Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.32582 * 124.58658 * 89.99769 * 3 2 1 5 5 C 1.44607 * 113.17713 * 179.97438 * 4 3 2 6 6 C 1.46474 * 123.61313 * 179.97438 * 5 4 3 7 7 O 1.21634 * 120.00421 * 179.97438 * 6 5 4 8 8 O 1.34883 * 120.00022 * 359.97438 * 6 5 4 9 9 C 1.45192 * 117.00122 * 179.97438 * 8 6 5 10 10 C 1.37270 * 112.77898 * 0.02562 * 5 4 3 11 11 N 1.38358 * 124.66276 * 179.97438 * 10 5 4 12 12 C 1.34778 * 119.99623 * 179.97438 * 11 10 5 13 13 O 1.21379 * 120.00032 * 0.02562 * 12 11 10 14 14 C 1.49294 * 119.99811 * 179.97438 * 12 11 10 15 15 O 1.21369 * 119.99796 * 0.02562 * 14 12 11 16 16 N 1.34779 * 120.00208 * 180.02562 * 14 12 11 17 17 C 1.46496 * 119.99983 * 180.02562 * 16 14 12 18 18 C 1.50696 * 109.47007 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00400 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00145 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99709 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00014 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47345 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47167 * 120.00151 * 22 20 18 25 25 H 1.48495 * 109.47245 * 239.99970 * 22 20 18 26 26 S 1.70446 * 110.67187 * 359.76417 * 10 5 4 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 29 29 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 30 30 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 31 31 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 32 32 H 1.08006 * 123.40930 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.47068 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46986 * 299.99736 * 9 8 6 35 35 H 1.09000 * 109.47474 * 59.99668 * 9 8 6 36 36 H 0.96994 * 120.00007 * 359.97438 * 11 10 5 37 37 H 0.97002 * 119.99646 * 359.97438 * 16 14 12 38 38 H 1.09001 * 109.46989 * 299.99877 * 17 16 14 39 39 H 1.08999 * 109.47318 * 59.99808 * 17 16 14 40 40 H 0.97002 * 119.99299 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2831 2.1304 1.0915 5 6 2.7561 3.4667 0.8054 6 6 3.1010 4.4437 1.8408 7 8 3.4935 5.5510 1.5256 8 8 2.9834 4.1156 3.1438 9 6 3.3433 5.1332 4.1149 10 6 2.8463 3.7218 -0.5403 11 7 3.2698 4.9200 -1.0874 12 6 3.3227 5.0681 -2.4260 13 8 2.9983 4.1507 -3.1515 14 6 3.7791 6.3612 -3.0164 15 8 4.1030 7.2787 -2.2910 16 7 3.8315 6.5096 -4.3550 17 6 4.2800 7.7782 -4.9343 18 6 4.2470 7.6833 -6.4379 19 1 3.9239 6.7696 -6.9144 20 6 4.6284 8.7634 -7.2054 21 7 5.0204 9.8767 -6.6252 22 14 4.5868 8.6460 -9.0692 23 1 4.1101 7.2979 -9.4698 24 1 3.6650 9.6773 -9.6098 25 1 5.9516 8.8698 -9.6098 26 16 2.3702 2.3577 -1.4446 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.1486 1.7488 2.0929 33 1 3.2025 4.7403 5.1219 34 1 4.3874 5.4141 3.9768 35 1 2.7099 6.0091 3.9751 36 1 3.5287 5.6532 -0.5077 37 1 3.5730 5.7761 -4.9347 38 1 3.6198 8.5811 -4.6059 39 1 5.2980 7.9878 -4.6060 40 1 5.2890 10.6364 -7.1652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425779204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -133.463940 kcal Electronic energy + Delta-G solvation = -26249.701266 eV Core-core repulsion = 22156.205164 eV Total energy + Delta-G solvation = -4093.496102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.07471 -40.36536 -38.48298 -37.86018 -36.58558 -35.56656 -34.43386 -33.22201 -32.43717 -28.91347 -28.32455 -27.63511 -25.63930 -24.16431 -23.80326 -22.29139 -21.18421 -20.57014 -19.98789 -18.48583 -18.30607 -17.27016 -16.86371 -16.57182 -16.10007 -16.00885 -15.96013 -15.42483 -15.10665 -14.66047 -14.36940 -14.31178 -14.11794 -13.72672 -13.52921 -13.32766 -13.24604 -12.86441 -12.47357 -12.29270 -12.13494 -11.99158 -11.91783 -11.70007 -11.48161 -11.06523 -11.00082 -10.97929 -10.87720 -10.80314 -10.56081 -10.34253 -9.52105 -9.33731 -8.89819 -8.69493 -8.31395 -8.18985 -6.26187 -4.33987 0.31297 0.97281 1.56832 1.65474 1.71054 2.37181 2.65182 2.89551 3.20186 3.27763 3.31354 3.43414 3.87800 4.27600 4.36941 4.73057 4.78319 4.86134 4.89819 4.90990 4.98840 5.03229 5.10788 5.17898 5.34311 5.46905 5.52773 5.61738 5.73162 5.89521 5.92258 6.04947 6.19101 6.72057 6.97650 7.04201 7.29939 7.38243 7.53262 7.60591 7.81038 8.24664 8.44791 8.75841 9.32509 10.83891 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.002609 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.282978 B =10727.835458 C =12530.073472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.260 4.260 4 C -0.065 4.065 5 C -0.226 4.226 6 C 0.535 3.465 7 O -0.518 6.518 8 O -0.352 6.352 9 C 0.036 3.964 10 C 0.087 3.913 11 N -0.602 5.602 12 C 0.499 3.501 13 O -0.486 6.486 14 C 0.496 3.504 15 O -0.523 6.523 16 N -0.666 5.666 17 C 0.245 3.755 18 C -0.547 4.547 19 H 0.068 0.932 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 S 0.318 5.682 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.443 0.557 37 H 0.405 0.595 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 -19.262 18.043 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.377 4.377 4 C -0.093 4.093 5 C -0.244 4.244 6 C 0.381 3.619 7 O -0.409 6.409 8 O -0.268 6.268 9 C -0.058 4.058 10 C -0.134 4.134 11 N -0.252 5.252 12 C 0.282 3.718 13 O -0.360 6.360 14 C 0.274 3.726 15 O -0.401 6.401 16 N -0.315 5.315 17 C 0.126 3.874 18 C -0.585 4.585 19 H 0.086 0.914 20 C -0.139 4.139 21 N -0.521 5.521 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.207 1.207 26 S 0.581 5.419 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.169 0.831 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.290 0.710 37 H 0.240 0.760 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.056 -18.877 16.349 25.951 hybrid contribution 0.268 0.773 0.849 1.179 sum -6.789 -18.105 17.198 25.877 Atomic orbital electron populations 1.21818 0.94506 1.01876 1.02587 1.20001 0.95997 0.89324 1.03155 1.24875 1.11641 1.02452 0.98705 1.20712 0.98600 0.90359 0.99615 1.18845 1.20123 0.96835 0.88581 1.20201 0.74043 0.85612 0.82023 1.90794 1.44712 1.23004 1.82386 1.86564 1.79567 1.44614 1.16089 1.23286 1.01377 0.90956 0.90145 1.22235 1.00760 0.94097 0.96283 1.43106 1.60277 1.13745 1.08101 1.21458 0.78019 0.90547 0.81802 1.90644 1.45213 1.41205 1.58954 1.19269 0.82079 0.86387 0.84907 1.90800 1.48661 1.40644 1.59961 1.46431 1.61598 1.19474 1.04015 1.19415 0.96122 0.78676 0.93195 1.21215 1.47127 1.00247 0.89944 0.91416 1.24948 0.94473 0.94843 0.99633 1.69978 1.42880 1.03218 1.36040 0.86295 0.77887 0.78350 0.84038 1.19474 1.20703 1.20697 1.84335 1.59189 0.96293 1.02114 0.92152 0.92293 0.92354 0.90150 0.90793 0.83071 0.88055 0.91721 0.91732 0.71008 0.75957 0.94500 0.94507 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.90 37.16 0.37 -0.56 16 2 C -0.05 -0.31 6.39 -27.88 -0.18 -0.48 16 3 C -0.26 -2.45 5.68 -36.21 -0.21 -2.66 16 4 C -0.07 -0.66 9.97 -38.98 -0.39 -1.05 16 5 C -0.23 -2.90 6.00 -104.42 -0.63 -3.52 16 6 C 0.54 7.25 7.91 34.05 0.27 7.52 16 7 O -0.52 -8.28 14.24 -19.37 -0.28 -8.55 16 8 O -0.35 -3.90 10.29 -40.99 -0.42 -4.32 16 9 C 0.04 0.30 10.57 101.05 1.07 1.36 16 10 C 0.09 1.22 6.97 -14.96 -0.10 1.12 16 11 N -0.60 -9.58 5.31 -12.08 -0.06 -9.65 16 12 C 0.50 8.55 7.84 -11.66 -0.09 8.45 16 13 O -0.49 -8.12 13.89 5.47 0.08 -8.04 16 14 C 0.50 10.02 7.88 -11.66 -0.09 9.93 16 15 O -0.52 -11.98 16.47 5.48 0.09 -11.89 16 16 N -0.67 -14.05 5.54 -61.96 -0.34 -14.39 16 17 C 0.25 6.27 5.43 -5.20 -0.03 6.25 16 18 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 19 H 0.07 1.69 7.60 -52.49 -0.40 1.30 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -25.35 13.29 55.43 0.74 -24.61 16 22 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 S 0.32 3.72 19.92 -107.50 -2.14 1.58 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.44 7.46 5.64 -40.82 -0.23 7.23 16 37 H 0.41 7.74 7.79 -40.82 -0.32 7.42 16 38 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -31.10 367.89 -6.98 -38.08 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.73 Total: 7.54 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: -0.43 Total: 13.22 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.33 Total: -48.65 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.53 Total: -32.81 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -2.14 Total: 1.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.10 -6.98 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425779204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.385 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds