Wall clock time and date at job start Sat Apr 11 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.32582 * 124.58658 * 89.99769 * 3 2 1 5 5 C 1.44607 * 113.17713 * 179.97438 * 4 3 2 6 6 C 1.46474 * 123.61313 * 179.97438 * 5 4 3 7 7 O 1.21634 * 120.00421 * 179.97438 * 6 5 4 8 8 O 1.34883 * 120.00022 * 359.97438 * 6 5 4 9 9 C 1.45192 * 117.00122 * 179.97438 * 8 6 5 10 10 C 1.37270 * 112.77898 * 0.02562 * 5 4 3 11 11 N 1.38358 * 124.66276 * 179.97438 * 10 5 4 12 12 C 1.34778 * 119.99623 * 179.97438 * 11 10 5 13 13 O 1.21379 * 120.00032 * 0.02562 * 12 11 10 14 14 C 1.49294 * 119.99811 * 179.97438 * 12 11 10 15 15 O 1.21369 * 119.99796 * 0.02562 * 14 12 11 16 16 N 1.34779 * 120.00208 * 180.02562 * 14 12 11 17 17 C 1.46496 * 119.99983 * 180.02562 * 16 14 12 18 18 C 1.50696 * 109.47007 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00400 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00145 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99709 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00014 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47345 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47167 * 120.00151 * 22 20 18 25 25 H 1.48495 * 109.47245 * 239.99970 * 22 20 18 26 26 S 1.70446 * 110.67187 * 359.76417 * 10 5 4 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00219 * 1 2 3 29 29 H 1.09000 * 109.47050 * 60.00048 * 1 2 3 30 30 H 1.09000 * 109.47050 * 119.99952 * 2 1 3 31 31 H 1.09001 * 109.46801 * 240.00064 * 2 1 3 32 32 H 1.08006 * 123.40930 * 0.02562 * 4 3 2 33 33 H 1.09004 * 109.47068 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.46986 * 299.99736 * 9 8 6 35 35 H 1.09000 * 109.47474 * 59.99668 * 9 8 6 36 36 H 0.96994 * 120.00007 * 359.97438 * 11 10 5 37 37 H 0.97002 * 119.99646 * 359.97438 * 16 14 12 38 38 H 1.09001 * 109.46989 * 299.99877 * 17 16 14 39 39 H 1.08999 * 109.47318 * 59.99808 * 17 16 14 40 40 H 0.97002 * 119.99299 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2831 2.1304 1.0915 5 6 2.7561 3.4667 0.8054 6 6 3.1010 4.4437 1.8408 7 8 3.4935 5.5510 1.5256 8 8 2.9834 4.1156 3.1438 9 6 3.3433 5.1332 4.1149 10 6 2.8463 3.7218 -0.5403 11 7 3.2698 4.9200 -1.0874 12 6 3.3227 5.0681 -2.4260 13 8 2.9983 4.1507 -3.1515 14 6 3.7791 6.3612 -3.0164 15 8 4.1030 7.2787 -2.2910 16 7 3.8315 6.5096 -4.3550 17 6 4.2800 7.7782 -4.9343 18 6 4.2470 7.6833 -6.4379 19 1 3.9239 6.7696 -6.9144 20 6 4.6284 8.7634 -7.2054 21 7 5.0204 9.8767 -6.6252 22 14 4.5868 8.6460 -9.0692 23 1 4.1101 7.2979 -9.4698 24 1 3.6650 9.6773 -9.6098 25 1 5.9516 8.8698 -9.6098 26 16 2.3702 2.3577 -1.4446 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 2.1486 1.7488 2.0929 33 1 3.2025 4.7403 5.1219 34 1 4.3874 5.4141 3.9768 35 1 2.7099 6.0091 3.9751 36 1 3.5287 5.6532 -0.5077 37 1 3.5730 5.7761 -4.9347 38 1 3.6198 8.5811 -4.6059 39 1 5.2980 7.9878 -4.6060 40 1 5.2890 10.6364 -7.1652 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425779204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:44 Heat of formation + Delta-G solvation = -154.660346 kcal Electronic energy + Delta-G solvation = -26250.620412 eV Core-core repulsion = 22156.205164 eV Total energy + Delta-G solvation = -4094.415247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37797 -41.49095 -40.04172 -38.86433 -37.56951 -36.86240 -36.09697 -34.46365 -33.99597 -30.07246 -29.57907 -28.90032 -26.84810 -25.53670 -24.58025 -23.94589 -22.33119 -21.61067 -21.33517 -19.93462 -19.37559 -18.48500 -18.24686 -17.67529 -17.62711 -17.32608 -17.22653 -16.75757 -16.49396 -16.03111 -15.87480 -15.30129 -15.04524 -14.83022 -14.72861 -14.30632 -14.14212 -14.12589 -14.02253 -13.74142 -13.32870 -13.24504 -12.99876 -12.96692 -12.77693 -12.33579 -12.25582 -12.15971 -11.88684 -11.82701 -11.67348 -11.60051 -11.50882 -10.89078 -10.83445 -10.15929 -9.61915 -9.28038 -8.33346 -6.49850 -0.81293 0.01880 0.21556 0.71407 0.75166 1.11270 1.44252 1.44432 1.58529 1.76337 1.77056 1.99633 2.31434 2.46957 3.02504 3.25340 3.56705 3.77991 3.99496 4.29238 4.31412 4.31918 4.36558 4.53520 4.65278 4.72270 4.86256 4.91841 4.93649 5.10961 5.12220 5.15296 5.16995 5.20050 5.39709 5.42337 5.48576 5.57933 5.74456 6.04967 6.44123 6.56653 6.58663 6.88435 7.22987 8.78678 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014639 B = 0.002609 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.282978 B =10727.835458 C =12530.073472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.047 4.047 3 C -0.235 4.235 4 C -0.069 4.069 5 C -0.220 4.220 6 C 0.532 3.468 7 O -0.550 6.550 8 O -0.346 6.346 9 C 0.028 3.972 10 C 0.048 3.952 11 N -0.600 5.600 12 C 0.511 3.489 13 O -0.483 6.483 14 C 0.498 3.502 15 O -0.554 6.554 16 N -0.663 5.663 17 C 0.261 3.739 18 C -0.560 4.560 19 H 0.084 0.916 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.984 3.016 23 H -0.255 1.255 24 H -0.278 1.278 25 H -0.278 1.278 26 S 0.315 5.685 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.178 0.822 33 H 0.140 0.860 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.437 0.563 37 H 0.417 0.583 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -22.418 18.447 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.352 4.352 4 C -0.096 4.096 5 C -0.239 4.239 6 C 0.379 3.621 7 O -0.443 6.443 8 O -0.262 6.262 9 C -0.065 4.065 10 C -0.171 4.171 11 N -0.250 5.250 12 C 0.293 3.707 13 O -0.358 6.358 14 C 0.277 3.723 15 O -0.433 6.433 16 N -0.313 5.313 17 C 0.140 3.860 18 C -0.597 4.597 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.807 3.193 23 H -0.179 1.179 24 H -0.203 1.203 25 H -0.203 1.203 26 S 0.579 5.421 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.195 0.805 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.283 0.717 37 H 0.254 0.746 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.142 -22.112 16.782 28.928 hybrid contribution 0.558 1.657 0.958 1.994 sum -7.584 -20.454 17.740 28.118 Atomic orbital electron populations 1.21828 0.93937 1.02912 1.02133 1.20192 0.96354 0.87346 1.04744 1.25209 1.09648 1.03306 0.97055 1.20922 0.98640 0.88964 1.01049 1.19172 1.18911 0.97833 0.88007 1.20449 0.73415 0.85234 0.83011 1.90783 1.46186 1.24381 1.82965 1.86557 1.79032 1.45313 1.15290 1.23610 1.01053 0.90773 0.91026 1.22513 1.03309 0.93993 0.97275 1.42879 1.60321 1.14572 1.07194 1.20469 0.78787 0.89013 0.82471 1.90654 1.45498 1.40537 1.59094 1.19754 0.80817 0.87400 0.84305 1.90777 1.49647 1.42284 1.60619 1.46114 1.62003 1.18461 1.04751 1.18909 0.93770 0.79802 0.93519 1.21581 1.46968 1.00995 0.90202 0.89829 1.25995 0.93734 0.94275 1.05122 1.70117 1.43896 1.04203 1.38245 0.85110 0.77939 0.78971 0.77232 1.17875 1.20332 1.20314 1.84262 1.58487 0.95742 1.03569 0.90439 0.92304 0.93316 0.87912 0.89845 0.80454 0.84223 0.92116 0.92140 0.71748 0.74581 0.97571 0.97572 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.90 71.98 0.71 -0.67 16 2 C -0.05 -0.46 6.39 29.85 0.19 -0.27 16 3 C -0.23 -3.80 5.68 24.53 0.14 -3.66 16 4 C -0.07 -1.22 9.97 22.74 0.23 -0.99 16 5 C -0.22 -5.44 6.00 -19.74 -0.12 -5.56 16 6 C 0.53 14.21 7.91 69.97 0.55 14.76 16 7 O -0.55 -18.03 14.24 19.40 0.28 -17.75 16 8 O -0.35 -7.16 10.29 -57.98 -0.60 -7.75 16 9 C 0.03 0.42 10.57 113.37 1.20 1.62 16 10 C 0.05 1.33 6.97 83.43 0.58 1.91 16 11 N -0.60 -19.62 5.31 -310.49 -1.65 -21.27 16 12 C 0.51 17.88 7.84 87.22 0.68 18.57 16 13 O -0.48 -16.09 13.89 -3.34 -0.05 -16.13 16 14 C 0.50 20.94 7.88 87.22 0.69 21.63 16 15 O -0.55 -26.77 16.47 -3.31 -0.05 -26.82 16 16 N -0.66 -28.90 5.54 -468.31 -2.59 -31.49 16 17 C 0.26 13.98 5.43 85.63 0.46 14.45 16 18 C -0.56 -30.01 9.28 25.60 0.24 -29.77 16 19 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 20 C 0.01 0.49 5.46 84.66 0.46 0.95 16 21 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 22 Si 0.98 41.87 29.54 68.60 2.03 43.90 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 26 S 0.32 6.99 19.92 -56.49 -1.13 5.87 16 27 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.44 15.43 5.64 -92.71 -0.52 14.90 16 37 H 0.42 16.07 7.79 -92.71 -0.72 15.35 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.33 367.89 2.41 -66.93 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: -0.13 Total: 25.75 kcal Atomic # 6 Polarization: 26.96 SS G_CDS: 6.02 Total: 32.98 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -3.96 Total: -106.96 kcal Atomic # 8 Polarization: -68.04 SS G_CDS: -0.42 Total: -68.46 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.13 Total: 5.87 kcal Total: -69.33 2.41 -66.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425779204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.735 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds