Wall clock time and date at job start Sat Apr 11 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36979 * 120.00378 * 2 1 4 4 H 1.07998 * 120.00472 * 201.48691 * 3 2 1 5 5 C 1.38978 * 119.99706 * 21.49349 * 3 2 1 6 6 N 1.31414 * 120.00275 * 21.96854 * 5 3 2 7 7 Si 1.86796 * 120.00101 * 201.97416 * 5 3 2 8 8 H 1.48503 * 109.47594 * 94.98774 * 7 5 3 9 9 H 1.48502 * 109.47495 * 214.99149 * 7 5 3 10 10 H 1.48506 * 109.46928 * 334.98921 * 7 5 3 11 11 C 1.34774 * 119.99712 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00085 * 185.06194 * 11 2 1 13 13 C 1.47350 * 120.00174 * 5.06759 * 11 2 1 14 14 C 1.41405 * 126.40946 * 306.91133 * 13 11 2 15 15 N 1.30432 * 108.08439 * 180.02562 * 14 13 11 16 16 N 1.39939 * 108.93506 * 359.97438 * 15 14 13 17 17 C 1.39803 * 125.77560 * 180.02562 * 16 15 14 18 18 C 1.38944 * 119.68822 * 333.67186 * 17 16 15 19 19 C 1.38416 * 119.10390 * 179.79150 * 18 17 16 20 20 C 1.38796 * 118.48637 * 0.48002 * 19 18 17 21 21 C 1.38134 * 119.29071 * 359.74659 * 20 19 18 22 22 N 1.31889 * 120.84366 * 0.02562 * 21 20 19 23 23 C 1.34651 * 108.44717 * 0.02562 * 16 15 14 24 24 C 1.50703 * 126.31667 * 179.97438 * 23 16 15 25 25 F 1.39903 * 109.46950 * 82.75712 * 24 23 16 26 26 F 1.39902 * 109.46694 * 202.75306 * 24 23 16 27 27 F 1.39891 * 109.47585 * 322.75719 * 24 23 16 28 28 H 1.08998 * 109.47100 * 265.38596 * 1 2 3 29 29 H 1.09006 * 109.47182 * 25.37606 * 1 2 3 30 30 H 1.08993 * 109.47560 * 145.38076 * 1 2 3 31 31 H 0.96992 * 120.00181 * 179.97438 * 6 5 3 32 32 H 1.08002 * 125.95671 * 359.75855 * 14 13 11 33 33 H 1.08001 * 120.44586 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.75932 * 180.22118 * 19 18 17 35 35 H 1.07996 * 120.35689 * 179.72321 * 20 19 18 36 36 H 1.08001 * 119.57897 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1499 1.1862 0.0000 4 1 3.1736 1.2187 -0.3426 5 6 1.5275 2.3480 0.4410 6 7 0.4861 2.2732 1.2390 7 14 2.1712 4.0158 -0.1006 8 1 1.4080 4.4795 -1.2871 9 1 2.0079 4.9927 1.0058 10 1 3.6097 3.9011 -0.4513 11 6 2.1388 -1.1672 -0.0005 12 8 3.3516 -1.1694 0.0924 13 6 1.4063 -2.4407 -0.1138 14 6 0.3287 -2.8643 0.6980 15 7 -0.0484 -4.0435 0.2874 16 7 0.7560 -4.4274 -0.7914 17 6 0.6551 -5.6287 -1.4994 18 6 0.1280 -6.7528 -0.8756 19 6 0.0297 -7.9348 -1.5892 20 6 0.4733 -7.9530 -2.9042 21 6 0.9908 -6.7987 -3.4589 22 7 1.0676 -5.6858 -2.7553 23 6 1.6437 -3.4439 -1.0322 24 6 2.7012 -3.4393 -2.1059 25 9 2.1341 -3.0293 -3.3173 26 9 3.7253 -2.5560 -1.7478 27 9 3.2260 -4.7281 -2.2492 28 1 -0.3633 -0.0827 1.0243 29 1 -0.3634 0.9286 -0.4404 30 1 -0.3634 -0.8456 -0.5838 31 1 0.0520 3.0840 1.5470 32 1 -0.1035 -2.3101 1.5180 33 1 -0.2039 -6.7040 0.1510 34 1 -0.3791 -8.8237 -1.1319 35 1 0.4149 -8.8601 -3.4874 36 1 1.3370 -6.8075 -4.4819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523455248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:38 Heat of formation + Delta-G solvation = -26.822856 kcal Electronic energy + Delta-G solvation = -30335.459345 eV Core-core repulsion = 25601.579607 eV Total energy + Delta-G solvation = -4733.879738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.70241 -47.26734 -47.10608 -41.79477 -40.16032 -38.10090 -34.69275 -33.95564 -32.80673 -31.71427 -31.29766 -29.71402 -26.65189 -25.97204 -24.70708 -24.09240 -23.95915 -21.75582 -21.13319 -19.63766 -18.56592 -18.14673 -17.69642 -17.00447 -16.93291 -16.34913 -16.27832 -15.87959 -15.37396 -14.92820 -14.41016 -14.23522 -14.09463 -14.06104 -13.92129 -13.75784 -13.73197 -13.52190 -13.45769 -13.25896 -13.14374 -12.67956 -12.37684 -12.16256 -11.63640 -11.47857 -11.30066 -11.07917 -10.93236 -10.56725 -10.36125 -10.31722 -10.19303 -9.93051 -9.38720 -9.05842 -8.64267 -8.32178 -7.74656 -6.44249 -3.89263 0.34046 0.88818 1.54684 1.79476 2.40536 2.86334 3.15338 3.25119 3.30940 3.42878 3.79449 3.89947 4.04151 4.12431 4.36731 4.45389 4.56181 4.65013 4.73038 4.77697 4.83878 5.01929 5.09529 5.32650 5.38318 5.52752 5.62853 5.79048 5.83640 6.09637 6.24787 6.35670 6.70772 6.74407 7.03515 7.17089 7.52260 7.63162 8.05380 8.41526 9.11048 9.32516 9.90751 10.61740 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.003664 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.616674 B = 7640.078171 C = 8328.193730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.425 5.425 3 C -0.307 4.307 4 H 0.104 0.896 5 C 0.035 3.965 6 N -0.866 5.866 7 Si 0.923 3.077 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.267 1.267 11 C 0.494 3.506 12 O -0.564 6.564 13 C -0.156 4.156 14 C 0.093 3.907 15 N -0.258 5.258 16 N -0.300 5.300 17 C 0.362 3.638 18 C -0.153 4.153 19 C -0.056 4.056 20 C -0.181 4.181 21 C 0.136 3.864 22 N -0.494 5.494 23 C 0.021 3.979 24 C 0.545 3.455 25 F -0.166 7.166 26 F -0.135 7.135 27 F -0.174 7.174 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.270 0.730 32 H 0.211 0.789 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.740 -18.148 -6.236 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.142 5.142 3 C -0.435 4.435 4 H 0.122 0.878 5 C -0.170 4.170 6 N -0.504 5.504 7 Si 0.749 3.251 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.191 1.191 11 C 0.280 3.720 12 O -0.448 6.448 13 C -0.171 4.171 14 C -0.095 4.095 15 N -0.077 5.077 16 N -0.078 5.078 17 C 0.136 3.864 18 C -0.175 4.175 19 C -0.082 4.082 20 C -0.202 4.202 21 C -0.022 4.022 22 N -0.207 5.207 23 C -0.105 4.105 24 C 0.488 3.512 25 F -0.147 7.147 26 F -0.116 7.116 27 F -0.155 7.155 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.227 0.773 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.717 -18.234 -6.357 19.878 hybrid contribution 0.264 0.784 0.011 0.827 sum -4.453 -17.450 -6.346 19.095 Atomic orbital electron populations 1.21556 0.81271 1.00310 1.00660 1.43437 1.05437 1.04348 1.60979 1.19709 0.99640 0.82839 1.41301 0.87818 1.25324 0.96790 1.00132 0.94750 1.70049 1.22321 1.29780 1.28270 0.85955 0.79720 0.81066 0.78311 1.20291 1.20934 1.19076 1.16878 0.87033 0.81626 0.86416 1.90687 1.12879 1.85980 1.55209 1.20869 1.00191 0.98068 0.97927 1.24489 0.93907 0.91887 0.99204 1.77250 1.14643 1.15758 1.00009 1.45077 1.25006 1.12382 1.25343 1.17722 0.96925 0.83318 0.88486 1.21657 1.02156 0.91366 1.02322 1.21523 0.95406 0.97413 0.93856 1.22199 1.01213 1.00297 0.96446 1.22543 0.94046 0.86410 0.99213 1.66968 1.18046 1.30644 1.04994 1.21306 0.96773 0.92280 1.00172 1.16975 0.80282 0.74473 0.79460 1.93224 1.84942 1.90224 1.46291 1.93450 1.59237 1.67699 1.91248 1.93177 1.87445 1.38901 1.95981 0.92602 0.90768 0.95251 0.92020 0.77270 0.83392 0.83718 0.83918 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 7.74 59.84 0.46 2.77 16 2 N -0.42 -10.82 3.01 -123.45 -0.37 -11.19 16 3 C -0.31 -8.43 9.21 -14.98 -0.14 -8.57 16 4 H 0.10 2.99 7.50 -52.49 -0.39 2.60 16 5 C 0.04 0.90 4.82 -17.46 -0.08 0.82 16 6 N -0.87 -22.35 11.25 55.50 0.62 -21.72 16 7 Si 0.92 20.24 29.61 -169.99 -5.03 15.21 16 8 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 11 C 0.49 12.38 6.90 -12.55 -0.09 12.29 16 12 O -0.56 -15.91 14.31 5.24 0.08 -15.83 16 13 C -0.16 -3.24 4.81 -105.05 -0.51 -3.75 16 14 C 0.09 1.61 10.21 -16.94 -0.17 1.43 16 15 N -0.26 -4.29 12.03 30.88 0.37 -3.92 16 16 N -0.30 -5.24 3.73 -8.00 -0.03 -5.27 16 17 C 0.36 5.41 6.91 -154.38 -1.07 4.34 16 18 C -0.15 -1.73 9.73 -39.25 -0.38 -2.12 16 19 C -0.06 -0.44 10.17 -39.31 -0.40 -0.84 16 20 C -0.18 -1.34 10.11 -39.41 -0.40 -1.74 16 21 C 0.14 1.36 11.18 -17.57 -0.20 1.16 16 22 N -0.49 -7.11 7.03 -12.29 -0.09 -7.20 16 23 C 0.02 0.42 6.40 -81.42 -0.52 -0.10 16 24 C 0.54 10.73 2.83 36.01 0.10 10.83 16 25 F -0.17 -3.17 17.04 2.25 0.04 -3.14 16 26 F -0.14 -3.03 13.94 2.25 0.03 -2.99 16 27 F -0.17 -3.12 14.62 2.25 0.03 -3.09 16 28 H 0.06 1.18 7.59 -51.93 -0.39 0.79 16 29 H 0.07 1.70 6.83 -51.93 -0.35 1.34 16 30 H 0.03 0.57 6.39 -51.93 -0.33 0.23 16 31 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.21 3.03 7.63 -52.49 -0.40 2.63 16 33 H 0.15 1.56 7.91 -52.49 -0.42 1.15 16 34 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 325.23 15.07 4.90 4.90 Total: -1.00 -32.88 325.23 -5.53 -38.40 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -2.69 Total: -0.70 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: -3.39 Total: 16.53 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.51 Total: -49.30 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.08 Total: -15.83 kcal Atomic # 9 Polarization: -9.32 SS G_CDS: 0.10 Total: -9.22 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.88 -5.53 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523455248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.581 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds