Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36979 * 120.00378 * 2 1 4 4 H 1.07998 * 120.00472 * 201.48691 * 3 2 1 5 5 C 1.38978 * 119.99706 * 21.49349 * 3 2 1 6 6 N 1.31414 * 120.00275 * 21.96854 * 5 3 2 7 7 Si 1.86796 * 120.00101 * 201.97416 * 5 3 2 8 8 H 1.48503 * 109.47594 * 94.98774 * 7 5 3 9 9 H 1.48502 * 109.47495 * 214.99149 * 7 5 3 10 10 H 1.48506 * 109.46928 * 334.98921 * 7 5 3 11 11 C 1.34774 * 119.99712 * 180.02562 * 2 1 3 12 12 O 1.21639 * 120.00085 * 185.06194 * 11 2 1 13 13 C 1.47350 * 120.00174 * 5.06759 * 11 2 1 14 14 C 1.41405 * 126.40946 * 306.91133 * 13 11 2 15 15 N 1.30432 * 108.08439 * 180.02562 * 14 13 11 16 16 N 1.39939 * 108.93506 * 359.97438 * 15 14 13 17 17 C 1.39803 * 125.77560 * 180.02562 * 16 15 14 18 18 C 1.38944 * 119.68822 * 333.67186 * 17 16 15 19 19 C 1.38416 * 119.10390 * 179.79150 * 18 17 16 20 20 C 1.38796 * 118.48637 * 0.48002 * 19 18 17 21 21 C 1.38134 * 119.29071 * 359.74659 * 20 19 18 22 22 N 1.31889 * 120.84366 * 0.02562 * 21 20 19 23 23 C 1.34651 * 108.44717 * 0.02562 * 16 15 14 24 24 C 1.50703 * 126.31667 * 179.97438 * 23 16 15 25 25 F 1.39903 * 109.46950 * 82.75712 * 24 23 16 26 26 F 1.39902 * 109.46694 * 202.75306 * 24 23 16 27 27 F 1.39891 * 109.47585 * 322.75719 * 24 23 16 28 28 H 1.08998 * 109.47100 * 265.38596 * 1 2 3 29 29 H 1.09006 * 109.47182 * 25.37606 * 1 2 3 30 30 H 1.08993 * 109.47560 * 145.38076 * 1 2 3 31 31 H 0.96992 * 120.00181 * 179.97438 * 6 5 3 32 32 H 1.08002 * 125.95671 * 359.75855 * 14 13 11 33 33 H 1.08001 * 120.44586 * 0.02562 * 18 17 16 34 34 H 1.07999 * 120.75932 * 180.22118 * 19 18 17 35 35 H 1.07996 * 120.35689 * 179.72321 * 20 19 18 36 36 H 1.08001 * 119.57897 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1499 1.1862 0.0000 4 1 3.1736 1.2187 -0.3426 5 6 1.5275 2.3480 0.4410 6 7 0.4861 2.2732 1.2390 7 14 2.1712 4.0158 -0.1006 8 1 1.4080 4.4795 -1.2871 9 1 2.0079 4.9927 1.0058 10 1 3.6097 3.9011 -0.4513 11 6 2.1388 -1.1672 -0.0005 12 8 3.3516 -1.1694 0.0924 13 6 1.4063 -2.4407 -0.1138 14 6 0.3287 -2.8643 0.6980 15 7 -0.0484 -4.0435 0.2874 16 7 0.7560 -4.4274 -0.7914 17 6 0.6551 -5.6287 -1.4994 18 6 0.1280 -6.7528 -0.8756 19 6 0.0297 -7.9348 -1.5892 20 6 0.4733 -7.9530 -2.9042 21 6 0.9908 -6.7987 -3.4589 22 7 1.0676 -5.6858 -2.7553 23 6 1.6437 -3.4439 -1.0322 24 6 2.7012 -3.4393 -2.1059 25 9 2.1341 -3.0293 -3.3173 26 9 3.7253 -2.5560 -1.7478 27 9 3.2260 -4.7281 -2.2492 28 1 -0.3633 -0.0827 1.0243 29 1 -0.3634 0.9286 -0.4404 30 1 -0.3634 -0.8456 -0.5838 31 1 0.0520 3.0840 1.5470 32 1 -0.1035 -2.3101 1.5180 33 1 -0.2039 -6.7040 0.1510 34 1 -0.3791 -8.8237 -1.1319 35 1 0.4149 -8.8601 -3.4874 36 1 1.3370 -6.8075 -4.4819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523455248.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = -46.953601 kcal Electronic energy + Delta-G solvation = -30336.332280 eV Core-core repulsion = 25601.579607 eV Total energy + Delta-G solvation = -4734.752673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.27720 -48.79114 -48.74964 -43.11161 -41.10558 -39.95301 -36.67208 -35.07622 -33.77677 -33.54065 -32.68906 -30.83435 -28.40696 -27.63466 -26.45813 -25.16018 -24.94571 -23.22969 -22.34674 -21.19247 -20.01496 -19.70749 -19.29338 -18.89859 -18.10060 -17.73561 -17.35423 -17.10971 -16.73299 -16.44632 -16.00309 -15.78749 -15.59705 -15.49204 -15.42795 -15.22842 -15.16568 -14.93794 -14.89341 -14.68070 -14.48387 -14.11435 -13.84561 -13.43659 -13.28043 -13.10403 -13.05806 -12.65194 -12.52648 -12.40822 -12.11397 -11.63155 -11.03155 -11.00603 -10.79287 -10.75348 -10.46006 -9.72302 -9.55937 -8.41734 -5.96238 -0.75347 0.14598 0.37743 0.54688 0.97244 1.39486 1.40977 1.44866 1.56943 2.00261 2.27647 2.36167 2.58268 2.83133 2.87823 3.05397 3.17887 3.28844 3.42571 3.77993 3.87254 3.95350 3.98103 4.08181 4.23908 4.29826 4.56048 4.66194 4.86540 4.93379 5.02186 5.12917 5.24447 5.28146 5.46688 5.69426 5.90222 6.05055 6.43832 6.72253 7.11756 7.36764 7.96155 8.63582 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.022188 B = 0.003664 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.616674 B = 7640.078171 C = 8328.193730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.437 5.437 3 C -0.349 4.349 4 H 0.075 0.925 5 C 0.009 3.991 6 N -0.878 5.878 7 Si 0.986 3.014 8 H -0.265 1.265 9 H -0.272 1.272 10 H -0.275 1.275 11 C 0.492 3.508 12 O -0.609 6.609 13 C -0.187 4.187 14 C 0.098 3.902 15 N -0.245 5.245 16 N -0.289 5.289 17 C 0.306 3.694 18 C -0.151 4.151 19 C -0.047 4.047 20 C -0.151 4.151 21 C 0.119 3.881 22 N -0.530 5.530 23 C 0.017 3.983 24 C 0.546 3.454 25 F -0.165 7.165 26 F -0.156 7.156 27 F -0.163 7.163 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.278 0.722 32 H 0.234 0.766 33 H 0.152 0.848 34 H 0.188 0.812 35 H 0.189 0.811 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.594 -20.714 -6.933 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.154 5.154 3 C -0.476 4.476 4 H 0.092 0.908 5 C -0.196 4.196 6 N -0.515 5.515 7 Si 0.809 3.191 8 H -0.190 1.190 9 H -0.197 1.197 10 H -0.200 1.200 11 C 0.279 3.721 12 O -0.495 6.495 13 C -0.203 4.203 14 C -0.089 4.089 15 N -0.064 5.064 16 N -0.066 5.066 17 C 0.083 3.917 18 C -0.174 4.174 19 C -0.073 4.073 20 C -0.171 4.171 21 C -0.039 4.039 22 N -0.243 5.243 23 C -0.112 4.112 24 C 0.490 3.510 25 F -0.146 7.146 26 F -0.138 7.138 27 F -0.144 7.144 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.250 0.750 33 H 0.169 0.831 34 H 0.205 0.795 35 H 0.206 0.794 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.631 -20.839 -7.053 22.977 hybrid contribution 0.809 1.284 0.099 1.520 sum -5.822 -19.555 -6.954 21.556 Atomic orbital electron populations 1.21508 0.79311 1.00471 1.01218 1.43638 1.06722 1.04080 1.60948 1.19618 0.99411 0.84694 1.43923 0.90751 1.26028 0.96897 1.02661 0.93989 1.70075 1.22546 1.31079 1.27791 0.85039 0.78659 0.76931 0.78457 1.18978 1.19679 1.20007 1.17385 0.86779 0.82842 0.85054 1.90630 1.14981 1.87040 1.56894 1.20451 1.02358 0.96950 1.00496 1.24709 0.92845 0.92000 0.99307 1.77217 1.14196 1.15163 0.99857 1.45381 1.23626 1.12591 1.24954 1.18117 1.00878 0.83196 0.89542 1.21884 1.01258 0.91451 1.02758 1.22065 0.94097 0.97292 0.93867 1.22732 0.97399 1.00676 0.96260 1.23177 0.94262 0.86296 1.00126 1.66858 1.18993 1.33097 1.05364 1.21242 0.97092 0.92918 0.99949 1.16970 0.79990 0.74448 0.79636 1.93213 1.84851 1.90293 1.46232 1.93407 1.60272 1.68599 1.91489 1.93184 1.87321 1.37940 1.95940 0.92049 0.92146 0.93008 0.91216 0.75017 0.83065 0.79488 0.79364 0.79203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.23 7.74 127.77 0.99 6.22 16 2 N -0.44 -23.17 3.01 -662.72 -1.99 -25.16 16 3 C -0.35 -20.01 9.21 84.07 0.77 -19.24 16 4 H 0.07 4.60 7.50 -2.91 -0.02 4.57 16 5 C 0.01 0.45 4.82 84.93 0.41 0.86 16 6 N -0.88 -45.33 11.25 21.67 0.24 -45.08 16 7 Si 0.99 41.92 29.61 68.60 2.03 43.95 16 8 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 C 0.49 25.87 6.90 86.64 0.60 26.46 16 12 O -0.61 -36.52 14.31 -4.15 -0.06 -36.58 16 13 C -0.19 -8.04 4.81 -20.14 -0.10 -8.13 16 14 C 0.10 3.38 10.21 85.68 0.87 4.26 16 15 N -0.25 -8.00 12.03 -56.20 -0.68 -8.67 16 16 N -0.29 -10.04 3.73 -179.23 -0.67 -10.71 16 17 C 0.31 8.82 6.91 132.77 0.92 9.74 16 18 C -0.15 -3.05 9.73 22.48 0.22 -2.84 16 19 C -0.05 -0.53 10.17 22.45 0.23 -0.30 16 20 C -0.15 -1.48 10.11 22.38 0.23 -1.25 16 21 C 0.12 2.02 11.18 84.66 0.95 2.97 16 22 N -0.53 -14.61 7.03 -192.80 -1.36 -15.97 16 23 C 0.02 0.69 6.40 42.09 0.27 0.96 16 24 C 0.55 22.28 2.83 71.24 0.20 22.48 16 25 F -0.16 -6.51 17.04 44.97 0.77 -5.75 16 26 F -0.16 -7.42 13.94 44.97 0.63 -6.79 16 27 F -0.16 -5.95 14.62 44.97 0.66 -5.29 16 28 H 0.06 2.61 7.59 -2.39 -0.02 2.59 16 29 H 0.06 2.80 6.83 -2.38 -0.02 2.79 16 30 H 0.05 2.02 6.39 -2.39 -0.02 2.01 16 31 H 0.28 13.29 8.31 -92.71 -0.77 12.52 16 32 H 0.23 6.57 7.63 -2.91 -0.02 6.55 16 33 H 0.15 2.85 7.91 -2.91 -0.02 2.83 16 34 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 35 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 36 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -76.18 325.23 7.29 -68.89 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.16 Total: 4.98 kcal Atomic # 6 Polarization: 35.63 SS G_CDS: 6.56 Total: 42.19 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -4.45 Total: -105.59 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.06 Total: -36.58 kcal Atomic # 9 Polarization: -19.88 SS G_CDS: 2.05 Total: -17.83 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -76.18 7.29 -68.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523455248.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.933 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds