Wall clock time and date at job start Sat Apr 11 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35918 * 116.99833 * 2 1 4 4 C 1.38898 * 120.39117 * 359.97438 * 3 2 1 5 5 N 1.31896 * 121.05853 * 180.02562 * 4 3 2 6 6 C 1.31640 * 121.96525 * 359.97438 * 5 4 3 7 7 C 1.39810 * 120.65194 * 0.02562 * 6 5 4 8 8 C 1.47219 * 120.55941 * 179.97438 * 7 6 5 9 9 C 1.34806 * 120.00055 * 359.97438 * 8 7 6 10 10 C 1.46426 * 120.00192 * 180.02562 * 9 8 7 11 11 O 1.21703 * 119.99874 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00047 * 179.72507 * 10 9 8 13 13 S 1.65595 * 119.99844 * 180.27532 * 12 10 9 14 14 O 1.42101 * 104.27857 * 181.07051 * 13 12 10 15 15 O 1.42101 * 104.27918 * 308.92179 * 13 12 10 16 16 C 1.81398 * 104.45217 * 64.99656 * 13 12 10 17 17 C 1.53003 * 109.47288 * 180.02562 * 16 13 12 18 18 C 1.50694 * 109.47470 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99898 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00532 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99563 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00313 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47178 * 90.00125 * 22 20 18 24 24 H 1.48503 * 109.46995 * 209.99709 * 22 20 18 25 25 H 1.48495 * 109.47288 * 329.99972 * 22 20 18 26 26 C 1.38769 * 120.38922 * 180.28480 * 3 2 1 27 27 H 1.08997 * 109.46837 * 299.99908 * 1 2 3 28 28 H 1.08997 * 109.47230 * 60.00191 * 1 2 3 29 29 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.47235 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.67675 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.00315 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.99630 * 359.97438 * 9 8 7 34 34 H 0.97000 * 119.99736 * 0.26799 * 12 10 9 35 35 H 1.09004 * 109.47051 * 299.99757 * 16 13 12 36 36 H 1.08996 * 109.47535 * 60.00069 * 16 13 12 37 37 H 1.08997 * 109.47266 * 299.99921 * 17 16 13 38 38 H 1.09003 * 109.47419 * 59.99708 * 17 16 13 39 39 H 0.96997 * 119.99920 * 180.02562 * 21 20 18 40 40 H 1.08003 * 120.89227 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2975 2.3811 -0.0005 5 7 1.8825 3.5632 -0.0010 6 6 3.1926 3.6924 -0.0006 7 6 4.0200 2.5655 0.0000 8 6 5.4848 2.7124 -0.0001 9 6 6.0390 3.9412 -0.0012 10 6 7.4960 4.0874 -0.0018 11 8 8.2066 3.0994 -0.0008 12 7 8.0500 5.3160 -0.0085 13 16 9.6977 5.4812 -0.0160 14 8 9.9091 6.8862 0.0039 15 8 10.1373 4.6591 1.0564 16 6 10.2154 4.7820 -1.6077 17 6 11.7372 4.8767 -1.7356 18 6 12.1673 4.2964 -3.0582 19 1 11.4291 3.9001 -3.7396 20 6 13.5032 4.2714 -3.3984 21 7 14.4021 4.7545 -2.5687 22 14 14.0364 3.5515 -5.0375 23 1 14.0497 4.6214 -6.0672 24 1 15.3985 2.9749 -4.9052 25 1 13.0850 2.4859 -5.4430 26 6 3.4313 1.2931 -0.0060 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2191 2.3219 -0.0014 31 1 3.6326 4.6788 -0.0006 32 1 6.1155 1.8356 0.0008 33 1 5.4083 4.8180 -0.0024 34 1 7.4836 6.1034 -0.0089 35 1 9.9111 3.7367 -1.6617 36 1 9.7470 5.3391 -2.4190 37 1 12.0420 5.9218 -1.6815 38 1 12.2054 4.3193 -0.9243 39 1 15.3419 4.7373 -2.8082 40 1 4.0397 0.4008 -0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492520610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:27 Heat of formation + Delta-G solvation = -96.732433 kcal Electronic energy + Delta-G solvation = -25618.296779 eV Core-core repulsion = 21526.393475 eV Total energy + Delta-G solvation = -4091.903304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17690 -40.10112 -38.73051 -36.70283 -35.61524 -35.00025 -34.45463 -33.88492 -32.29604 -31.17424 -30.10165 -28.15371 -25.66340 -25.26607 -24.15177 -22.55523 -21.64186 -20.41171 -19.34742 -18.58525 -18.12598 -17.54463 -17.47074 -16.80199 -16.48522 -16.44537 -15.78778 -15.36432 -14.96239 -14.85517 -14.74355 -14.56414 -14.44480 -14.21515 -13.65893 -13.42794 -13.02965 -12.74113 -12.53483 -12.37696 -12.19841 -12.12336 -11.79978 -11.71810 -11.60986 -11.36680 -11.07737 -10.99489 -10.86034 -10.49847 -10.37810 -10.31265 -9.99887 -9.70661 -9.45680 -9.17412 -8.83949 -8.48920 -6.11260 -4.16566 -0.17883 0.50912 0.74468 1.36601 2.52951 2.67931 2.81384 3.27641 3.33060 3.33825 3.37164 3.82691 3.94795 4.04453 4.11219 4.33337 4.37433 4.38380 4.46519 4.55763 4.59589 4.66594 4.79318 4.86516 4.94668 4.95499 5.24058 5.34155 5.39908 5.57313 5.69831 5.74503 5.85682 5.94963 6.47101 6.60047 6.65461 7.29554 7.36211 7.37025 7.42995 7.81855 8.17799 8.86350 9.47847 10.99813 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.002094 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.553932 B =13365.467794 C =14571.465453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.077 3.923 4 C 0.025 3.975 5 N -0.448 5.448 6 C 0.082 3.918 7 C -0.084 4.084 8 C -0.013 4.013 9 C -0.199 4.199 10 C 0.567 3.433 11 O -0.491 6.491 12 N -1.054 6.054 13 S 2.567 3.433 14 O -0.954 6.954 15 O -0.938 6.938 16 C -0.575 4.575 17 C 0.029 3.971 18 C -0.519 4.519 19 H 0.062 0.938 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.085 4.085 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.160 0.840 31 H 0.166 0.834 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.429 0.571 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.265 0.735 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.220 -4.952 5.105 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.029 3.971 4 C -0.132 4.132 5 N -0.156 5.156 6 C -0.077 4.077 7 C -0.086 4.086 8 C -0.033 4.033 9 C -0.222 4.222 10 C 0.355 3.645 11 O -0.365 6.365 12 N -0.815 5.815 13 S 2.668 3.332 14 O -0.944 6.944 15 O -0.928 6.928 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.111 4.111 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.177 0.823 31 H 0.183 0.817 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.264 0.736 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -29.504 -4.725 5.894 30.456 hybrid contribution 0.057 -0.764 -1.422 1.615 sum -29.447 -5.488 4.472 30.286 Atomic orbital electron populations 1.23168 0.77649 1.04689 1.01691 1.86117 1.21910 1.25715 1.88449 1.19950 0.92989 0.85969 0.98156 1.23074 1.00779 0.87166 1.02227 1.67517 1.12225 1.26006 1.09897 1.23072 0.88487 0.98704 0.97440 1.19825 0.94061 0.93398 1.01307 1.22333 0.91673 0.98783 0.90545 1.23001 0.93485 0.99107 1.06574 1.18161 0.89771 0.82194 0.74329 1.91036 1.63485 1.36647 1.45306 1.55308 1.31171 1.14389 1.80609 1.06668 0.72118 0.75007 0.79456 1.93593 1.82473 1.30185 1.88192 1.93598 1.77940 1.69781 1.51446 1.30337 1.11437 1.12625 1.16589 1.18994 0.82862 0.99108 1.00050 1.20975 0.92430 1.40741 1.01674 0.91974 1.25069 0.96617 0.95300 0.97540 1.69955 1.01622 1.45287 1.35945 0.86442 0.78043 0.79297 0.83338 1.20483 1.21000 1.19745 1.21173 0.91894 0.98241 0.99825 0.92235 0.92215 0.87644 0.82257 0.81739 0.83518 0.84236 0.73562 0.85051 0.86022 0.94742 0.94542 0.92524 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.82 101.05 0.99 1.06 16 2 O -0.31 -2.15 10.51 -19.48 -0.20 -2.35 16 3 C 0.08 0.58 6.70 -39.14 -0.26 0.32 16 4 C 0.03 0.18 10.21 -17.28 -0.18 0.01 16 5 N -0.45 -3.94 10.34 -12.71 -0.13 -4.07 16 6 C 0.08 0.63 10.58 -17.05 -0.18 0.45 16 7 C -0.08 -0.65 5.88 -104.93 -0.62 -1.27 16 8 C -0.01 -0.11 9.48 -37.15 -0.35 -0.46 16 9 C -0.20 -1.69 9.42 -37.50 -0.35 -2.04 16 10 C 0.57 7.24 7.48 -12.96 -0.10 7.15 16 11 O -0.49 -8.27 14.33 -11.94 -0.17 -8.44 16 12 N -1.05 -12.87 5.60 30.20 0.17 -12.70 16 13 S 2.57 45.91 5.11 -107.50 -0.55 45.36 16 14 O -0.95 -18.62 18.08 -57.54 -1.04 -19.66 16 15 O -0.94 -20.36 17.04 -64.79 -1.10 -21.47 16 16 C -0.58 -11.31 5.82 37.16 0.22 -11.09 16 17 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 22 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 C -0.09 -0.66 9.89 -38.65 -0.38 -1.04 16 27 H 0.06 0.12 7.67 -51.93 -0.40 -0.28 16 28 H 0.06 0.12 7.67 -51.93 -0.40 -0.27 16 29 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.16 0.74 6.30 -52.48 -0.33 0.41 16 31 H 0.17 0.86 6.18 -52.48 -0.32 0.54 16 32 H 0.15 1.27 7.52 -52.49 -0.39 0.87 16 33 H 0.14 0.67 6.10 -52.49 -0.32 0.35 16 34 H 0.43 3.33 8.77 -34.47 -0.30 3.03 16 35 H 0.13 2.54 7.19 -51.92 -0.37 2.16 16 36 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -38.99 364.06 -8.09 -47.08 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.50 Total: -0.19 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -1.76 Total: -19.58 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.77 Total: -42.63 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -2.52 Total: -51.92 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.55 Total: 45.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.99 -8.09 -47.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492520610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.652 kcal (2) G-P(sol) polarization free energy of solvation -38.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds