Wall clock time and date at job start Sat Apr 11 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99854 * 2 1 4 4 N 1.46499 * 109.47144 * 125.00462 * 3 2 1 5 5 C 1.46494 * 120.00318 * 274.99849 * 4 3 2 6 6 C 1.50701 * 109.47121 * 275.00055 * 5 4 3 7 7 H 1.07996 * 119.99796 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99717 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00258 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47105 * 59.99951 * 10 8 6 12 12 H 1.48495 * 109.47433 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47250 * 300.00300 * 10 8 6 14 14 S 1.65607 * 119.99969 * 94.99870 * 4 3 2 15 15 O 1.42097 * 106.40132 * 336.45937 * 14 4 3 16 16 O 1.42107 * 106.39904 * 203.54209 * 14 4 3 17 17 C 1.76199 * 107.21942 * 90.00109 * 14 4 3 18 18 C 1.38361 * 120.34349 * 269.72609 * 17 14 4 19 19 N 1.31938 * 121.08650 * 179.70034 * 18 17 14 20 20 C 1.31685 * 121.88268 * 0.58627 * 19 18 17 21 21 C 1.39568 * 120.56046 * 359.70234 * 20 19 18 22 22 C 1.47728 * 120.55973 * 179.97438 * 21 20 19 23 23 O 1.21473 * 119.99352 * 180.02562 * 22 21 20 24 24 O 1.34709 * 120.00323 * 0.02676 * 22 21 20 25 25 C 1.45192 * 117.00090 * 180.02562 * 24 22 21 26 26 C 1.38347 * 120.34482 * 89.99982 * 17 14 4 27 27 H 1.07998 * 119.99843 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99753 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99843 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47648 * 5.00247 * 3 2 1 31 31 H 1.09007 * 109.47135 * 245.00216 * 3 2 1 32 32 H 1.09005 * 109.46759 * 34.99436 * 5 4 3 33 33 H 1.09001 * 109.47722 * 154.99770 * 5 4 3 34 34 H 0.97002 * 119.99926 * 180.02562 * 9 8 6 35 35 H 1.07997 * 119.45580 * 359.97086 * 18 17 14 36 36 H 1.07997 * 119.71368 * 179.72774 * 20 19 18 37 37 H 1.08999 * 109.47246 * 299.99681 * 25 24 22 38 38 H 1.09003 * 109.47688 * 59.99612 * 25 24 22 39 39 H 1.08997 * 109.47258 * 179.97438 * 25 24 22 40 40 H 1.07996 * 120.85725 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5287 1.7620 2.4522 6 6 2.5994 3.2645 2.5449 7 1 2.9555 3.8412 1.7042 8 6 2.2093 3.9027 3.7032 9 7 1.7750 3.2004 4.7268 10 14 2.2975 5.7651 3.8184 11 1 1.4361 6.3674 2.7693 12 1 1.8248 6.2012 5.1568 13 1 3.7012 6.2074 3.6203 14 16 4.5714 0.8758 0.9171 15 8 4.5923 0.0262 -0.2217 16 8 5.0505 0.4762 2.1939 17 6 5.4769 2.3215 0.4760 18 6 5.6221 2.6769 -0.8533 19 7 6.2920 3.7594 -1.1998 20 6 6.8602 4.5417 -0.3058 21 6 6.7650 4.2494 1.0557 22 6 7.4029 5.1267 2.0586 23 8 7.3140 4.8623 3.2409 24 8 8.0832 6.2197 1.6621 25 6 8.6844 7.0352 2.7021 26 6 6.0550 3.1100 1.4549 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9315 32 1 1.4985 1.4370 2.5982 33 1 3.1615 1.3203 3.2220 34 1 1.5003 3.6496 5.5415 35 1 5.1759 2.0604 -1.6196 36 1 7.4041 5.4170 -0.6288 37 1 7.9064 7.4015 3.3718 38 1 9.3977 6.4355 3.2675 39 1 9.2008 7.8808 2.2478 40 1 5.9607 2.8538 2.4997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518156235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:35 Heat of formation + Delta-G solvation = -91.585630 kcal Electronic energy + Delta-G solvation = -28092.242390 eV Core-core repulsion = 24000.562268 eV Total energy + Delta-G solvation = -4091.680122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84729 -39.63187 -36.93635 -36.53047 -36.45345 -35.44796 -33.28935 -32.79637 -32.05185 -31.96321 -27.99067 -27.58887 -25.04884 -24.85635 -24.07194 -22.39234 -21.52255 -19.76673 -19.09153 -17.97707 -17.56103 -17.05056 -16.77694 -16.54667 -16.46681 -16.35471 -15.97083 -15.58723 -14.57141 -14.52468 -14.21877 -13.91598 -13.72961 -13.27149 -13.24235 -13.11369 -12.86424 -12.55597 -12.30611 -12.27131 -11.87299 -11.70659 -11.46264 -11.37426 -11.24324 -10.96474 -10.93096 -10.84749 -10.68064 -10.58326 -10.35434 -10.08583 -9.93625 -9.67416 -9.62198 -9.11697 -8.55622 -8.23488 -6.18124 -4.25716 0.24280 0.72993 0.92751 2.37323 2.48419 2.57639 3.21947 3.27492 3.28515 3.37810 3.61676 4.08380 4.15616 4.31151 4.40608 4.61091 4.72079 4.82174 4.97173 5.06042 5.08631 5.16146 5.20631 5.29213 5.38761 5.39372 5.59356 5.70073 5.86867 6.05590 6.17422 6.22519 6.27987 6.36456 6.92416 6.99405 7.25256 7.31498 7.49997 7.50333 7.63629 7.77070 8.04766 8.77859 9.41490 10.89712 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009733 B = 0.005646 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.147747 B = 4957.783831 C = 6808.163630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.155 3.845 4 N -0.973 5.973 5 C 0.243 3.757 6 C -0.548 4.548 7 H 0.058 0.942 8 C 0.071 3.929 9 N -0.884 5.884 10 Si 0.888 3.112 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.276 1.276 14 S 2.692 3.308 15 O -0.967 6.967 16 O -0.947 6.947 17 C -0.733 4.733 18 C 0.225 3.775 19 N -0.504 5.504 20 C 0.200 3.800 21 C -0.202 4.202 22 C 0.514 3.486 23 O -0.487 6.487 24 O -0.357 6.357 25 C 0.037 3.963 26 C 0.110 3.890 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.267 0.733 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.724 2.592 -9.851 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.182 4.182 3 C 0.029 3.971 4 N -0.812 5.812 5 C 0.122 3.878 6 C -0.587 4.587 7 H 0.077 0.923 8 C -0.133 4.133 9 N -0.521 5.521 10 Si 0.715 3.285 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.201 1.201 14 S 2.778 3.222 15 O -0.957 6.957 16 O -0.937 6.937 17 C -0.817 4.817 18 C 0.067 3.933 19 N -0.213 5.213 20 C 0.042 3.958 21 C -0.206 4.206 22 C 0.357 3.643 23 O -0.373 6.373 24 O -0.274 6.274 25 C -0.056 4.056 26 C 0.084 3.916 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.195 0.805 36 H 0.193 0.807 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.087 1.988 -10.048 13.050 hybrid contribution 0.010 1.874 1.183 2.216 sum 8.097 3.862 -8.865 12.612 Atomic orbital electron populations 1.23798 0.95797 1.01672 1.00919 1.23402 0.96339 0.99140 0.99362 1.20263 0.93162 0.95919 0.87787 1.57422 1.23250 1.82447 1.18086 1.19325 0.97501 0.94857 0.76144 1.21442 1.45608 0.91866 0.99802 0.92334 1.24880 0.94706 0.98240 0.95468 1.69902 1.42400 1.35718 1.04099 0.86717 0.78611 0.85705 0.77475 1.20128 1.20922 1.20145 1.02152 0.73106 0.73559 0.73410 1.93538 1.86984 1.62607 1.52610 1.93586 1.80005 1.79962 1.40165 1.32446 1.20321 1.27055 1.01908 1.22857 0.87152 0.90188 0.93086 1.67918 1.10556 1.05324 1.37519 1.23457 0.89095 0.95560 0.87643 1.20136 1.07178 0.98858 0.94471 1.20784 0.76184 0.79628 0.87728 1.90914 1.56736 1.71512 1.18174 1.86485 1.63966 1.36370 1.40627 1.23306 0.98027 0.93812 0.90505 1.21534 0.82152 0.86826 1.01112 0.88361 0.88781 0.87332 0.89212 0.90642 0.93517 0.92706 0.92365 0.80527 0.80698 0.91573 0.91657 0.87860 0.81216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 14.32 29.01 0.42 -2.08 16 2 C -0.16 -2.46 9.84 -36.03 -0.35 -2.82 16 3 C 0.15 2.49 5.78 -5.20 -0.03 2.46 16 4 N -0.97 -18.76 2.75 -116.95 -0.32 -19.09 16 5 C 0.24 5.75 5.43 -5.20 -0.03 5.72 16 6 C -0.55 -13.94 9.38 -34.44 -0.32 -14.27 16 7 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 8 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 9 N -0.88 -24.86 13.29 55.43 0.74 -24.12 16 10 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 S 2.69 50.01 5.66 -107.50 -0.61 49.40 16 15 O -0.97 -17.41 16.26 -57.17 -0.93 -18.34 16 16 O -0.95 -20.58 15.90 -57.17 -0.91 -21.49 16 17 C -0.73 -12.45 5.98 -39.50 -0.24 -12.68 16 18 C 0.22 3.31 10.68 -17.46 -0.19 3.12 16 19 N -0.50 -7.24 10.35 -12.90 -0.13 -7.38 16 20 C 0.20 2.71 10.79 -17.12 -0.18 2.53 16 21 C -0.20 -3.24 5.89 -104.84 -0.62 -3.86 16 22 C 0.51 8.31 7.91 34.61 0.27 8.59 16 23 O -0.49 -9.40 16.21 -19.24 -0.31 -9.72 16 24 O -0.36 -4.59 9.84 -40.52 -0.40 -4.98 16 25 C 0.04 0.36 10.56 101.05 1.07 1.43 16 26 C 0.11 1.98 9.18 -38.86 -0.36 1.62 16 27 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 28 H 0.09 1.11 8.06 -52.48 -0.42 0.68 16 29 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.09 1.45 7.76 -51.93 -0.40 1.05 16 31 H 0.08 1.02 7.61 -51.92 -0.40 0.62 16 32 H 0.05 1.15 8.11 -51.93 -0.42 0.73 16 33 H 0.06 1.42 6.91 -51.93 -0.36 1.06 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.18 2.12 7.61 -52.49 -0.40 1.72 16 36 H 0.18 1.77 7.62 -52.49 -0.40 1.37 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.17 3.33 7.38 -52.49 -0.39 2.94 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -32.41 369.84 -7.82 -40.23 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.83 Total: 2.42 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.66 Total: -8.42 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.28 Total: -50.58 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -2.55 Total: -54.53 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 50.01 SS G_CDS: -0.61 Total: 49.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.41 -7.82 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518156235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.358 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds