Wall clock time and date at job start Sat Apr 11 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50700 * 120.00585 * 2 1 4 4 N 1.46497 * 109.47416 * 124.99936 * 3 2 1 5 5 C 1.46498 * 119.99916 * 275.00259 * 4 3 2 6 6 C 1.50707 * 109.47250 * 274.99877 * 5 4 3 7 7 H 1.08001 * 119.99817 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99955 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00099 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99991 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47020 * 60.00045 * 10 8 6 12 12 H 1.48500 * 109.47336 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46762 * 300.00306 * 10 8 6 14 14 S 1.65601 * 120.00025 * 95.00529 * 4 3 2 15 15 O 1.42105 * 104.27373 * 333.92478 * 14 4 3 16 16 O 1.42106 * 104.27439 * 206.07262 * 14 4 3 17 17 C 1.81397 * 104.45105 * 89.99860 * 14 4 3 18 18 C 1.50694 * 109.47079 * 179.97438 * 17 14 4 19 19 C 1.38257 * 120.00171 * 270.02229 * 18 17 14 20 20 C 1.38217 * 120.00124 * 179.97438 * 19 18 17 21 21 C 1.38258 * 119.99907 * 359.76573 * 20 19 18 22 22 C 1.38216 * 119.99766 * 0.46893 * 21 20 19 23 23 N 1.48026 * 119.99744 * 179.78745 * 22 21 20 24 24 O 1.21799 * 119.99956 * 179.72731 * 23 22 21 25 25 O 1.21802 * 120.00016 * 359.44228 * 23 22 21 26 26 C 1.38215 * 120.00134 * 89.99814 * 18 17 14 27 27 H 1.08004 * 120.00790 * 180.02562 * 1 2 3 28 28 H 1.08008 * 120.00011 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.00011 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46746 * 5.00008 * 3 2 1 31 31 H 1.08998 * 109.47380 * 245.00474 * 3 2 1 32 32 H 1.09000 * 109.47438 * 35.00115 * 5 4 3 33 33 H 1.09000 * 109.47378 * 154.99960 * 5 4 3 34 34 H 0.96998 * 120.00101 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47223 * 60.00081 * 17 14 4 36 36 H 1.09000 * 109.47020 * 300.00273 * 17 14 4 37 37 H 1.08001 * 120.00180 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.99804 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.00234 * 180.24572 * 21 20 19 40 40 H 1.08005 * 119.99743 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5285 1.7620 2.4522 6 6 2.5992 3.2646 2.5449 7 1 2.9548 3.8413 1.7039 8 6 2.2090 3.9029 3.7030 9 7 1.7756 3.2006 4.7270 10 14 2.2960 5.7654 3.8177 11 1 1.4340 6.3667 2.7687 12 1 1.8245 6.2015 5.1566 13 1 3.6994 6.2085 3.6191 14 16 4.5713 0.8758 0.9172 15 8 4.5314 -0.0151 -0.1892 16 8 4.9848 0.4305 2.2018 17 6 5.4291 2.4099 0.4687 18 6 6.8912 2.1212 0.2459 19 6 7.7809 2.2042 1.3010 20 6 9.1219 1.9388 1.0967 21 6 9.5728 1.5857 -0.1616 22 6 8.6842 1.5074 -1.2174 23 7 9.1678 1.1339 -2.5656 24 8 8.3840 1.0601 -3.4949 25 8 10.3505 0.9054 -2.7468 26 6 7.3429 1.7729 -1.0131 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4025 -0.9314 32 1 1.4984 1.4371 2.5982 33 1 3.1613 1.3204 3.2220 34 1 1.5014 3.6497 5.5419 35 1 5.3211 3.1356 1.2748 36 1 4.9949 2.8150 -0.4454 37 1 7.4280 2.4764 2.2848 38 1 9.8168 2.0041 1.9208 39 1 10.6200 1.3745 -0.3204 40 1 6.6479 1.7080 -1.8373 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490107412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:05 Heat of formation + Delta-G solvation = -25.733244 kcal Electronic energy + Delta-G solvation = -27380.120335 eV Core-core repulsion = 23291.295786 eV Total energy + Delta-G solvation = -4088.824548 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.32435 -39.83879 -36.84136 -36.70312 -36.47891 -35.54729 -33.68509 -33.32222 -32.13781 -32.02530 -27.91450 -27.63352 -26.75261 -25.05670 -23.02941 -22.55622 -22.00763 -19.76998 -19.27643 -18.79098 -18.35268 -17.67424 -17.09116 -16.86860 -16.66515 -16.21605 -16.05518 -15.67541 -14.92965 -14.71209 -14.57151 -14.00223 -13.79231 -13.44858 -13.13175 -12.80003 -12.60799 -12.48019 -12.26899 -11.99133 -11.90936 -11.73074 -11.68066 -11.41166 -11.31718 -11.29016 -11.26784 -11.17168 -10.96198 -10.85992 -10.62286 -10.22723 -10.00200 -9.86994 -9.36029 -9.11674 -8.64205 -8.22512 -6.25905 -4.35251 -0.36293 0.29504 0.82686 1.17543 1.21934 2.53367 2.96846 3.13625 3.16579 3.21492 3.22983 3.83237 4.10391 4.20541 4.23184 4.33866 4.50326 4.57268 4.62656 4.81328 5.06483 5.13719 5.17243 5.23668 5.37597 5.40751 5.58783 5.60222 5.66494 5.82621 5.95611 6.03857 6.22685 6.26697 6.32697 6.93261 6.98988 7.23939 7.27077 7.47465 7.49816 7.69206 7.97330 8.69169 9.32095 10.81663 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011974 B = 0.003810 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.849237 B = 7347.138736 C = 8773.565441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.155 3.845 4 N -0.976 5.976 5 C 0.242 3.758 6 C -0.554 4.554 7 H 0.061 0.939 8 C 0.068 3.932 9 N -0.884 5.884 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.276 1.276 14 S 2.606 3.394 15 O -0.964 6.964 16 O -0.944 6.944 17 C -0.602 4.602 18 C -0.076 4.076 19 C -0.054 4.054 20 C -0.112 4.112 21 C -0.056 4.056 22 C -0.044 4.044 23 N 0.030 4.970 24 O -0.156 6.156 25 O -0.162 6.162 26 C -0.048 4.048 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.267 0.733 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 -0.907 -7.799 12.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.029 3.971 4 N -0.814 5.814 5 C 0.120 3.880 6 C -0.593 4.593 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.521 5.521 10 Si 0.720 3.280 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.201 1.201 14 S 2.697 3.303 15 O -0.954 6.954 16 O -0.935 6.935 17 C -0.726 4.726 18 C -0.079 4.079 19 C -0.073 4.073 20 C -0.131 4.131 21 C -0.075 4.075 22 C -0.127 4.127 23 N 0.550 4.450 24 O -0.373 6.373 25 O -0.378 6.378 26 C -0.068 4.068 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.180 0.820 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.174 0.826 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.201 -1.553 -6.832 11.565 hybrid contribution -0.019 1.798 -0.295 1.822 sum 9.182 0.245 -7.128 11.626 Atomic orbital electron populations 1.23786 0.95795 1.01629 1.01258 1.23404 0.96276 0.99277 0.99047 1.20244 0.93174 0.95826 0.87870 1.57428 1.23533 1.82589 1.17833 1.19293 0.97481 0.94648 0.76528 1.21522 1.45993 0.91954 0.99844 0.92044 1.24949 0.94706 0.98494 0.95471 1.69918 1.42199 1.35869 1.04123 0.86646 0.78563 0.85200 0.77543 1.20063 1.21003 1.20147 1.05185 0.74501 0.76307 0.74355 1.93560 1.86222 1.59977 1.55690 1.93581 1.82088 1.78520 1.39285 1.30032 1.01372 1.26787 1.14390 1.19119 0.94482 1.01526 0.92743 1.21849 0.92925 0.92518 1.00033 1.21273 0.96067 0.99308 0.96438 1.21149 1.00748 0.94629 0.90981 1.21045 0.95364 1.12937 0.83348 1.43578 1.00687 0.97830 1.02932 1.94563 1.52852 1.55565 1.34306 1.94520 1.00404 1.52790 1.90054 1.21052 0.93464 0.93688 0.98572 0.88830 0.88383 0.87395 0.89347 0.90732 0.93816 0.92679 0.92303 0.82034 0.83906 0.82588 0.82779 0.82620 0.82229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.32 29.02 0.42 -2.20 16 2 C -0.16 -2.52 9.84 -36.02 -0.35 -2.88 16 3 C 0.15 2.49 5.69 -5.20 -0.03 2.46 16 4 N -0.98 -18.30 2.68 -116.95 -0.31 -18.61 16 5 C 0.24 5.57 5.41 -5.19 -0.03 5.54 16 6 C -0.55 -13.27 9.38 -34.44 -0.32 -13.60 16 7 H 0.06 1.36 7.81 -52.49 -0.41 0.95 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.88 -23.87 13.29 55.43 0.74 -23.13 16 10 Si 0.89 19.26 29.54 -169.99 -5.02 14.24 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 14 S 2.61 45.67 5.35 -107.50 -0.58 45.09 16 15 O -0.96 -17.77 16.99 -57.54 -0.98 -18.75 16 16 O -0.94 -19.56 16.53 -57.54 -0.95 -20.51 16 17 C -0.60 -8.09 6.30 36.00 0.23 -7.86 16 18 C -0.08 -0.96 5.14 -104.63 -0.54 -1.50 16 19 C -0.05 -0.60 9.70 -39.58 -0.38 -0.98 16 20 C -0.11 -0.99 10.05 -39.58 -0.40 -1.39 16 21 C -0.06 -0.55 9.56 -39.58 -0.38 -0.92 16 22 C -0.04 -0.55 6.85 -79.95 -0.55 -1.10 16 23 N 0.03 0.42 4.45 33.96 0.15 0.57 16 24 O -0.16 -2.33 18.45 -29.46 -0.54 -2.87 16 25 O -0.16 -2.26 18.45 -29.46 -0.54 -2.80 16 26 C -0.05 -0.60 9.21 -39.58 -0.36 -0.97 16 27 H 0.09 1.15 8.06 -52.48 -0.42 0.72 16 28 H 0.10 1.30 7.84 -52.48 -0.41 0.89 16 29 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.09 1.40 7.76 -51.93 -0.40 0.99 16 31 H 0.07 1.01 7.61 -51.93 -0.40 0.62 16 32 H 0.04 1.07 8.11 -51.93 -0.42 0.65 16 33 H 0.06 1.39 6.82 -51.93 -0.35 1.04 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.16 2.15 8.08 -51.92 -0.42 1.73 16 36 H 0.14 1.55 8.09 -51.92 -0.42 1.13 16 37 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.16 1.19 7.61 -52.49 -0.40 0.79 16 40 H 0.16 1.87 7.61 -52.48 -0.40 1.47 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -31.13 371.85 -10.09 -41.23 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.86 Total: 3.71 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -2.80 Total: -23.77 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.57 Total: -41.17 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -3.02 Total: -44.94 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Atomic # 16 Polarization: 45.67 SS G_CDS: -0.58 Total: 45.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.13 -10.09 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490107412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.493 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds