Wall clock time and date at job start Sat Apr 11 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81399 * 109.47004 * 2 1 4 4 O 1.42098 * 110.54236 * 291.62853 * 3 2 1 5 5 O 1.42107 * 110.54259 * 68.37036 * 3 2 1 6 6 N 1.65591 * 104.45009 * 179.97438 * 3 2 1 7 7 C 1.47062 * 136.06209 * 269.62619 * 6 3 2 8 8 C 1.53235 * 88.09047 * 207.20527 * 7 6 3 9 9 C 1.52996 * 114.33026 * 220.47335 * 8 7 6 10 10 N 1.46508 * 109.46930 * 268.75762 * 9 8 7 11 11 S 1.65600 * 119.99774 * 165.00305 * 10 9 8 12 12 O 1.42095 * 104.27361 * 181.07333 * 11 10 9 13 13 O 1.42103 * 104.27381 * 308.92436 * 11 10 9 14 14 C 1.81389 * 104.45225 * 64.99688 * 11 10 9 15 15 C 1.53005 * 109.47460 * 179.97438 * 14 11 10 16 16 C 1.50690 * 109.47347 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00720 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99749 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00331 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99750 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47331 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47194 * 119.99962 * 20 18 16 23 23 H 1.48501 * 109.46727 * 239.99843 * 20 18 16 24 24 C 1.47075 * 136.05360 * 90.00314 * 6 3 2 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00150 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99979 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00021 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00133 * 2 1 3 30 30 H 1.09006 * 113.46791 * 321.94342 * 7 6 3 31 31 H 1.09002 * 113.46597 * 92.37935 * 7 6 3 32 32 H 1.09001 * 114.19681 * 87.72656 * 8 7 6 33 33 H 1.08998 * 109.47152 * 28.75715 * 9 8 7 34 34 H 1.08997 * 109.47299 * 148.75874 * 9 8 7 35 35 H 0.96998 * 119.99696 * 345.00223 * 10 9 8 36 36 H 1.09000 * 109.47841 * 300.00084 * 14 11 10 37 37 H 1.09000 * 109.47149 * 60.00131 * 14 11 10 38 38 H 1.09006 * 109.46374 * 300.00545 * 15 14 11 39 39 H 1.09000 * 109.46790 * 59.99963 * 15 14 11 40 40 H 0.96993 * 120.00243 * 180.02562 * 19 18 16 41 41 H 1.09000 * 113.46676 * 267.61677 * 24 6 3 42 42 H 1.08994 * 113.47007 * 38.06629 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3438 -1.2369 5 8 1.8384 2.3439 1.2370 6 7 3.7842 1.5654 0.0007 7 6 4.8393 1.4795 1.0216 8 6 5.8053 2.0907 0.0011 9 6 7.2017 1.4655 0.0019 10 7 8.0678 2.2063 0.9225 11 16 9.5077 1.5513 1.4125 12 8 10.0492 2.5199 2.3000 13 8 9.1634 0.2505 1.8694 14 6 10.4990 1.4518 -0.1033 15 6 11.8700 0.8556 0.2221 16 6 12.6938 0.7736 -1.0371 17 1 12.2808 1.1123 -1.9757 18 6 13.9745 0.2650 -0.9910 19 7 14.4774 -0.1480 0.1518 20 14 14.9959 0.1640 -2.5519 21 1 14.2067 0.6892 -3.6948 22 1 16.2305 0.9731 -2.3888 23 1 15.3624 -1.2513 -2.8127 24 6 4.8395 1.4726 -1.0195 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 4.6606 2.1197 1.8855 31 1 5.0920 0.4563 1.2996 32 1 5.8212 3.1806 -0.0019 33 1 7.1343 0.4262 0.3235 34 1 7.6195 1.5083 -1.0039 35 1 7.7979 3.0804 1.2448 36 1 9.9900 0.8182 -0.8295 37 1 10.6273 2.4509 -0.5197 38 1 12.3788 1.4897 0.9482 39 1 11.7421 -0.1434 0.6388 40 1 15.3785 -0.5055 0.1842 41 1 5.0923 0.4476 -1.2906 42 1 4.6610 2.1070 -1.8876 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438900481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:41 Heat of formation + Delta-G solvation = -151.280207 kcal Electronic energy + Delta-G solvation = -25184.115744 eV Core-core repulsion = 21225.291022 eV Total energy + Delta-G solvation = -3958.824722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60293 -38.21412 -38.05433 -37.08464 -36.91737 -35.88361 -35.83533 -34.04779 -33.05814 -30.37090 -27.53368 -26.91927 -25.95150 -24.68750 -23.53729 -21.59732 -20.18205 -19.70850 -18.97838 -18.66437 -18.14062 -17.66176 -17.32432 -17.21717 -16.95085 -16.48714 -16.34473 -15.86241 -15.37061 -15.01529 -14.84713 -14.66064 -14.43983 -14.23399 -14.08287 -13.65739 -13.45313 -13.40971 -13.27696 -13.20997 -13.15580 -13.10174 -13.02784 -12.91784 -12.71968 -12.61031 -12.44852 -12.18819 -12.06069 -11.91702 -11.71632 -11.58270 -11.48118 -11.06296 -10.62050 -10.20158 -9.99726 -8.22679 -6.35854 -0.82632 -0.56343 1.43601 1.43979 1.55919 1.57015 1.97435 2.40748 2.84874 2.92453 2.95825 3.11161 3.34677 3.49548 3.59772 3.79324 3.82293 3.91407 4.09958 4.24865 4.31759 4.34019 4.54889 4.60537 4.68784 4.70946 4.75634 4.81348 4.82414 4.87524 4.92865 5.04563 5.05869 5.34896 5.36007 5.39641 5.53413 5.73317 6.11164 6.24883 6.78996 7.34265 8.89571 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.002103 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.216728 B =13312.337349 C =13912.121342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.613 4.613 3 S 2.633 3.367 4 O -0.989 6.989 5 O -0.994 6.994 6 N -1.051 6.051 7 C 0.116 3.884 8 C -0.122 4.122 9 C 0.113 3.887 10 N -1.108 6.108 11 S 2.624 3.376 12 O -1.005 7.005 13 O -0.995 6.995 14 C -0.590 4.590 15 C 0.017 3.983 16 C -0.534 4.534 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.254 1.254 22 H -0.282 1.282 23 H -0.279 1.279 24 C 0.129 3.871 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.425 0.575 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.003 0.997 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.118 0.882 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.968 0.244 -4.416 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.746 4.746 3 S 2.733 3.267 4 O -0.979 6.979 5 O -0.985 6.985 6 N -0.889 5.889 7 C -0.009 4.009 8 C -0.144 4.144 9 C -0.014 4.014 10 N -0.871 5.871 11 S 2.720 3.280 12 O -0.995 6.995 13 O -0.985 6.985 14 C -0.721 4.721 15 C -0.021 4.021 16 C -0.573 4.573 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.575 5.575 20 Si 0.796 3.204 21 H -0.178 1.178 22 H -0.208 1.208 23 H -0.205 1.205 24 C 0.003 3.997 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.262 0.738 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.022 0.978 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -27.339 0.593 -3.494 27.568 hybrid contribution 0.864 -0.298 -0.677 1.137 sum -26.475 0.295 -4.171 26.804 Atomic orbital electron populations 1.21698 0.90376 1.06449 1.03583 1.30413 1.07239 1.23181 1.13723 1.04187 0.71472 0.78536 0.72513 1.93541 1.83252 1.74710 1.46440 1.93542 1.83325 1.74844 1.46748 1.59960 1.20282 1.89828 1.18859 1.22884 0.83102 1.02675 0.92278 1.23153 0.91696 1.02083 0.97512 1.21600 0.89282 0.96170 0.94305 1.55272 1.35888 1.32628 1.63268 1.04309 0.74099 0.72913 0.76641 1.93504 1.79811 1.62398 1.63798 1.93499 1.82618 1.42448 1.79924 1.30348 1.09891 1.11425 1.20476 1.18833 0.90289 0.95127 0.97889 1.21578 0.99078 1.41692 0.94991 0.90438 1.26117 0.99549 0.94853 0.99951 1.70106 1.16987 1.42959 1.27439 0.85286 0.78216 0.77833 0.79023 1.17782 1.20763 1.20496 1.22802 0.81855 1.03254 0.91749 0.87951 0.91113 0.90845 0.83235 0.82767 0.90534 0.87504 0.86434 0.89238 0.88238 0.73826 0.83412 0.84037 0.97837 0.97338 0.92531 0.86448 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.92 71.98 0.71 -0.55 16 2 C -0.61 -4.55 6.90 71.98 0.50 -4.05 16 3 S 2.63 41.97 5.96 -56.49 -0.34 41.63 16 4 O -0.99 -22.26 18.07 -127.65 -2.31 -24.57 16 5 O -0.99 -23.64 18.07 -127.65 -2.31 -25.95 16 6 N -1.05 -13.58 4.10 -550.38 -2.26 -15.84 16 7 C 0.12 1.42 8.25 83.09 0.69 2.10 16 8 C -0.12 -1.30 4.13 -10.55 -0.04 -1.34 16 9 C 0.11 1.46 6.05 86.38 0.52 1.98 16 10 N -1.11 -20.79 5.89 -187.48 -1.10 -21.90 16 11 S 2.62 81.98 5.46 -56.49 -0.31 81.67 16 12 O -1.00 -39.27 18.08 -127.65 -2.31 -41.58 16 13 O -1.00 -36.84 17.50 -127.65 -2.23 -39.07 16 14 C -0.59 -19.79 6.01 71.98 0.43 -19.35 16 15 C 0.02 0.87 4.98 29.85 0.15 1.02 16 16 C -0.53 -28.46 9.11 25.60 0.23 -28.22 16 17 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 18 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 19 N -0.94 -55.86 13.29 21.45 0.28 -55.58 16 20 Si 0.97 42.21 29.54 68.60 2.03 44.23 16 21 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 C 0.13 1.14 8.28 83.18 0.69 1.83 16 25 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.15 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.11 0.96 7.88 -2.39 -0.02 0.94 16 32 H 0.12 1.18 8.11 -2.39 -0.02 1.16 16 33 H 0.09 1.16 7.36 -2.39 -0.02 1.14 16 34 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.43 6.47 8.59 -96.74 -0.83 5.64 16 36 H 0.15 4.03 8.14 -2.39 -0.02 4.01 16 37 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 38 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.12 0.41 8.10 -2.39 -0.02 0.39 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -88.07 380.14 -6.32 -94.39 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 0.19 Total: 9.05 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 4.34 Total: -46.50 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -3.08 Total: -93.31 kcal Atomic # 8 Polarization: -122.01 SS G_CDS: -9.15 Total: -131.17 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 123.95 SS G_CDS: -0.65 Total: 123.31 kcal Total: -88.07 -6.32 -94.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438900481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.893 kcal (2) G-P(sol) polarization free energy of solvation -88.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds