Wall clock time and date at job start Sat Apr 11 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65603 * 120.00155 * 2 1 4 4 O 1.42102 * 106.40011 * 311.45547 * 3 2 1 5 5 O 1.42098 * 106.40320 * 178.54039 * 3 2 1 6 6 C 1.76200 * 107.21790 * 64.99672 * 3 2 1 7 7 C 1.37681 * 119.94014 * 115.00185 * 6 3 2 8 8 C 1.39987 * 119.87979 * 179.97438 * 7 6 3 9 9 C 1.46947 * 120.11489 * 180.02562 * 8 7 6 10 10 C 1.35130 * 120.00018 * 137.20274 * 9 8 7 11 11 C 1.41807 * 120.00061 * 345.72453 * 10 9 8 12 12 O 1.21780 * 119.99848 * 353.56149 * 11 10 9 13 13 N 1.34773 * 119.99859 * 173.55188 * 11 10 9 14 14 C 1.36754 * 120.00016 * 180.02562 * 13 11 10 15 15 H 1.07997 * 119.99819 * 0.02562 * 14 13 11 16 16 C 1.39093 * 119.99997 * 180.02562 * 14 13 11 17 17 N 1.31345 * 119.99362 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00113 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47099 * 90.00113 * 18 16 14 20 20 H 1.48501 * 109.46848 * 209.99995 * 18 16 14 21 21 H 1.48498 * 109.46974 * 329.99902 * 18 16 14 22 22 C 1.40030 * 119.76731 * 0.27787 * 8 7 6 23 23 C 1.37629 * 119.87742 * 359.41930 * 22 8 7 24 24 C 1.39007 * 119.94190 * 294.97744 * 6 3 2 25 25 O 1.35741 * 119.88031 * 359.97438 * 24 6 3 26 26 C 1.42902 * 116.99606 * 179.97438 * 25 24 6 27 27 H 1.08995 * 109.47245 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46973 * 300.00328 * 1 2 3 29 29 H 1.09001 * 109.46807 * 60.00495 * 1 2 3 30 30 H 0.97005 * 119.99854 * 179.97438 * 2 1 3 31 31 H 1.08000 * 120.05633 * 359.97438 * 7 6 3 32 32 H 1.08007 * 119.99773 * 317.20759 * 9 8 7 33 33 H 1.08003 * 120.00220 * 165.44759 * 10 9 8 34 34 H 0.97000 * 120.00185 * 0.02562 * 13 11 10 35 35 H 0.97002 * 119.99503 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.05289 * 179.71889 * 22 8 7 37 37 H 1.08013 * 119.93677 * 180.29706 * 23 22 8 38 38 H 1.09002 * 109.47519 * 300.00516 * 26 25 24 39 39 H 1.08999 * 109.46998 * 60.00440 * 26 25 24 40 40 H 1.08998 * 109.47107 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7121 2.2329 -1.0217 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2415 1.5253 7 6 2.9434 2.4520 2.4419 8 6 2.6598 3.0940 3.6531 9 6 3.7292 3.3218 4.6349 10 6 3.8158 4.5077 5.2767 11 6 3.0843 5.6260 4.8019 12 8 2.4720 5.5518 3.7519 13 7 3.0668 6.7709 5.5128 14 6 2.3610 7.8491 5.0552 15 1 1.8174 7.7831 4.1244 16 6 2.3433 9.0308 5.7887 17 7 1.6650 10.0662 5.3493 18 14 3.2841 9.1453 7.3983 19 1 4.6648 9.6227 7.1318 20 1 2.5973 10.0987 8.3063 21 1 3.3381 7.8055 8.0363 22 6 1.3525 3.5137 3.9281 23 6 0.3560 3.3039 3.0022 24 6 0.6429 2.6653 1.8009 25 8 -0.3446 2.4563 0.8933 26 6 -1.6524 2.9163 1.2401 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.9500 -0.8401 0.0004 31 1 3.9490 2.1223 2.2268 32 1 4.4461 2.5413 4.8433 33 1 4.4385 4.6028 6.1540 34 1 3.5547 6.8301 6.3491 35 1 1.6523 10.8902 5.8609 36 1 1.1277 4.0054 4.8630 37 1 -0.6517 3.6316 3.2113 38 1 -1.9826 2.4189 2.1521 39 1 -1.6273 3.9938 1.4026 40 1 -2.3447 2.6875 0.4299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491347507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:14 Heat of formation + Delta-G solvation = -76.400877 kcal Electronic energy + Delta-G solvation = -27702.451604 eV Core-core repulsion = 23611.429942 eV Total energy + Delta-G solvation = -4091.021662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21981 -38.95988 -37.37567 -36.84445 -35.63387 -34.93772 -34.36868 -32.82660 -31.92370 -31.13706 -29.28687 -27.31878 -26.01400 -25.46896 -23.42546 -22.49690 -21.16664 -19.55490 -19.15216 -18.57710 -17.86813 -17.60169 -16.83621 -16.45837 -16.09023 -16.02982 -15.61746 -15.06993 -14.61768 -14.28019 -14.14325 -14.04644 -13.69067 -13.45597 -13.41103 -13.15643 -12.77968 -12.75130 -12.44584 -12.12208 -12.07860 -11.89859 -11.85207 -11.74475 -11.54099 -11.36982 -11.25492 -11.01591 -10.73124 -10.48518 -10.17575 -9.81378 -9.59136 -9.38269 -8.94620 -8.55116 -8.29545 -7.48875 -6.56466 -3.94871 0.60567 1.00356 1.35857 2.10742 2.91258 2.96272 3.02779 3.10990 3.18587 3.81172 3.91213 3.97039 4.19442 4.55891 4.75743 4.89635 5.00701 5.06666 5.10706 5.13896 5.16185 5.27584 5.44400 5.48007 5.53388 5.56428 5.68977 5.77769 5.82803 5.86970 6.04482 6.15996 6.40635 6.51441 6.68768 6.82632 6.90803 6.93335 7.30123 7.38562 7.99832 8.40983 8.76777 9.22545 9.75028 10.54871 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019597 B = 0.003102 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.418135 B = 9024.401620 C = 9646.224798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.122 6.122 3 S 2.708 3.292 4 O -0.951 6.951 5 O -0.971 6.971 6 C -0.716 4.716 7 C 0.015 3.985 8 C -0.089 4.089 9 C -0.073 4.073 10 C -0.180 4.180 11 C 0.449 3.551 12 O -0.576 6.576 13 N -0.565 5.565 14 C -0.294 4.294 15 H 0.124 0.876 16 C 0.041 3.959 17 N -0.861 5.861 18 Si 0.883 3.117 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.267 1.267 22 C 0.062 3.938 23 C -0.232 4.232 24 C 0.218 3.782 25 O -0.314 6.314 26 C 0.024 3.976 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.414 0.586 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.372 0.628 35 H 0.278 0.722 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -20.113 -1.965 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.881 5.881 3 S 2.797 3.203 4 O -0.941 6.941 5 O -0.961 6.961 6 C -0.804 4.804 7 C -0.005 4.005 8 C -0.091 4.091 9 C -0.095 4.095 10 C -0.202 4.202 11 C 0.241 3.759 12 O -0.463 6.463 13 N -0.199 5.199 14 C -0.423 4.423 15 H 0.142 0.858 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.708 3.292 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.192 1.192 22 C 0.043 3.957 23 C -0.252 4.252 24 C 0.170 3.830 25 O -0.227 6.227 26 C -0.071 4.071 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.247 0.753 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.135 0.865 34 H 0.205 0.795 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.594 -19.447 -3.476 20.080 hybrid contribution 0.433 0.526 2.351 2.448 sum -3.161 -18.922 -1.125 19.217 Atomic orbital electron populations 1.21672 0.78438 1.02772 1.03181 1.55328 1.16257 1.24183 1.92292 1.01403 0.72333 0.72607 0.73961 1.93581 1.78408 1.67942 1.54137 1.93548 1.31318 1.83715 1.87516 1.29557 0.98149 1.27226 1.25516 1.20711 0.97125 0.91937 0.90713 1.18758 0.93640 1.01361 0.95307 1.21924 0.95832 0.96667 0.95039 1.22200 1.03076 0.94318 1.00557 1.16706 0.87960 0.83901 0.87327 1.90748 1.48492 1.82938 1.24159 1.42435 1.44069 1.12630 1.20816 1.19590 1.25393 0.88510 1.08828 0.85850 1.25205 0.97323 0.95239 0.98709 1.69601 1.38686 1.02876 1.38700 0.86606 0.80728 0.78817 0.83017 1.19254 1.19846 1.19194 1.21221 0.91067 0.85687 0.97739 1.21057 1.01072 1.07758 0.95308 1.18322 0.86470 0.90639 0.87571 1.86100 1.18198 1.75556 1.42807 1.23146 0.81037 1.00666 1.02254 0.91046 0.91014 0.91504 0.75306 0.83979 0.85508 0.86482 0.79487 0.91110 0.85633 0.85087 0.92265 0.91706 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 9.80 59.85 0.59 1.33 16 2 N -1.12 -11.43 6.19 -16.63 -0.10 -11.53 16 3 S 2.71 39.94 5.46 -107.50 -0.59 39.35 16 4 O -0.95 -17.10 17.01 -62.59 -1.06 -18.16 16 5 O -0.97 -15.88 16.96 -57.17 -0.97 -16.85 16 6 C -0.72 -11.53 5.89 -39.50 -0.23 -11.76 16 7 C 0.01 0.24 9.29 -39.13 -0.36 -0.12 16 8 C -0.09 -1.54 4.43 -105.04 -0.47 -2.00 16 9 C -0.07 -1.11 9.79 -37.16 -0.36 -1.48 16 10 C -0.18 -3.05 9.66 -39.32 -0.38 -3.43 16 11 C 0.45 9.96 6.57 -14.90 -0.10 9.86 16 12 O -0.58 -14.69 11.87 5.12 0.06 -14.63 16 13 N -0.56 -13.00 5.07 -13.56 -0.07 -13.07 16 14 C -0.29 -7.96 10.16 -15.04 -0.15 -8.11 16 15 H 0.12 3.84 7.38 -52.49 -0.39 3.45 16 16 C 0.04 1.07 5.50 -17.44 -0.10 0.98 16 17 N -0.86 -24.00 13.95 55.50 0.77 -23.22 16 18 Si 0.88 18.44 27.74 -169.99 -4.72 13.72 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.06 6.52 56.52 0.37 -4.69 16 22 C 0.06 1.09 6.75 -39.13 -0.26 0.83 16 23 C -0.23 -3.74 9.01 -39.50 -0.36 -4.09 16 24 C 0.22 3.42 6.19 -39.00 -0.24 3.17 16 25 O -0.31 -4.16 5.60 -29.02 -0.16 -4.33 16 26 C 0.02 0.22 9.80 101.05 0.99 1.21 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.64 5.29 -51.93 -0.27 0.37 16 29 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.41 3.11 8.96 -34.47 -0.31 2.81 16 31 H 0.14 2.09 7.32 -52.49 -0.38 1.70 16 32 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.37 7.49 5.72 -40.82 -0.23 7.25 16 35 H 0.28 7.11 8.31 -40.82 -0.34 6.78 16 36 H 0.13 2.24 7.14 -52.49 -0.37 1.87 16 37 H 0.13 1.79 6.27 -52.48 -0.33 1.46 16 38 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 39 H 0.06 0.67 7.65 -51.93 -0.40 0.28 16 40 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -36.15 345.60 -7.43 -43.58 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -4.37 Total: 13.54 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.44 Total: -13.62 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.60 Total: -47.82 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -2.14 Total: -53.96 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -4.72 Total: 13.72 kcal Atomic # 16 Polarization: 39.94 SS G_CDS: -0.59 Total: 39.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.15 -7.43 -43.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491347507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.821 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds