Wall clock time and date at job start Sat Apr 11 2020 05:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99967 * 2 1 4 4 N 1.46498 * 109.47250 * 124.99977 * 3 2 1 5 5 C 1.46498 * 119.99853 * 274.99780 * 4 3 2 6 6 C 1.50700 * 109.47558 * 275.00019 * 5 4 3 7 7 H 1.08004 * 119.99435 * 0.02562 * 6 5 4 8 8 C 1.37869 * 120.00220 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00481 * 0.02562 * 8 6 5 10 10 Si 1.86813 * 119.99794 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47243 * 60.00099 * 10 8 6 12 12 H 1.48495 * 109.46943 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46867 * 299.99725 * 10 8 6 14 14 S 1.65595 * 120.00200 * 94.99858 * 4 3 2 15 15 O 1.42101 * 106.40521 * 336.46215 * 14 4 3 16 16 O 1.42098 * 106.40244 * 203.53819 * 14 4 3 17 17 C 1.76201 * 107.22002 * 90.00152 * 14 4 3 18 18 C 1.38624 * 120.32449 * 89.99736 * 17 14 4 19 19 C 1.38587 * 118.48951 * 180.02562 * 18 17 14 20 20 C 1.39345 * 119.06116 * 0.02562 * 19 18 17 21 21 C 1.48065 * 119.72995 * 179.97438 * 20 19 18 22 22 O 1.21433 * 120.00051 * 359.97438 * 21 20 19 23 23 O 1.34682 * 120.00131 * 179.71944 * 21 20 19 24 24 C 1.45202 * 116.99919 * 180.26979 * 23 21 20 25 25 N 1.32751 * 120.54170 * 0.25330 * 20 19 18 26 26 C 1.31498 * 121.64466 * 359.47247 * 25 20 19 27 27 H 1.08000 * 120.00038 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.99639 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00038 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47090 * 4.99692 * 3 2 1 31 31 H 1.08997 * 109.46841 * 245.00000 * 3 2 1 32 32 H 1.09003 * 109.47389 * 35.00396 * 5 4 3 33 33 H 1.08995 * 109.47376 * 154.99986 * 5 4 3 34 34 H 0.96998 * 120.00300 * 180.02562 * 9 8 6 35 35 H 1.07996 * 120.75402 * 0.02562 * 18 17 14 36 36 H 1.08007 * 120.46915 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.46882 * 179.97438 * 24 23 21 38 38 H 1.08998 * 109.47630 * 300.00518 * 24 23 21 39 39 H 1.09004 * 109.46770 * 60.00922 * 24 23 21 40 40 H 1.08003 * 119.55346 * 180.26771 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5284 1.7622 2.4522 6 6 2.5991 3.2647 2.5449 7 1 2.9546 3.8414 1.7038 8 6 2.2088 3.9030 3.7029 9 7 1.7754 3.2008 4.7270 10 14 2.2957 5.7656 3.8175 11 1 1.4337 6.3669 2.7685 12 1 1.8242 6.2017 5.1564 13 1 3.6991 6.2088 3.6190 14 16 4.5712 0.8760 0.9174 15 8 4.5924 0.0263 -0.2214 16 8 5.0502 0.4765 2.1941 17 6 5.4768 2.3216 0.4762 18 6 6.0557 3.1114 1.4574 19 6 6.7591 4.2402 1.0678 20 6 6.8589 4.5406 -0.2892 21 6 7.6063 5.7433 -0.7219 22 8 8.1289 6.4634 0.1045 23 8 7.7110 6.0358 -2.0325 24 6 8.4635 7.2268 -2.3840 25 7 6.2847 3.7605 -1.1969 26 6 5.6161 2.6810 -0.8550 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4983 1.4372 2.5982 33 1 3.1612 1.3206 3.2220 34 1 1.5005 3.6500 5.5416 35 1 5.9608 2.8530 2.5017 36 1 7.2233 4.8780 1.8056 37 1 8.4705 7.3455 -3.4675 38 1 7.9980 8.0992 -1.9255 39 1 9.4874 7.1294 -2.0230 40 1 5.1659 2.0680 -1.6219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490070584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:02 Heat of formation + Delta-G solvation = -88.604057 kcal Electronic energy + Delta-G solvation = -27675.330536 eV Core-core repulsion = 23583.779705 eV Total energy + Delta-G solvation = -4091.550831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96935 -39.66732 -36.95808 -36.70314 -36.48199 -35.47675 -33.32197 -32.86754 -32.01672 -31.85491 -28.18430 -27.62225 -25.21802 -25.04692 -23.82564 -22.44001 -21.60875 -19.78033 -18.86406 -18.48412 -17.61528 -17.23978 -16.98665 -16.62999 -16.44644 -16.41416 -15.63461 -15.00969 -14.58941 -14.54599 -14.30729 -14.29626 -13.77552 -13.30095 -13.28449 -13.14297 -13.07998 -12.58047 -12.33410 -12.29036 -11.89839 -11.70584 -11.41827 -11.27795 -11.16277 -11.05713 -11.02593 -10.95876 -10.85330 -10.62677 -10.35516 -10.09075 -9.96613 -9.73544 -9.60129 -9.12850 -8.59995 -8.26452 -6.22122 -4.30147 -0.00355 0.79204 1.10602 2.08475 2.31960 2.56422 3.18802 3.25344 3.26665 3.37048 3.60781 3.92103 4.11085 4.27167 4.42786 4.60005 4.81185 4.86615 4.88371 4.95157 5.11357 5.16537 5.23091 5.26760 5.37655 5.51100 5.58709 5.66860 5.83757 6.02979 6.04811 6.21232 6.31583 6.34880 6.91365 6.97856 7.22692 7.24014 7.28087 7.46580 7.61685 7.73337 8.01051 8.74313 9.37240 10.85492 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.004755 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.832700 B = 5887.230556 C = 7576.906256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.154 3.846 4 N -0.972 5.972 5 C 0.243 3.757 6 C -0.548 4.548 7 H 0.060 0.940 8 C 0.071 3.929 9 N -0.885 5.885 10 Si 0.888 3.112 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.275 1.275 14 S 2.690 3.310 15 O -0.966 6.966 16 O -0.947 6.947 17 C -0.695 4.695 18 C 0.042 3.958 19 C -0.125 4.125 20 C 0.128 3.872 21 C 0.524 3.476 22 O -0.492 6.492 23 O -0.333 6.333 24 C 0.033 3.967 25 N -0.452 5.452 26 C 0.188 3.812 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.267 0.733 35 H 0.169 0.831 36 H 0.158 0.842 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.631 1.087 -11.590 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.182 4.182 3 C 0.028 3.972 4 N -0.811 5.811 5 C 0.122 3.878 6 C -0.588 4.588 7 H 0.078 0.922 8 C -0.134 4.134 9 N -0.522 5.522 10 Si 0.715 3.285 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.200 1.200 14 S 2.776 3.224 15 O -0.956 6.956 16 O -0.937 6.937 17 C -0.779 4.779 18 C 0.016 3.984 19 C -0.146 4.146 20 C -0.008 4.008 21 C 0.366 3.634 22 O -0.379 6.379 23 O -0.247 6.247 24 C -0.061 4.061 25 N -0.164 5.164 26 C 0.027 3.973 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.187 0.813 36 H 0.176 0.824 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.216 0.848 -11.946 13.982 hybrid contribution 0.021 1.939 0.919 2.146 sum 7.238 2.787 -11.027 13.481 Atomic orbital electron populations 1.23798 0.95805 1.01675 1.00900 1.23399 0.96332 0.99132 0.99380 1.20270 0.93165 0.95914 0.87809 1.57414 1.23202 1.82436 1.18096 1.19322 0.97511 0.94854 0.76145 1.21471 1.45616 0.91880 0.99796 0.92228 1.24890 0.94743 0.98249 0.95474 1.69906 1.42407 1.35756 1.04129 0.86724 0.78756 0.85549 0.77484 1.20146 1.20959 1.20022 1.02212 0.73138 0.73622 0.73419 1.93545 1.86907 1.62613 1.52548 1.93578 1.80038 1.79950 1.40167 1.32745 1.17025 1.25858 1.02288 1.21505 0.86737 0.89437 1.00730 1.22203 0.98913 0.97965 0.95530 1.20232 0.96678 0.93243 0.90662 1.20835 0.77496 0.83817 0.81256 1.90866 1.44149 1.49111 1.53732 1.86691 1.67809 1.44844 1.25402 1.23371 0.95671 0.85080 1.01956 1.67713 1.07464 1.04295 1.36944 1.22584 0.90606 0.90925 0.93211 0.88364 0.88782 0.87326 0.89211 0.90565 0.93546 0.92696 0.92341 0.81334 0.82393 0.87695 0.91638 0.91704 0.80348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 14.32 29.01 0.42 -2.03 16 2 C -0.16 -2.41 9.84 -36.03 -0.35 -2.77 16 3 C 0.15 2.43 5.78 -5.19 -0.03 2.40 16 4 N -0.97 -18.12 2.75 -116.95 -0.32 -18.44 16 5 C 0.24 5.53 5.43 -5.20 -0.03 5.50 16 6 C -0.55 -13.41 9.38 -34.44 -0.32 -13.73 16 7 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.88 -24.01 13.29 55.43 0.74 -23.27 16 10 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 14 S 2.69 47.97 5.66 -107.50 -0.61 47.36 16 15 O -0.97 -17.03 16.28 -57.17 -0.93 -17.96 16 16 O -0.95 -19.49 15.90 -57.17 -0.91 -20.40 16 17 C -0.69 -11.40 6.00 -39.31 -0.24 -11.63 16 18 C 0.04 0.69 9.64 -39.31 -0.38 0.31 16 19 C -0.13 -1.92 9.63 -39.04 -0.38 -2.29 16 20 C 0.13 2.01 6.75 -83.03 -0.56 1.45 16 21 C 0.52 7.81 7.95 34.76 0.28 8.08 16 22 O -0.49 -7.84 16.11 -19.21 -0.31 -8.15 16 23 O -0.33 -4.38 10.38 -40.44 -0.42 -4.80 16 24 C 0.03 0.29 10.56 101.05 1.07 1.36 16 25 N -0.45 -7.14 10.12 -9.81 -0.10 -7.24 16 26 C 0.19 2.84 10.68 -17.56 -0.19 2.65 16 27 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 28 H 0.09 1.09 8.06 -52.48 -0.42 0.66 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.09 1.42 7.76 -51.93 -0.40 1.02 16 31 H 0.08 1.02 7.61 -51.93 -0.40 0.62 16 32 H 0.05 1.11 8.11 -51.93 -0.42 0.69 16 33 H 0.06 1.36 6.91 -51.93 -0.36 1.00 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.17 2.69 7.70 -52.49 -0.40 2.28 16 36 H 0.16 2.14 7.64 -52.48 -0.40 1.74 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.18 2.21 7.63 -52.48 -0.40 1.81 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -30.95 370.63 -7.96 -38.92 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.85 Total: 2.30 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.81 Total: -8.98 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.32 Total: -48.95 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -2.57 Total: -51.30 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 47.97 SS G_CDS: -0.61 Total: 47.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.95 -7.96 -38.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490070584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.688 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds