Wall clock time and date at job start Sat Apr 11 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 113.99921 * 2 1 4 4 C 1.53005 * 109.47144 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47521 * 65.00018 * 4 3 2 6 6 C 1.37102 * 119.99763 * 264.47242 * 5 4 3 7 7 H 1.08002 * 119.99827 * 138.26330 * 6 5 4 8 8 C 1.38946 * 120.00061 * 318.26515 * 6 5 4 9 9 N 1.31412 * 119.99974 * 341.88847 * 8 6 5 10 10 Si 1.86797 * 120.00109 * 161.88768 * 8 6 5 11 11 H 1.48499 * 109.47293 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47345 * 119.99933 * 10 8 6 13 13 H 1.48501 * 109.47219 * 240.00095 * 10 8 6 14 14 C 1.34777 * 120.00063 * 84.46909 * 5 4 3 15 15 O 1.21288 * 120.00272 * 0.02562 * 14 5 4 16 16 C 1.50703 * 119.99765 * 180.02562 * 14 5 4 17 17 S 1.81403 * 109.47114 * 179.97438 * 16 14 5 18 18 C 1.76192 * 102.99978 * 180.02562 * 17 16 14 19 19 C 1.38980 * 120.07709 * 180.02562 * 18 17 16 20 20 C 1.38086 * 119.91751 * 180.02562 * 19 18 17 21 21 C 1.38307 * 120.07796 * 0.02562 * 20 19 18 22 22 N 1.48009 * 119.91441 * 179.97438 * 21 20 19 23 23 O 1.21795 * 120.00334 * 0.02562 * 22 21 20 24 24 O 1.21800 * 119.99660 * 179.72129 * 22 21 20 25 25 C 1.38294 * 120.16170 * 0.23580 * 21 20 19 26 26 C 1.38081 * 120.08562 * 359.48660 * 25 21 20 27 27 H 1.08996 * 109.47241 * 60.00116 * 1 2 3 28 28 H 1.09003 * 109.47121 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46842 * 299.99513 * 1 2 3 30 30 H 1.09000 * 109.47475 * 59.99993 * 3 2 1 31 31 H 1.09010 * 109.47245 * 299.99979 * 3 2 1 32 32 H 1.09004 * 109.46910 * 304.99522 * 4 3 2 33 33 H 1.09004 * 109.46943 * 185.00208 * 4 3 2 34 34 H 0.97003 * 120.00444 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46968 * 60.00283 * 16 14 5 36 36 H 1.08997 * 109.47130 * 300.00224 * 16 14 5 37 37 H 1.07991 * 120.04291 * 359.97438 * 19 18 17 38 38 H 1.07992 * 119.95941 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.96104 * 179.71964 * 25 21 20 40 40 H 1.07997 * 120.04578 * 180.23671 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5645 -1.2527 6 6 4.2062 -0.7861 -1.3047 7 1 3.8777 -1.3573 -2.1604 8 6 4.8623 -1.4198 -0.2566 9 7 5.5681 -0.7148 0.5989 10 14 4.7410 -3.2738 -0.0634 11 1 3.8935 -3.8301 -1.1485 12 1 6.0990 -3.8696 -0.1419 13 1 4.1346 -3.5957 1.2534 14 6 4.1542 1.3214 -2.3534 15 8 3.9508 2.5163 -2.3073 16 6 4.6066 0.6833 -3.6415 17 16 4.7525 1.9544 -4.9275 18 6 5.2815 1.0356 -6.3347 19 6 5.5070 1.6822 -7.5441 20 6 5.9210 0.9588 -8.6451 21 6 6.1107 -0.4076 -8.5454 22 7 6.5539 -1.1795 -9.7279 23 8 6.7516 -0.6114 -10.7869 24 8 6.7263 -2.3821 -9.6404 25 6 5.8820 -1.0551 -7.3450 26 6 5.4734 -0.3375 -6.2383 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8901 32 1 3.8514 0.5682 0.8410 33 1 3.9785 2.1766 0.0890 34 1 6.0265 -1.1572 1.3304 35 1 3.8774 -0.0650 -3.9519 36 1 5.5749 0.2062 -3.4901 37 1 5.3579 2.7488 -7.6230 38 1 6.0960 1.4604 -9.5853 39 1 6.0268 -2.1229 -7.2719 40 1 5.2987 -0.8432 -5.3002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180619.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:55 Heat of formation + Delta-G solvation = -61.773505 kcal Electronic energy + Delta-G solvation = -26422.795570 eV Core-core repulsion = 22332.408198 eV Total energy + Delta-G solvation = -4090.387371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.22176 -40.60788 -40.26947 -38.58087 -37.65970 -36.67299 -33.60455 -33.25296 -32.67966 -31.88295 -29.77116 -27.71515 -27.29149 -26.53007 -24.31558 -23.68550 -23.52820 -21.17233 -20.41226 -19.74929 -19.42777 -18.59277 -18.38012 -18.05539 -17.28668 -17.05716 -16.55423 -16.37320 -16.22639 -16.08769 -15.77474 -15.63539 -15.38033 -14.87678 -14.57540 -14.46239 -13.86892 -13.66445 -13.46809 -13.26371 -12.93238 -12.89619 -12.75264 -12.62603 -12.55931 -12.52615 -12.28733 -12.27766 -12.06409 -11.83355 -11.40062 -11.34824 -11.09618 -10.62776 -10.48266 -10.48103 -9.50266 -8.72059 -8.32485 -6.11046 -1.29831 -0.07302 0.09648 0.19917 0.43221 1.18395 1.40626 1.50815 1.60005 1.86975 2.14936 2.30774 2.81362 2.97639 3.12303 3.34082 3.48384 3.79758 3.84727 4.00524 4.08060 4.20049 4.24776 4.36298 4.46938 4.51032 4.51493 4.58248 4.59633 4.63659 4.69975 4.76131 4.84636 4.87318 5.10767 5.28141 5.40113 5.46305 5.94970 6.34238 6.37656 6.51671 7.09562 7.45006 7.89315 8.71907 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.002931 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.076651 B = 9549.745574 C =10700.505287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.063 3.937 4 C 0.120 3.880 5 N -0.428 5.428 6 C -0.342 4.342 7 H 0.096 0.904 8 C 0.017 3.983 9 N -0.890 5.890 10 Si 0.974 3.026 11 H -0.257 1.257 12 H -0.281 1.281 13 H -0.284 1.284 14 C 0.473 3.527 15 O -0.619 6.619 16 C -0.117 4.117 17 S -0.018 6.018 18 C -0.050 4.050 19 C -0.100 4.100 20 C -0.025 4.025 21 C -0.078 4.078 22 N 0.037 4.963 23 O -0.173 6.173 24 O -0.194 6.194 25 C -0.027 4.027 26 C -0.143 4.143 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.271 0.729 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.174 0.826 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 1.087 -9.452 10.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.015 4.015 4 C -0.004 4.004 5 N -0.145 5.145 6 C -0.470 4.470 7 H 0.113 0.887 8 C -0.187 4.187 9 N -0.527 5.527 10 Si 0.799 3.201 11 H -0.181 1.181 12 H -0.207 1.207 13 H -0.210 1.210 14 C 0.261 3.739 15 O -0.508 6.508 16 C -0.267 4.267 17 S 0.232 5.768 18 C -0.166 4.166 19 C -0.125 4.125 20 C -0.046 4.046 21 C -0.166 4.166 22 N 0.550 4.450 23 O -0.389 6.389 24 O -0.403 6.403 25 C -0.049 4.049 26 C -0.168 4.168 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.191 0.809 38 H 0.194 0.806 39 H 0.182 0.818 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.973 3.029 -8.340 9.722 hybrid contribution 0.273 -2.282 0.192 2.306 sum -3.700 0.747 -8.148 8.980 Atomic orbital electron populations 1.22889 0.80583 1.03391 1.00268 1.88049 1.20470 1.27722 1.95333 1.22822 0.94272 0.84703 0.99700 1.21345 0.91471 0.97817 0.89762 1.43381 1.55901 1.07590 1.07649 1.19560 1.37081 0.82108 1.08253 0.88653 1.26046 0.93009 1.03494 0.96162 1.70009 1.28003 1.38379 1.16317 0.85167 0.77870 0.78494 0.78594 1.18057 1.20689 1.21044 1.20008 0.81368 0.86052 0.86468 1.90556 1.58427 1.15784 1.85992 1.23639 1.07636 1.00787 0.94661 1.86271 1.79447 1.11916 0.99150 1.22878 0.97127 0.97315 0.99242 1.20995 1.00618 1.01948 0.88964 1.21158 0.92363 0.89981 1.01115 1.21214 1.15699 0.93248 0.86391 1.43829 0.97441 1.01151 1.02604 1.94493 1.54887 1.72123 1.17360 1.94530 1.56669 0.97777 1.91371 1.21047 0.92280 1.02373 0.89178 1.21442 1.02934 0.92577 0.99894 0.94182 0.88744 0.93077 0.91533 0.94703 0.89312 0.92116 0.91895 0.85892 0.86116 0.80863 0.80562 0.81820 0.82703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -15.22 10.44 -148.98 -1.56 -16.78 16 3 C 0.06 2.38 6.24 71.98 0.45 2.83 16 4 C 0.12 5.37 5.26 86.38 0.45 5.82 16 5 N -0.43 -19.63 2.45 -635.53 -1.56 -21.19 16 6 C -0.34 -15.63 8.29 84.04 0.70 -14.94 16 7 H 0.10 4.07 7.21 -2.91 -0.02 4.05 16 8 C 0.02 0.79 4.95 84.93 0.42 1.21 16 9 N -0.89 -44.46 11.66 21.66 0.25 -44.21 16 10 Si 0.97 37.48 29.59 68.60 2.03 39.51 16 11 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 12 H -0.28 -10.69 7.11 99.48 0.71 -9.99 16 13 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 14 C 0.47 20.58 7.61 87.66 0.67 21.25 16 15 O -0.62 -29.54 15.54 -3.06 -0.05 -29.59 16 16 C -0.12 -3.92 3.55 71.24 0.25 -3.66 16 17 S -0.02 -0.51 21.06 -56.49 -1.19 -1.70 16 18 C -0.05 -1.14 6.11 22.63 0.14 -1.00 16 19 C -0.10 -1.82 9.79 22.41 0.22 -1.60 16 20 C -0.02 -0.44 9.55 22.25 0.21 -0.23 16 21 C -0.08 -1.74 6.85 36.41 0.25 -1.49 16 22 N 0.04 0.96 4.45 -46.40 -0.21 0.76 16 23 O -0.17 -4.63 18.44 18.89 0.35 -4.28 16 24 O -0.19 -5.53 18.44 18.89 0.35 -5.18 16 25 C -0.03 -0.58 9.54 22.25 0.21 -0.36 16 26 C -0.14 -3.12 9.36 22.41 0.21 -2.91 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.03 1.36 8.14 -2.38 -0.02 1.35 16 32 H 0.09 4.32 5.81 -2.38 -0.01 4.31 16 33 H 0.06 2.78 7.59 -2.38 -0.02 2.76 16 34 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 35 H 0.12 3.69 7.31 -2.39 -0.02 3.67 16 36 H 0.12 3.95 7.71 -2.39 -0.02 3.93 16 37 H 0.17 2.33 8.06 -2.92 -0.02 2.31 16 38 H 0.18 2.37 7.60 -2.91 -0.02 2.35 16 39 H 0.16 3.06 7.60 -2.91 -0.02 3.04 16 40 H 0.16 3.23 5.88 -2.91 -0.02 3.22 16 Total: -1.00 -60.28 365.32 4.93 -55.35 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 1.08 Total: 20.48 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.43 Total: 6.84 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -1.51 Total: -64.64 kcal Atomic # 8 Polarization: -54.92 SS G_CDS: -0.91 Total: -55.83 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -1.19 Total: -1.70 kcal Total: -60.28 4.93 -55.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180619.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.428 kcal (2) G-P(sol) polarization free energy of solvation -60.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds