Wall clock time and date at job start Sat Apr 11 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81399 * 109.47004 * 2 1 4 4 O 1.42098 * 110.54236 * 291.62853 * 3 2 1 5 5 O 1.42107 * 110.54259 * 68.37036 * 3 2 1 6 6 N 1.65591 * 104.45009 * 179.97438 * 3 2 1 7 7 C 1.47062 * 136.06209 * 269.62619 * 6 3 2 8 8 C 1.53235 * 88.09047 * 207.20527 * 7 6 3 9 9 C 1.52996 * 114.33026 * 220.47335 * 8 7 6 10 10 N 1.46508 * 109.46930 * 268.75762 * 9 8 7 11 11 S 1.65600 * 119.99774 * 165.00305 * 10 9 8 12 12 O 1.42095 * 104.27361 * 181.07333 * 11 10 9 13 13 O 1.42103 * 104.27381 * 308.92436 * 11 10 9 14 14 C 1.81389 * 104.45225 * 64.99688 * 11 10 9 15 15 C 1.53005 * 109.47460 * 179.97438 * 14 11 10 16 16 C 1.50690 * 109.47347 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00720 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99749 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00331 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99750 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47331 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47194 * 119.99962 * 20 18 16 23 23 H 1.48501 * 109.46727 * 239.99843 * 20 18 16 24 24 C 1.47075 * 136.05360 * 90.00314 * 6 3 2 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00150 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99979 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00021 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00133 * 2 1 3 30 30 H 1.09006 * 113.46791 * 321.94342 * 7 6 3 31 31 H 1.09002 * 113.46597 * 92.37935 * 7 6 3 32 32 H 1.09001 * 114.19681 * 87.72656 * 8 7 6 33 33 H 1.08998 * 109.47152 * 28.75715 * 9 8 7 34 34 H 1.08997 * 109.47299 * 148.75874 * 9 8 7 35 35 H 0.96998 * 119.99696 * 345.00223 * 10 9 8 36 36 H 1.09000 * 109.47841 * 300.00084 * 14 11 10 37 37 H 1.09000 * 109.47149 * 60.00131 * 14 11 10 38 38 H 1.09006 * 109.46374 * 300.00545 * 15 14 11 39 39 H 1.09000 * 109.46790 * 59.99963 * 15 14 11 40 40 H 0.96993 * 120.00243 * 180.02562 * 19 18 16 41 41 H 1.09000 * 113.46676 * 267.61677 * 24 6 3 42 42 H 1.08994 * 113.47007 * 38.06629 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3438 -1.2369 5 8 1.8384 2.3439 1.2370 6 7 3.7842 1.5654 0.0007 7 6 4.8393 1.4795 1.0216 8 6 5.8053 2.0907 0.0011 9 6 7.2017 1.4655 0.0019 10 7 8.0678 2.2063 0.9225 11 16 9.5077 1.5513 1.4125 12 8 10.0492 2.5199 2.3000 13 8 9.1634 0.2505 1.8694 14 6 10.4990 1.4518 -0.1033 15 6 11.8700 0.8556 0.2221 16 6 12.6938 0.7736 -1.0371 17 1 12.2808 1.1123 -1.9757 18 6 13.9745 0.2650 -0.9910 19 7 14.4774 -0.1480 0.1518 20 14 14.9959 0.1640 -2.5519 21 1 14.2067 0.6892 -3.6948 22 1 16.2305 0.9731 -2.3888 23 1 15.3624 -1.2513 -2.8127 24 6 4.8395 1.4726 -1.0195 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 4.6606 2.1197 1.8855 31 1 5.0920 0.4563 1.2996 32 1 5.8212 3.1806 -0.0019 33 1 7.1343 0.4262 0.3235 34 1 7.6195 1.5083 -1.0039 35 1 7.7979 3.0804 1.2448 36 1 9.9900 0.8182 -0.8295 37 1 10.6273 2.4509 -0.5197 38 1 12.3788 1.4897 0.9482 39 1 11.7421 -0.1434 0.6388 40 1 15.3785 -0.5055 0.1842 41 1 5.0923 0.4476 -1.2906 42 1 4.6610 2.1070 -1.8876 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438900481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:42 Heat of formation + Delta-G solvation = -117.306530 kcal Electronic energy + Delta-G solvation = -25182.642534 eV Core-core repulsion = 21225.291022 eV Total energy + Delta-G solvation = -3957.351513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08101 -37.46610 -36.62601 -36.33613 -35.50399 -35.03173 -33.92005 -33.65113 -31.18959 -29.71454 -26.45030 -25.62878 -25.32644 -24.23900 -21.74569 -20.97522 -19.20438 -18.84575 -18.08955 -17.44945 -17.04756 -16.70030 -16.52493 -16.30683 -15.69744 -15.29061 -15.10762 -14.69614 -14.56851 -14.22539 -13.96623 -13.79778 -13.53590 -13.35054 -13.03164 -12.90226 -12.54673 -12.49799 -12.41979 -12.17280 -12.10010 -12.00804 -11.78240 -11.62718 -11.53043 -11.21596 -11.11945 -11.04949 -10.98364 -10.91586 -10.43255 -10.41426 -9.82894 -9.53582 -9.50106 -9.05164 -8.53335 -6.15248 -4.20817 -0.23024 0.75420 2.12459 3.07380 3.23214 3.30778 3.33772 3.41918 3.54102 3.95823 4.03300 4.19385 4.20237 4.28753 4.34877 4.46118 4.65099 4.71050 4.85806 4.94612 5.06593 5.11244 5.16071 5.20117 5.23312 5.27277 5.36540 5.39653 5.46367 5.55323 5.63850 5.78804 5.95577 6.04335 6.45751 7.03464 7.27565 7.33471 7.77949 8.14690 8.82997 9.44193 10.95740 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.002103 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.216728 B =13312.337349 C =13912.121342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.636 4.636 3 S 2.633 3.367 4 O -0.950 6.950 5 O -0.949 6.949 6 N -1.044 6.044 7 C 0.125 3.875 8 C -0.127 4.127 9 C 0.124 3.876 10 N -1.128 6.128 11 S 2.594 3.406 12 O -0.967 6.967 13 O -0.967 6.967 14 C -0.590 4.590 15 C 0.027 3.973 16 C -0.520 4.520 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.129 3.871 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.414 0.586 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.265 0.735 41 H 0.090 0.910 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.770 0.970 -2.256 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.765 4.765 3 S 2.727 3.273 4 O -0.941 6.941 5 O -0.940 6.940 6 N -0.882 5.882 7 C -0.001 4.001 8 C -0.149 4.149 9 C -0.003 4.003 10 N -0.885 5.885 11 S 2.691 3.309 12 O -0.957 6.957 13 O -0.957 6.957 14 C -0.723 4.723 15 C -0.012 4.012 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.003 3.997 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.247 0.753 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.150 1.266 -1.320 26.214 hybrid contribution 0.605 -0.489 -1.371 1.576 sum -25.546 0.777 -2.691 25.699 Atomic orbital electron populations 1.21511 0.90514 1.05159 1.03462 1.30621 1.07214 1.27082 1.11610 1.04497 0.71408 0.77188 0.74177 1.93596 1.82580 1.72536 1.45390 1.93602 1.82544 1.72521 1.45350 1.60167 1.20538 1.89380 1.18155 1.22708 0.83095 1.01815 0.92440 1.23201 0.92645 1.01873 0.97152 1.21241 0.89033 0.96232 0.93827 1.55804 1.37927 1.31972 1.62830 1.05522 0.73655 0.73964 0.77719 1.93560 1.78262 1.61460 1.62417 1.93536 1.81974 1.40688 1.79524 1.30444 1.13202 1.10224 1.18438 1.18969 0.86546 0.96503 0.99188 1.21038 0.98604 1.42569 0.93718 0.91985 1.25080 0.97857 0.95109 0.96522 1.69959 1.16457 1.41533 1.24853 0.86416 0.80117 0.77829 0.82918 1.19658 1.20815 1.20825 1.22595 0.83126 1.01655 0.92312 0.89943 0.90923 0.90941 0.85061 0.85093 0.89581 0.89060 0.86750 0.89591 0.90724 0.75285 0.86320 0.86058 0.94830 0.94817 0.92573 0.89146 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.92 37.16 0.37 -0.36 16 2 C -0.64 -3.19 6.90 37.16 0.26 -2.93 16 3 S 2.63 21.99 5.96 -107.50 -0.64 21.35 16 4 O -0.95 -10.82 18.07 -57.54 -1.04 -11.86 16 5 O -0.95 -11.14 18.07 -57.54 -1.04 -12.18 16 6 N -1.04 -7.65 4.10 -125.31 -0.51 -8.16 16 7 C 0.12 0.88 8.25 -8.65 -0.07 0.81 16 8 C -0.13 -0.84 4.13 -90.24 -0.37 -1.21 16 9 C 0.12 1.00 6.05 -4.04 -0.02 0.98 16 10 N -1.13 -11.84 5.89 -10.61 -0.06 -11.91 16 11 S 2.59 41.60 5.46 -107.50 -0.59 41.01 16 12 O -0.97 -18.82 18.08 -57.54 -1.04 -19.86 16 13 O -0.97 -18.18 17.50 -57.54 -1.01 -19.19 16 14 C -0.59 -10.31 6.01 37.16 0.22 -10.09 16 15 C 0.03 0.66 4.98 -27.88 -0.14 0.52 16 16 C -0.52 -13.92 9.11 -34.44 -0.31 -14.23 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 20 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.13 0.75 8.28 -8.50 -0.07 0.68 16 25 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.52 7.88 -51.93 -0.41 0.11 16 32 H 0.11 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.09 0.70 7.36 -51.93 -0.38 0.31 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.41 3.59 8.59 -34.47 -0.30 3.29 16 36 H 0.12 1.79 8.14 -51.92 -0.42 1.37 16 37 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 38 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.09 0.34 8.10 -51.93 -0.42 -0.08 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -39.59 380.14 -11.27 -50.86 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.54 Total: -1.92 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -0.24 Total: -24.36 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.16 Total: -45.30 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -4.13 Total: -63.09 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 63.59 SS G_CDS: -1.23 Total: 62.36 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -39.59 -11.27 -50.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438900481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.442 kcal (2) G-P(sol) polarization free energy of solvation -39.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds