.092 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.173 0.827 31 H 0.161 0.839 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.208 0.792 35 H 0.255 0.745 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.234 0.766 39 H 0.089 0.911 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -25.113 -8.198 -14.610 30.188 hybrid contribution -0.731 2.358 1.988 3.170 sum -25.844 -5.839 -12.622 29.349 Atomic orbital electron populations 1.23373 0.76510 1.05790 1.02187 1.86079 1.23317 1.26025 1.88589 1.19320 0.93012 0.84858 0.97332 1.21728 1.01582 0.91943 1.03979 1.21269 0.94118 0.98528 0.98233 1.21148 0.95209 0.97877 0.99605 1.27804 1.19600 0.96677 1.09580 1.69768 0.79692 1.05001 0.82460 1.92976 1.80923 1.46076 1.69371 1.28228 0.95875 1.12430 1.26053 1.20060 0.89876 0.75128 0.82425 1.90736 1.63637 1.52208 1.39215 1.45703 1.07202 1.73573 1.09065 1.20865 0.82750 1.04561 0.92929 1.20433 0.83216 0.83611 0.90861 1.90472 1.47529 1.58097 1.55240 1.41851 1.06238 1.63147 1.08182 1.19736 0.93125 1.50332 0.83566 0.89576 1.26132 0.94640 0.95752 1.04604 1.69679 1.00965 1.49007 1.35813 0.84863 0.77800 0.78724 0.76560 1.19385 1.19726 1.19586 1.20468 0.91827 0.97658 0.99209 0.91704 0.86192 0.91786 0.82723 0.83920 0.87311 0.86060 0.79235 0.74525 0.87643 0.89156 0.76646 0.91051 0.80378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.18 10.50 -92.38 -0.97 -5.15 16 3 C 0.10 1.48 6.69 22.51 0.15 1.63 16 4 C -0.17 -2.35 9.04 22.37 0.20 -2.15 16 5 C -0.10 -1.68 10.04 22.25 0.22 -1.46 16 6 C -0.12 -2.52 9.44 22.28 0.21 -2.31 16 7 C -0.44 -7.96 5.61 22.25 0.12 -7.84 16 8 S 1.44 28.61 12.68 -56.49 -0.72 27.90 16 9 O -0.90 -30.29 16.89 -148.98 -2.52 -32.81 16 10 C -0.49 -9.44 6.37 71.23 0.45 -8.99 16 11 C 0.54 15.52 7.85 87.65 0.69 16.21 16 12 O -0.58 -20.07 15.86 -3.03 -0.05 -20.12 16 13 N -0.70 -22.01 5.53 -466.78 -2.58 -24.59 16 14 C 0.12 4.16 6.15 85.63 0.53 4.69 16 15 C 0.43 19.66 7.85 87.66 0.69 20.34 16 16 O -0.63 -31.89 15.24 -3.06 -0.05 -31.93 16 17 N -0.56 -27.84 5.29 -306.98 -1.62 -29.46 16 18 C -0.34 -18.53 9.68 84.04 0.81 -17.72 16 19 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 20 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 21 N -0.91 -48.35 13.05 21.66 0.28 -48.07 16 22 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 C -0.07 -1.00 9.69 22.37 0.22 -0.78 16 27 H 0.06 0.24 7.68 -2.39 -0.02 0.23 16 28 H 0.12 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.06 0.26 7.65 -2.39 -0.02 0.24 16 30 H 0.16 1.20 6.30 -2.91 -0.02 1.19 16 31 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 32 H 0.11 2.70 7.45 -2.91 -0.02 2.67 16 33 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.19 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.42 12.69 7.44 -92.71 -0.69 12.00 16 36 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 37 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 38 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 39 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 40 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -81.51 366.34 -0.63 -82.13 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: -0.31 Total: 35.77 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.88 Total: 2.75 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -3.92 Total: -102.11 kcal Atomic # 8 Polarization: -86.43 SS G_CDS: -3.58 Total: -90.01 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 28.61 SS G_CDS: -0.72 Total: 27.90 kcal Total: -81.51 -0.63 -82.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424855551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.421 kcal (2) G-P(sol) polarization free energy of solvation -81.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds