Wall clock time and date at job start Sat Apr 11 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50694 * 119.99854 * 2 1 4 4 N 1.46499 * 109.47144 * 125.00462 * 3 2 1 5 5 C 1.46494 * 120.00318 * 274.99849 * 4 3 2 6 6 C 1.50701 * 109.47121 * 275.00055 * 5 4 3 7 7 H 1.07996 * 119.99796 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99717 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00258 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47105 * 59.99951 * 10 8 6 12 12 H 1.48495 * 109.47433 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47250 * 300.00300 * 10 8 6 14 14 S 1.65607 * 119.99969 * 94.99870 * 4 3 2 15 15 O 1.42097 * 106.40132 * 336.45937 * 14 4 3 16 16 O 1.42107 * 106.39904 * 203.54209 * 14 4 3 17 17 C 1.76199 * 107.21942 * 90.00109 * 14 4 3 18 18 C 1.38361 * 120.34349 * 269.72609 * 17 14 4 19 19 N 1.31938 * 121.08650 * 179.70034 * 18 17 14 20 20 C 1.31685 * 121.88268 * 0.58627 * 19 18 17 21 21 C 1.39568 * 120.56046 * 359.70234 * 20 19 18 22 22 C 1.47728 * 120.55973 * 179.97438 * 21 20 19 23 23 O 1.21473 * 119.99352 * 180.02562 * 22 21 20 24 24 O 1.34709 * 120.00323 * 0.02676 * 22 21 20 25 25 C 1.45192 * 117.00090 * 180.02562 * 24 22 21 26 26 C 1.38347 * 120.34482 * 89.99982 * 17 14 4 27 27 H 1.07998 * 119.99843 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99753 * 180.02562 * 1 2 3 29 29 H 1.07998 * 119.99843 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47648 * 5.00247 * 3 2 1 31 31 H 1.09007 * 109.47135 * 245.00216 * 3 2 1 32 32 H 1.09005 * 109.46759 * 34.99436 * 5 4 3 33 33 H 1.09001 * 109.47722 * 154.99770 * 5 4 3 34 34 H 0.97002 * 119.99926 * 180.02562 * 9 8 6 35 35 H 1.07997 * 119.45580 * 359.97086 * 18 17 14 36 36 H 1.07997 * 119.71368 * 179.72774 * 20 19 18 37 37 H 1.08999 * 109.47246 * 299.99681 * 25 24 22 38 38 H 1.09003 * 109.47688 * 59.99612 * 25 24 22 39 39 H 1.08997 * 109.47258 * 179.97438 * 25 24 22 40 40 H 1.07996 * 120.85725 * 359.97438 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5287 1.7620 2.4522 6 6 2.5994 3.2645 2.5449 7 1 2.9555 3.8412 1.7042 8 6 2.2093 3.9027 3.7032 9 7 1.7750 3.2004 4.7268 10 14 2.2975 5.7651 3.8184 11 1 1.4361 6.3674 2.7693 12 1 1.8248 6.2012 5.1568 13 1 3.7012 6.2074 3.6203 14 16 4.5714 0.8758 0.9171 15 8 4.5923 0.0262 -0.2217 16 8 5.0505 0.4762 2.1939 17 6 5.4769 2.3215 0.4760 18 6 5.6221 2.6769 -0.8533 19 7 6.2920 3.7594 -1.1998 20 6 6.8602 4.5417 -0.3058 21 6 6.7650 4.2494 1.0557 22 6 7.4029 5.1267 2.0586 23 8 7.3140 4.8623 3.2409 24 8 8.0832 6.2197 1.6621 25 6 8.6844 7.0352 2.7021 26 6 6.0550 3.1100 1.4549 27 1 -0.5400 0.9353 0.0004 28 1 -0.5400 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6213 1.4026 -0.9315 32 1 1.4985 1.4370 2.5982 33 1 3.1615 1.3203 3.2220 34 1 1.5003 3.6496 5.5415 35 1 5.1759 2.0604 -1.6196 36 1 7.4041 5.4170 -0.6288 37 1 7.9064 7.4015 3.3718 38 1 9.3977 6.4355 3.2675 39 1 9.2008 7.8808 2.2478 40 1 5.9607 2.8538 2.4997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518156235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:35 Heat of formation + Delta-G solvation = -113.646804 kcal Electronic energy + Delta-G solvation = -28093.199035 eV Core-core repulsion = 24000.562268 eV Total energy + Delta-G solvation = -4092.636766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.05610 -40.81870 -38.46269 -37.95952 -37.71007 -37.00882 -35.03157 -34.06041 -33.55869 -33.25104 -29.37899 -28.89770 -26.56954 -26.03375 -25.32730 -24.19741 -22.73735 -20.98259 -20.42456 -19.34763 -18.80399 -18.69055 -18.35008 -17.95584 -17.61102 -17.58628 -17.38753 -17.05589 -16.34435 -15.86701 -15.39146 -15.24873 -14.92023 -14.67540 -14.57852 -14.36563 -14.24132 -14.02212 -13.83157 -13.45924 -13.26269 -13.18936 -13.11463 -13.03941 -12.85327 -12.53965 -12.35801 -12.32567 -12.05068 -11.94707 -11.91494 -11.71342 -11.51945 -10.93206 -10.85420 -10.62007 -10.27776 -9.86295 -8.22721 -6.35191 -0.96340 -0.70039 -0.43701 1.14470 1.33212 1.36110 1.38330 1.40402 1.42181 1.99322 2.30599 2.37052 2.66416 3.01856 3.08264 3.11055 3.44090 3.50604 3.53939 3.83338 3.92279 4.05780 4.18339 4.26160 4.27753 4.42885 4.47640 4.59329 4.67788 4.78273 4.96905 5.04661 5.09996 5.12090 5.27875 5.40641 5.67248 5.76192 5.81050 6.00570 6.04051 6.32122 6.44779 6.75816 7.34748 8.85122 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.009733 B = 0.005646 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.147747 B = 4957.783831 C = 6808.163630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.188 4.188 3 C 0.146 3.854 4 N -0.977 5.977 5 C 0.260 3.740 6 C -0.543 4.543 7 H 0.065 0.935 8 C 0.020 3.980 9 N -0.920 5.920 10 Si 0.942 3.058 11 H -0.260 1.260 12 H -0.283 1.283 13 H -0.281 1.281 14 S 2.704 3.296 15 O -0.960 6.960 16 O -0.988 6.988 17 C -0.741 4.741 18 C 0.236 3.764 19 N -0.500 5.500 20 C 0.222 3.778 21 C -0.214 4.214 22 C 0.517 3.483 23 O -0.530 6.530 24 O -0.345 6.345 25 C 0.028 3.972 26 C 0.088 3.912 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.032 0.968 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.208 0.792 36 H 0.217 0.783 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.147 0.853 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 4.435 -12.749 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.207 4.207 3 C 0.021 3.979 4 N -0.815 5.815 5 C 0.137 3.863 6 C -0.583 4.583 7 H 0.083 0.917 8 C -0.180 4.180 9 N -0.559 5.559 10 Si 0.768 3.232 11 H -0.184 1.184 12 H -0.208 1.208 13 H -0.207 1.207 14 S 2.793 3.207 15 O -0.950 6.950 16 O -0.978 6.978 17 C -0.829 4.829 18 C 0.078 3.922 19 N -0.209 5.209 20 C 0.065 3.935 21 C -0.218 4.218 22 C 0.362 3.638 23 O -0.420 6.420 24 O -0.261 6.261 25 C -0.065 4.065 26 C 0.062 3.938 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.224 0.776 36 H 0.234 0.766 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.165 0.835 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.577 3.818 -12.990 16.027 hybrid contribution -0.072 1.328 2.001 2.403 sum 8.505 5.146 -10.988 14.818 Atomic orbital electron populations 1.24032 0.95365 1.02878 0.98364 1.23390 0.96993 0.98656 1.01702 1.20549 0.93193 0.96513 0.87614 1.57290 1.24276 1.82506 1.17468 1.18801 0.95951 0.93860 0.77716 1.21738 1.44090 0.92771 0.99669 0.91651 1.25631 0.94830 1.02136 0.95438 1.70017 1.44010 1.37258 1.04660 0.85849 0.78313 0.81247 0.77839 1.18414 1.20824 1.20699 1.01538 0.72687 0.73834 0.72685 1.93534 1.86887 1.62845 1.51771 1.93536 1.80630 1.81205 1.42469 1.32068 1.21278 1.26545 1.02969 1.23351 0.86144 0.90287 0.92425 1.68089 1.10494 1.05147 1.37151 1.24071 0.87479 0.95860 0.86137 1.20220 1.07436 0.98353 0.95793 1.20889 0.75787 0.80117 0.87044 1.90898 1.58530 1.72711 1.19892 1.86477 1.63110 1.35183 1.41295 1.23694 0.97797 0.94507 0.90504 1.21404 0.83813 0.88462 1.00151 0.87911 0.86806 0.87456 0.89372 0.87738 0.94987 0.95912 0.92485 0.77551 0.76634 0.92568 0.91503 0.83488 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 14.32 67.78 0.97 -3.33 16 2 C -0.19 -5.50 9.84 25.64 0.25 -5.25 16 3 C 0.15 4.54 5.78 85.63 0.50 5.04 16 4 N -0.98 -38.07 2.75 -523.92 -1.44 -39.51 16 5 C 0.26 12.75 5.43 85.63 0.47 13.21 16 6 C -0.54 -28.13 9.38 25.60 0.24 -27.89 16 7 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 8 C 0.02 1.10 5.46 84.65 0.46 1.56 16 9 N -0.92 -53.32 13.29 21.45 0.28 -53.04 16 10 Si 0.94 43.17 29.54 68.60 2.03 45.20 16 11 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 S 2.70 101.60 5.66 -56.49 -0.32 101.28 16 15 O -0.96 -33.58 16.26 -128.00 -2.08 -35.66 16 16 O -0.99 -45.27 15.90 -128.00 -2.04 -47.30 16 17 C -0.74 -24.79 5.98 22.33 0.13 -24.66 16 18 C 0.24 6.30 10.68 84.71 0.90 7.21 16 19 N -0.50 -12.59 10.35 -194.71 -2.01 -14.61 16 20 C 0.22 5.29 10.79 85.04 0.92 6.21 16 21 C -0.21 -6.63 5.89 -20.00 -0.12 -6.75 16 22 C 0.52 16.42 7.91 70.33 0.56 16.98 16 23 O -0.53 -21.06 16.21 19.93 0.32 -20.73 16 24 O -0.34 -8.04 9.84 -56.19 -0.55 -8.60 16 25 C 0.03 0.48 10.56 113.37 1.20 1.68 16 26 C 0.09 3.24 9.18 22.74 0.21 3.45 16 27 H 0.10 2.52 7.84 -2.91 -0.02 2.50 16 28 H 0.11 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.11 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.09 2.75 7.76 -2.39 -0.02 2.74 16 31 H 0.10 2.58 7.61 -2.38 -0.02 2.57 16 32 H 0.03 1.64 8.11 -2.38 -0.02 1.62 16 33 H 0.02 1.26 6.91 -2.39 -0.02 1.24 16 34 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.21 4.18 7.61 -2.91 -0.02 4.16 16 36 H 0.22 3.30 7.62 -2.91 -0.02 3.28 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.14 5.94 7.38 -2.91 -0.02 5.91 16 Total: -1.00 -72.17 369.84 1.93 -70.24 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.06 Total: 15.27 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 6.69 Total: -12.53 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -3.17 Total: -107.16 kcal Atomic # 8 Polarization: -107.94 SS G_CDS: -4.35 Total: -112.29 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 101.60 SS G_CDS: -0.32 Total: 101.28 kcal Total: -72.17 1.93 -70.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518156235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.408 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds