Wall clock time and date at job start Sat Apr 11 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65603 * 119.99970 * 2 1 4 4 O 1.42104 * 104.27757 * 308.93056 * 3 2 1 5 5 O 1.42097 * 104.28006 * 181.07159 * 3 2 1 6 6 C 1.81400 * 104.44807 * 65.00289 * 3 2 1 7 7 C 1.53001 * 109.47167 * 172.31559 * 6 3 2 8 8 H 1.09003 * 109.86977 * 297.31316 * 7 6 3 9 9 C 1.54327 * 109.88392 * 58.32901 * 7 6 3 10 10 C 1.55160 * 102.94275 * 141.61250 * 9 7 6 11 11 C 1.54914 * 101.57770 * 324.49864 * 10 9 7 12 12 N 1.47022 * 109.88112 * 176.13970 * 7 6 3 13 13 S 1.65593 * 125.65154 * 61.68721 * 12 7 6 14 14 O 1.42096 * 104.27847 * 210.12737 * 13 12 7 15 15 O 1.42103 * 104.27548 * 337.98678 * 13 12 7 16 16 C 1.81405 * 104.45071 * 94.05851 * 13 12 7 17 17 C 1.52998 * 109.47031 * 180.02562 * 16 13 12 18 18 C 1.50698 * 109.47034 * 179.97438 * 17 16 13 19 19 H 1.08007 * 120.00235 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00320 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99575 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00075 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47310 * 60.00208 * 22 20 18 24 24 H 1.48506 * 109.46825 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47056 * 299.99519 * 22 20 18 26 26 H 1.08996 * 109.46990 * 299.99627 * 1 2 3 27 27 H 1.09002 * 109.47396 * 59.99677 * 1 2 3 28 28 H 1.09005 * 109.46911 * 180.02562 * 1 2 3 29 29 H 0.96997 * 120.00334 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.47457 * 52.31372 * 6 3 2 31 31 H 1.09002 * 109.47363 * 292.31306 * 6 3 2 32 32 H 1.09001 * 110.71787 * 23.24651 * 9 7 6 33 33 H 1.08997 * 110.87011 * 260.04527 * 9 7 6 34 34 H 1.08996 * 111.00564 * 82.57163 * 10 9 7 35 35 H 1.08999 * 111.00202 * 206.42689 * 10 9 7 36 36 H 1.09006 * 110.36284 * 155.85260 * 11 10 9 37 37 H 1.09005 * 110.36326 * 278.16750 * 11 10 9 38 38 H 1.08998 * 109.46747 * 300.00030 * 16 13 12 39 39 H 1.08997 * 109.46906 * 60.00202 * 16 13 12 40 40 H 1.08998 * 109.47072 * 299.99454 * 17 16 13 41 41 H 1.08997 * 109.47419 * 60.00139 * 17 16 13 42 42 H 0.96997 * 119.99674 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1704 -1.0713 5 8 3.6606 1.0493 -0.0258 6 6 1.8765 2.1973 1.5921 7 6 2.7334 3.4479 1.7979 8 1 3.7871 3.1721 1.8413 9 6 2.4982 4.4417 0.6409 10 6 2.5181 5.8186 1.3559 11 6 1.8489 5.4753 2.7103 12 7 2.3391 4.1250 3.0419 13 16 2.4313 3.4787 4.5637 14 8 1.3691 4.1006 5.2737 15 8 2.4447 2.0742 4.3476 16 6 4.0355 4.0405 5.1977 17 6 4.2410 3.5013 6.6147 18 6 5.5739 3.9675 7.1411 19 1 6.2109 4.5862 6.5263 20 6 5.9802 3.6043 8.4076 21 7 5.2043 2.8514 9.1564 22 14 7.6321 4.1828 9.0603 23 1 7.6619 5.6672 9.0860 24 1 7.8316 3.6594 10.4357 25 1 8.7161 3.6810 8.1781 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 2.0698 1.4879 2.3967 31 1 0.8222 2.4743 1.5975 32 1 1.5305 4.2648 0.1714 33 1 3.2997 4.3777 -0.0949 34 1 3.5400 6.1680 1.5025 35 1 1.9308 6.5533 0.8051 36 1 2.1544 6.1885 3.4759 37 1 0.7638 5.4702 2.6067 38 1 4.8312 3.6722 4.5502 39 1 4.0573 5.1301 5.2164 40 1 3.4453 3.8693 7.2624 41 1 4.2194 2.4117 6.5956 42 1 5.4903 2.5956 10.0473 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494787319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:33 Heat of formation + Delta-G solvation = -144.834781 kcal Electronic energy + Delta-G solvation = -26747.874515 eV Core-core repulsion = 22789.329288 eV Total energy + Delta-G solvation = -3958.545227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.02654 -37.28710 -36.77444 -36.14930 -35.58190 -35.25577 -33.94462 -31.94877 -31.20597 -31.10603 -26.42157 -26.25196 -25.63637 -22.42964 -21.60409 -21.38051 -19.68114 -18.73370 -18.01375 -17.54211 -17.16168 -16.68048 -16.47854 -15.90770 -15.48946 -15.14552 -15.01617 -14.60535 -14.29045 -14.20690 -13.92628 -13.77667 -13.38877 -13.12010 -13.10181 -12.67825 -12.52463 -12.29023 -12.18024 -11.88323 -11.82107 -11.74380 -11.69763 -11.61364 -11.44565 -11.25487 -11.10158 -11.03588 -11.00359 -10.83982 -10.48695 -10.42869 -9.88128 -9.82931 -9.43113 -8.90617 -8.53551 -6.15986 -4.21883 0.04115 0.60638 2.49169 2.88454 3.25512 3.30310 3.32163 3.52673 4.01063 4.05376 4.11529 4.18984 4.32675 4.40674 4.60046 4.66511 4.78659 4.86556 5.04803 5.10311 5.19185 5.28155 5.37645 5.40834 5.43652 5.49448 5.53189 5.60874 5.63817 5.66119 5.81181 5.95590 6.03494 6.31131 6.41703 6.63849 7.23553 7.29492 7.76736 8.12885 8.81134 9.43121 10.95014 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.003187 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.762886 B = 8783.164227 C = 9170.995552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.124 6.124 3 S 2.617 3.383 4 O -0.955 6.955 5 O -0.954 6.954 6 C -0.665 4.665 7 C 0.173 3.827 8 H 0.094 0.906 9 C -0.160 4.160 10 C -0.125 4.125 11 C 0.118 3.882 12 N -1.007 6.007 13 S 2.601 3.399 14 O -0.958 6.958 15 O -0.961 6.961 16 C -0.588 4.588 17 C 0.028 3.972 18 C -0.522 4.522 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.901 3.099 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.419 0.581 30 H 0.167 0.833 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.587 0.141 -19.928 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.883 5.883 3 S 2.708 3.292 4 O -0.945 6.945 5 O -0.944 6.944 6 C -0.795 4.795 7 C 0.064 3.936 8 H 0.112 0.888 9 C -0.199 4.199 10 C -0.164 4.164 11 C -0.007 4.007 12 N -0.842 5.842 13 S 2.701 3.299 14 O -0.949 6.949 15 O -0.952 6.952 16 C -0.722 4.722 17 C -0.011 4.011 18 C -0.561 4.561 19 H 0.080 0.920 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.728 3.272 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.200 1.200 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.253 0.747 30 H 0.185 0.815 31 H 0.155 0.845 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.906 -0.044 -19.972 22.293 hybrid contribution 1.188 0.123 1.114 1.633 sum -8.718 0.079 -18.858 20.776 Atomic orbital electron populations 1.21518 0.78768 1.04383 1.01927 1.55369 1.16011 1.24691 1.92224 1.04834 0.73832 0.73864 0.76702 1.93592 1.78937 1.72190 1.49784 1.93620 1.32493 1.81098 1.87229 1.31400 1.11152 1.11167 1.25795 1.20838 0.97479 0.89485 0.85800 0.88810 1.23201 1.04546 0.95611 0.96514 1.22756 1.02196 0.96260 0.95148 1.22017 0.98946 0.82512 0.97227 1.58988 1.79444 1.24764 1.21047 1.05494 0.78474 0.74295 0.71615 1.93548 1.52536 1.77721 1.71090 1.93451 1.88186 1.29930 1.83647 1.30488 1.18678 1.11531 1.11472 1.18972 0.99703 0.97133 0.85262 1.20956 1.02173 1.32897 1.00103 0.92027 1.25069 0.97708 0.94897 0.96763 1.69942 1.37059 1.35691 1.10162 0.86508 0.83518 0.79082 0.78056 1.20051 1.21041 1.20011 0.92129 0.91339 0.89899 0.74732 0.81488 0.84478 0.88729 0.89217 0.89978 0.89488 0.90138 0.91088 0.85991 0.86115 0.94872 0.94783 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.50 11.03 59.85 0.66 1.16 16 2 N -1.12 -9.21 6.08 -16.63 -0.10 -9.31 16 3 S 2.62 27.90 4.94 -107.50 -0.53 27.37 16 4 O -0.96 -11.52 16.27 -57.54 -0.94 -12.45 16 5 O -0.95 -13.25 18.08 -57.54 -1.04 -14.29 16 6 C -0.66 -7.31 5.31 37.16 0.20 -7.12 16 7 C 0.17 2.02 3.16 -66.95 -0.21 1.81 16 8 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 9 C -0.16 -1.47 5.24 -24.89 -0.13 -1.60 16 10 C -0.12 -1.01 7.09 -24.58 -0.17 -1.18 16 11 C 0.12 1.24 6.94 -2.53 -0.02 1.22 16 12 N -1.01 -13.31 3.32 -104.41 -0.35 -13.66 16 13 S 2.60 45.66 5.62 -107.50 -0.60 45.06 16 14 O -0.96 -19.40 17.67 -57.54 -1.02 -20.41 16 15 O -0.96 -18.45 15.06 -57.54 -0.87 -19.32 16 16 C -0.59 -11.13 6.12 37.16 0.23 -10.90 16 17 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 18 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.07 0.41 8.04 -51.93 -0.42 -0.01 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.42 2.85 8.92 -34.47 -0.31 2.54 16 30 H 0.17 2.08 5.79 -51.93 -0.30 1.78 16 31 H 0.14 1.20 8.13 -51.92 -0.42 0.78 16 32 H 0.09 0.81 6.99 -51.93 -0.36 0.44 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 39 H 0.12 2.04 8.14 -51.93 -0.42 1.61 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -37.82 367.19 -10.61 -48.44 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.42 Total: 1.66 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 0.00 Total: -29.13 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.29 Total: -48.51 kcal Atomic # 8 Polarization: -62.62 SS G_CDS: -3.86 Total: -66.48 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 73.56 SS G_CDS: -1.14 Total: 72.42 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.82 -10.61 -48.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494787319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.398 kcal (2) G-P(sol) polarization free energy of solvation -37.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds