Wall clock time and date at job start Sat Apr 11 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46492 * 120.00155 * 2 1 4 4 H 1.08998 * 110.88881 * 177.57515 * 3 2 1 5 5 C 1.55160 * 111.00861 * 301.45931 * 3 2 1 6 6 C 1.54327 * 102.94460 * 153.57492 * 5 3 2 7 7 N 1.47020 * 107.26855 * 337.80719 * 6 5 3 8 8 S 1.65600 * 125.64411 * 178.98906 * 7 6 5 9 9 C 1.81406 * 104.45151 * 89.97449 * 8 7 6 10 10 O 1.42099 * 104.27551 * 206.04182 * 8 7 6 11 11 O 1.42098 * 104.27844 * 333.90015 * 8 7 6 12 12 C 1.47425 * 108.70650 * 358.93712 * 7 6 5 13 13 S 1.65603 * 119.99580 * 180.02562 * 2 1 3 14 14 O 1.42090 * 104.28138 * 333.92790 * 13 2 1 15 15 O 1.42103 * 104.27241 * 206.06575 * 13 2 1 16 16 C 1.81402 * 104.44809 * 90.00114 * 13 2 1 17 17 C 1.52999 * 109.47096 * 179.97438 * 16 13 2 18 18 C 1.50702 * 109.47522 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 H 1.08996 * 109.46665 * 269.99754 * 1 2 3 27 27 H 1.08998 * 109.46801 * 29.99498 * 1 2 3 28 28 H 1.09002 * 109.47123 * 149.99743 * 1 2 3 29 29 H 1.09000 * 110.71588 * 271.93564 * 5 3 2 30 30 H 1.09000 * 110.71445 * 35.20662 * 5 3 2 31 31 H 1.09001 * 109.88007 * 97.22080 * 6 5 3 32 32 H 1.08993 * 109.87835 * 218.23427 * 6 5 3 33 33 H 1.09003 * 109.46869 * 59.99687 * 9 8 7 34 34 H 1.08998 * 109.47267 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.46619 * 300.00275 * 9 8 7 36 36 H 1.08995 * 110.37256 * 265.29274 * 12 7 6 37 37 H 1.09005 * 110.36616 * 142.96483 * 12 7 6 38 38 H 1.08995 * 109.47513 * 59.99848 * 16 13 2 39 39 H 1.09001 * 109.46953 * 299.99521 * 16 13 2 40 40 H 1.09000 * 109.47527 * 59.99645 * 17 16 13 41 41 H 1.09001 * 109.47054 * 299.99735 * 17 16 13 42 42 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 1 3.2730 1.0965 0.0431 5 6 1.8211 2.1284 -1.2356 6 6 2.0897 3.5683 -0.7496 7 7 2.0421 3.5491 0.7197 8 16 2.2929 4.8520 1.7105 9 6 0.6449 5.5778 1.9299 10 8 2.7532 4.2827 2.9283 11 8 3.1216 5.7181 0.9474 12 6 1.7329 2.1781 1.1648 13 16 2.2930 -1.4342 -0.0006 14 8 1.3970 -2.3564 0.6041 15 8 3.5395 -1.1194 0.6046 16 6 2.5193 -1.8254 -1.7575 17 6 3.2818 -3.1450 -1.8920 18 6 3.4704 -3.4698 -3.3515 19 1 3.0846 -2.8019 -4.1075 20 6 4.1346 -4.6199 -3.7216 21 7 4.2943 -4.9060 -4.9952 22 14 4.8013 -5.7754 -2.4140 23 1 6.1928 -5.3855 -2.0720 24 1 3.9511 -5.6917 -1.1994 25 1 4.7901 -7.1673 -2.9311 26 1 -0.3632 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 2.4586 1.8828 -2.0849 30 1 0.7695 1.9972 -1.4906 31 1 3.0743 3.8948 -1.0844 32 1 1.3243 4.2396 -1.1389 33 1 -0.0183 4.8422 2.3851 34 1 0.7161 6.4519 2.5772 35 1 0.2467 5.8749 0.9598 36 1 0.6614 2.0653 1.3299 37 1 2.2847 1.9410 2.0745 38 1 3.0866 -1.0279 -2.2372 39 1 1.5451 -1.9178 -2.2375 40 1 2.7149 -3.9428 -1.4122 41 1 4.2560 -3.0522 -1.4120 42 1 4.7581 -5.7172 -5.2557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490111865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:07 Heat of formation + Delta-G solvation = -161.901827 kcal Electronic energy + Delta-G solvation = -26438.628802 eV Core-core repulsion = 22479.343492 eV Total energy + Delta-G solvation = -3959.285310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99031 -38.23061 -38.19381 -37.06123 -37.02012 -36.11284 -35.87710 -33.46269 -31.19750 -30.23377 -29.60772 -27.91515 -27.09911 -23.46652 -23.17575 -21.84339 -19.97922 -19.87144 -19.41945 -18.76398 -18.68164 -17.54720 -17.19594 -17.08863 -16.87426 -16.42575 -16.18663 -15.62298 -15.18032 -14.83799 -14.78037 -14.65200 -14.39110 -14.13563 -13.94073 -13.90287 -13.80336 -13.64715 -13.35615 -13.24061 -13.21412 -13.13598 -13.06938 -12.94131 -12.78260 -12.49583 -12.47497 -12.29059 -12.22952 -11.96821 -11.94484 -11.71452 -11.57611 -11.23008 -10.84150 -10.09133 -9.79456 -8.36320 -6.41625 -0.80910 -0.68726 1.31844 1.34092 1.43546 1.53535 1.77629 2.29521 2.80129 2.97770 2.97870 3.05449 3.16526 3.42175 3.67371 3.88096 3.99610 4.04971 4.08889 4.13749 4.20072 4.36785 4.38049 4.57652 4.61004 4.74290 4.80773 4.85517 4.93666 4.97319 5.04098 5.07202 5.11025 5.14249 5.16766 5.34989 5.41962 5.48111 5.66683 6.17256 6.64647 7.22912 8.79061 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023489 B = 0.002753 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.740553 B =10166.903539 C =10408.074127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.986 5.986 3 C 0.123 3.877 4 H 0.099 0.901 5 C -0.139 4.139 6 C 0.116 3.884 7 N -1.016 6.016 8 S 2.626 3.374 9 C -0.642 4.642 10 O -0.999 6.999 11 O -0.992 6.992 12 C 0.108 3.892 13 S 2.610 3.390 14 O -0.984 6.984 15 O -0.991 6.991 16 C -0.585 4.585 17 C -0.018 4.018 18 C -0.525 4.525 19 H 0.052 0.948 20 C 0.014 3.986 21 N -0.939 5.939 22 Si 0.922 3.078 23 H -0.263 1.263 24 H -0.250 1.250 25 H -0.274 1.274 26 H 0.066 0.934 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.031 0.969 41 H 0.027 0.973 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.055 22.678 11.615 29.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.824 5.824 3 C 0.015 3.985 4 H 0.117 0.883 5 C -0.180 4.180 6 C -0.009 4.009 7 N -0.854 5.854 8 S 2.725 3.275 9 C -0.797 4.797 10 O -0.990 6.990 11 O -0.983 6.983 12 C -0.019 4.019 13 S 2.707 3.293 14 O -0.974 6.974 15 O -0.982 6.982 16 C -0.716 4.716 17 C -0.057 4.057 18 C -0.564 4.564 19 H 0.071 0.929 20 C -0.184 4.184 21 N -0.579 5.579 22 Si 0.745 3.255 23 H -0.188 1.188 24 H -0.173 1.173 25 H -0.199 1.199 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.171 0.829 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.872 22.420 12.707 28.806 hybrid contribution 0.102 -0.764 -0.613 0.984 sum -12.770 21.657 12.094 27.899 Atomic orbital electron populations 1.21845 0.76290 1.05077 1.03566 1.57196 1.16253 1.19296 1.89686 1.22185 0.96793 0.82821 0.96708 0.88310 1.23146 1.05240 0.92513 0.97055 1.21866 1.03045 0.98216 0.77742 1.58389 1.88202 1.21314 1.17532 1.04209 0.78616 0.72658 0.71992 1.30304 1.21110 1.14459 1.13818 1.93564 1.80935 1.77334 1.47185 1.93560 1.66438 1.67005 1.71312 1.22330 1.02589 0.79857 0.97152 1.04872 0.73031 0.73242 0.78111 1.93516 1.65198 1.63571 1.75153 1.93514 1.45858 1.83439 1.75353 1.30307 1.10890 1.07147 1.23264 1.19376 0.95845 0.92435 0.98070 1.21175 1.36524 1.07504 0.91170 0.92935 1.25843 0.95866 0.99433 0.97292 1.70001 1.43666 1.26965 1.17286 0.86067 0.80164 0.78833 0.80428 1.18770 1.17318 1.19914 0.91487 0.87088 0.90659 0.88980 0.86853 0.91714 0.87868 0.83318 0.83772 0.82855 0.87550 0.91176 0.84187 0.83791 0.95049 0.95448 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 8.87 127.77 1.13 2.15 16 2 N -0.99 -20.24 3.15 -509.25 -1.60 -21.85 16 3 C 0.12 2.30 3.41 46.39 0.16 2.46 16 4 H 0.10 2.30 6.94 -2.39 -0.02 2.29 16 5 C -0.14 -1.62 6.51 31.78 0.21 -1.41 16 6 C 0.12 1.30 6.90 86.73 0.60 1.89 16 7 N -1.02 -14.11 3.62 -506.42 -1.83 -15.94 16 8 S 2.63 38.86 6.29 -56.49 -0.36 38.50 16 9 C -0.64 -2.05 10.99 113.37 1.25 -0.81 16 10 O -1.00 -23.89 17.28 -127.65 -2.21 -26.10 16 11 O -0.99 -21.89 17.60 -127.65 -2.25 -24.14 16 12 C 0.11 1.71 6.64 86.86 0.58 2.29 16 13 S 2.61 81.76 5.37 -56.49 -0.30 81.46 16 14 O -0.98 -35.60 17.09 -127.65 -2.18 -37.78 16 15 O -0.99 -37.31 16.59 -127.65 -2.12 -39.43 16 16 C -0.58 -19.66 6.12 71.98 0.44 -19.22 16 17 C -0.02 -0.83 4.05 29.85 0.12 -0.71 16 18 C -0.52 -29.07 9.66 25.60 0.25 -28.82 16 19 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 20 C 0.01 0.82 5.47 84.65 0.46 1.28 16 21 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 22 Si 0.92 43.63 27.47 68.60 1.88 45.52 16 23 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 27 H 0.11 0.64 6.32 -2.39 -0.02 0.62 16 28 H 0.07 1.07 7.79 -2.39 -0.02 1.05 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 0.72 6.31 -2.39 -0.02 0.71 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.11 0.97 7.04 -2.39 -0.02 0.96 16 37 H 0.07 1.42 7.67 -2.38 -0.02 1.41 16 38 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 39 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 40 H 0.03 1.43 7.20 -2.39 -0.02 1.42 16 41 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 42 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -87.85 364.14 -4.52 -92.37 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.96 Total: 5.18 kcal Atomic # 6 Polarization: -46.09 SS G_CDS: 5.19 Total: -40.90 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -3.14 Total: -94.67 kcal Atomic # 8 Polarization: -118.69 SS G_CDS: -8.75 Total: -127.44 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 16 Polarization: 120.62 SS G_CDS: -0.66 Total: 119.96 kcal Total: -87.85 -4.52 -92.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490111865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.533 kcal (2) G-P(sol) polarization free energy of solvation -87.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds