Wall clock time and date at job start Sat Apr 11 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47128 * 2 1 4 4 H 1.08995 * 109.47711 * 305.00541 * 3 2 1 5 5 C 1.50697 * 109.47323 * 184.99669 * 3 2 1 6 6 H 1.08002 * 120.00599 * 240.00782 * 5 3 2 7 7 C 1.37880 * 119.99675 * 60.00315 * 5 3 2 8 8 N 1.31517 * 120.00210 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00019 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 N 1.46506 * 109.46817 * 65.00459 * 3 2 1 14 14 C 1.34781 * 119.99571 * 275.00130 * 13 3 2 15 15 O 1.21360 * 120.00211 * 359.97438 * 14 13 3 16 16 C 1.49295 * 119.99675 * 180.02562 * 14 13 3 17 17 O 1.21382 * 120.00215 * 359.97438 * 16 14 13 18 18 N 1.34778 * 120.00059 * 179.97438 * 16 14 13 19 19 C 1.38354 * 120.00375 * 179.97438 * 18 16 14 20 20 S 1.70444 * 124.66080 * 0.02562 * 19 18 16 21 21 C 1.75461 * 92.54275 * 180.02562 * 20 19 18 22 22 C 1.32587 * 110.82918 * 0.02562 * 21 20 19 23 23 C 1.37263 * 124.66660 * 179.72423 * 19 18 16 24 24 C 1.46473 * 123.60928 * 359.95783 * 23 19 18 25 25 O 1.21639 * 120.00045 * 0.02562 * 24 23 19 26 26 O 1.34872 * 120.00206 * 180.02562 * 24 23 19 27 27 C 1.45207 * 117.00121 * 179.97438 * 26 24 23 28 28 H 1.08997 * 109.46973 * 60.00097 * 1 2 3 29 29 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47013 * 299.99671 * 1 2 3 31 31 H 1.09004 * 109.47323 * 240.00362 * 2 1 3 32 32 H 1.09004 * 109.47318 * 120.00449 * 2 1 3 33 33 H 0.96998 * 119.99640 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00309 * 94.99751 * 13 3 2 35 35 H 0.97001 * 119.99737 * 359.97438 * 18 16 14 36 36 H 1.07997 * 124.58565 * 179.97438 * 21 20 19 37 37 H 1.08002 * 123.41206 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47201 * 179.97438 * 27 26 24 39 39 H 1.08999 * 109.47250 * 300.00067 * 27 26 24 40 40 H 1.08996 * 109.46752 * 60.00452 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1237 6 1 4.1473 1.8888 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 5.4540 0.8805 -1.3363 9 14 3.0964 0.1102 -2.5707 10 1 2.8745 -1.3259 -2.2646 11 1 1.7881 0.8095 -2.6394 12 1 3.7942 0.2361 -3.8755 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6642 1.3671 15 8 -0.3398 2.6325 0.4337 16 6 0.0404 3.3321 2.6427 17 8 0.8157 3.3642 3.5761 18 7 -1.1767 3.8994 2.7577 19 6 -1.5428 4.5179 3.9400 20 16 -0.5512 4.6323 5.3216 21 6 -1.7751 5.5082 6.2235 22 6 -2.8642 5.6873 5.4888 23 6 -2.7521 5.1289 4.1596 24 6 -3.8170 5.2032 3.1566 25 8 -3.6539 4.7060 2.0585 26 8 -4.9783 5.8227 3.4505 27 6 -5.9886 5.8586 2.4082 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.8770 0.4827 -2.1133 34 1 2.2720 2.1230 1.9979 35 1 -1.7961 3.8741 2.0117 36 1 -1.6576 5.8538 7.2399 37 1 -3.7436 6.2032 5.8450 38 1 -6.8704 6.3841 2.7748 39 1 -5.5923 6.3780 1.5357 40 1 -6.2618 4.8402 2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439558863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:44 Heat of formation + Delta-G solvation = -134.570563 kcal Electronic energy + Delta-G solvation = -27087.103531 eV Core-core repulsion = 22993.559443 eV Total energy + Delta-G solvation = -4093.544089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.39296 -41.48830 -40.27720 -38.63889 -37.44603 -37.39628 -35.95622 -34.45949 -33.33965 -30.56794 -29.69795 -28.99589 -26.84130 -25.37875 -24.42605 -22.88469 -22.63130 -21.85028 -21.34973 -19.84053 -19.64299 -18.63811 -18.24245 -17.73787 -17.71926 -17.49332 -17.26400 -16.94925 -16.31794 -15.99813 -15.88712 -15.30527 -15.20057 -15.01921 -14.66507 -14.38860 -14.20019 -13.94611 -13.81896 -13.71372 -13.41904 -13.27125 -13.02451 -12.93926 -12.80092 -12.45222 -12.19412 -11.98581 -11.89328 -11.84587 -11.62778 -11.38310 -11.32767 -10.91196 -10.79106 -10.08357 -9.59563 -9.39040 -8.39988 -6.47836 -0.76867 0.07393 0.26353 0.77053 0.82491 1.17572 1.28036 1.36371 1.45160 1.79062 1.81875 2.03836 2.24547 2.42547 2.95057 3.24933 3.70031 3.82760 4.14850 4.16737 4.25718 4.31412 4.33192 4.35870 4.55670 4.70476 4.72123 4.81718 4.94228 5.02613 5.06469 5.11277 5.14664 5.21324 5.29477 5.40646 5.45032 5.54068 5.95992 6.16485 6.45836 6.57078 6.60550 6.85352 7.19279 8.75060 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.002954 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.388771 B = 9475.522708 C =10655.539593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 C 0.248 3.752 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.936 3.064 10 H -0.257 1.257 11 H -0.254 1.254 12 H -0.293 1.293 13 N -0.659 5.659 14 C 0.505 3.495 15 O -0.536 6.536 16 C 0.506 3.494 17 O -0.485 6.485 18 N -0.600 5.600 19 C 0.050 3.950 20 S 0.310 5.690 21 C -0.266 4.266 22 C -0.069 4.069 23 C -0.228 4.228 24 C 0.532 3.468 25 O -0.549 6.549 26 O -0.347 6.347 27 C 0.029 3.971 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.272 0.728 34 H 0.415 0.585 35 H 0.438 0.562 36 H 0.209 0.791 37 H 0.181 0.819 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.084 9.513 15.952 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 C 0.144 3.856 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.569 5.569 9 Si 0.762 3.238 10 H -0.182 1.182 11 H -0.179 1.179 12 H -0.220 1.220 13 N -0.309 5.309 14 C 0.284 3.716 15 O -0.415 6.415 16 C 0.288 3.712 17 O -0.360 6.360 18 N -0.249 5.249 19 C -0.170 4.170 20 S 0.573 5.427 21 C -0.401 4.401 22 C -0.096 4.096 23 C -0.247 4.247 24 C 0.379 3.621 25 O -0.443 6.443 26 O -0.263 6.263 27 C -0.064 4.064 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.252 0.748 35 H 0.283 0.717 36 H 0.225 0.775 37 H 0.198 0.802 38 H 0.156 0.844 39 H 0.079 0.921 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.443 8.805 15.780 26.543 hybrid contribution -1.436 0.035 -1.715 2.237 sum -20.879 8.840 14.064 26.681 Atomic orbital electron populations 1.21814 0.95052 1.01184 1.01572 1.22247 0.95945 0.97847 1.01763 1.19087 0.93923 0.90087 0.82497 0.94434 1.21191 0.89871 1.39351 1.07355 0.92522 1.25549 0.95797 0.95655 0.99801 1.69972 1.10392 1.45691 1.30863 0.86047 0.79456 0.80125 0.78160 1.18242 1.17857 1.22039 1.45898 1.14076 1.52825 1.18108 1.19533 0.83805 0.80921 0.87351 1.90786 1.51463 1.59304 1.39912 1.20628 0.81791 0.79560 0.89247 1.90676 1.49953 1.56212 1.39149 1.42874 1.16607 1.50485 1.14971 1.22572 0.99847 0.99969 0.94563 1.84400 1.12118 1.49931 0.96293 1.26308 0.98307 1.08656 1.06823 1.21075 1.00589 0.99116 0.88818 1.19275 0.92759 1.14647 0.98016 1.20454 0.82029 0.74225 0.85419 1.90773 1.81162 1.47018 1.25317 1.86558 1.24513 1.70113 1.45110 1.23600 0.89465 1.03378 0.89989 0.93652 0.91721 0.93336 0.92959 0.90963 0.91899 0.74841 0.71667 0.77458 0.80217 0.84369 0.92135 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.51 71.98 0.61 -4.50 16 2 C -0.14 -5.80 5.11 30.60 0.16 -5.64 16 3 C 0.25 11.36 1.83 44.24 0.08 11.44 16 4 H 0.04 1.88 6.63 -2.39 -0.02 1.86 16 5 C -0.54 -28.97 9.31 25.60 0.24 -28.73 16 6 H 0.06 3.28 7.98 -2.91 -0.02 3.25 16 7 C 0.03 1.79 5.45 84.65 0.46 2.25 16 8 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 9 Si 0.94 43.28 24.41 68.60 1.67 44.95 16 10 H -0.26 -11.12 6.83 99.48 0.68 -10.44 16 11 H -0.25 -11.47 6.53 99.48 0.65 -10.82 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 N -0.66 -26.13 5.01 -447.59 -2.24 -28.38 16 14 C 0.50 18.87 6.45 87.22 0.56 19.43 16 15 O -0.54 -22.09 13.61 -3.28 -0.04 -22.14 16 16 C 0.51 16.37 7.84 87.22 0.68 17.06 16 17 O -0.49 -15.44 13.89 -3.35 -0.05 -15.48 16 18 N -0.60 -18.01 5.31 -310.50 -1.65 -19.66 16 19 C 0.05 1.27 6.97 83.43 0.58 1.86 16 20 S 0.31 6.25 19.95 -56.49 -1.13 5.12 16 21 C -0.27 -3.48 11.09 66.66 0.74 -2.74 16 22 C -0.07 -1.06 10.13 22.74 0.23 -0.83 16 23 C -0.23 -5.19 6.00 -19.74 -0.12 -5.31 16 24 C 0.53 13.24 7.91 69.97 0.55 13.79 16 25 O -0.55 -16.79 14.24 19.38 0.28 -16.52 16 26 O -0.35 -6.68 10.29 -57.85 -0.60 -7.28 16 27 C 0.03 0.39 10.57 113.37 1.20 1.59 16 28 H 0.04 1.75 7.85 -2.39 -0.02 1.73 16 29 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.76 5.64 -2.39 -0.01 1.75 16 31 H 0.05 2.25 3.22 -2.38 -0.01 2.24 16 32 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 33 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.41 15.45 8.01 -92.71 -0.74 14.70 16 35 H 0.44 14.07 5.64 -92.71 -0.52 13.54 16 36 H 0.21 1.19 8.06 -2.91 -0.02 1.16 16 37 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -67.25 348.43 2.30 -64.95 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.22 Total: 29.64 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 5.98 Total: 19.68 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.59 Total: -102.93 kcal Atomic # 8 Polarization: -61.01 SS G_CDS: -0.41 Total: -61.42 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.67 Total: 44.95 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.13 Total: 5.12 kcal Total: -67.25 2.30 -64.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439558863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.624 kcal (2) G-P(sol) polarization free energy of solvation -67.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds