Wall clock time and date at job start Sat Apr 11 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47167 * 2 1 4 4 C 1.46495 * 120.00292 * 274.94659 * 3 2 1 5 5 C 1.50704 * 109.47048 * 263.11192 * 4 3 2 6 6 H 1.08002 * 119.99950 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99934 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00089 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99824 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46636 * 120.00462 * 9 7 5 12 12 H 1.48501 * 109.47038 * 239.99868 * 9 7 5 13 13 C 1.34778 * 119.99570 * 94.94377 * 3 2 1 14 14 O 1.21371 * 119.99921 * 3.68611 * 13 3 2 15 15 C 1.49267 * 119.99920 * 183.68474 * 13 3 2 16 16 O 1.21419 * 119.99899 * 354.26654 * 15 13 3 17 17 N 1.34769 * 120.00070 * 174.26419 * 15 13 3 18 18 C 1.39365 * 120.00206 * 180.02562 * 17 15 13 19 19 C 1.33621 * 124.75205 * 180.02562 * 18 17 15 20 20 C 1.44454 * 112.91613 * 180.02562 * 19 18 17 21 21 C 1.47029 * 123.44169 * 179.97438 * 20 19 18 22 22 O 1.21562 * 120.00142 * 0.02562 * 21 20 19 23 23 O 1.34807 * 119.99827 * 180.02562 * 21 20 19 24 24 C 1.45199 * 116.99778 * 179.97438 * 23 21 20 25 25 C 1.36088 * 113.11379 * 359.97438 * 20 19 18 26 26 S 1.70413 * 110.95902 * 0.26822 * 25 20 19 27 27 H 1.09003 * 109.47120 * 60.00025 * 1 2 3 28 28 H 1.09004 * 109.47210 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47367 * 299.99779 * 1 2 3 30 30 H 1.09004 * 109.47120 * 240.00163 * 2 1 3 31 31 H 1.08998 * 109.47114 * 120.00479 * 2 1 3 32 32 H 1.09004 * 109.46860 * 23.11023 * 4 3 2 33 33 H 1.08995 * 109.47442 * 143.10963 * 4 3 2 34 34 H 0.96999 * 120.00048 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00317 * 359.97438 * 17 15 13 36 36 H 1.08005 * 123.53918 * 0.02562 * 19 18 17 37 37 H 1.08998 * 109.46951 * 180.02562 * 24 23 21 38 38 H 1.08997 * 109.47167 * 300.00520 * 24 23 21 39 39 H 1.09001 * 109.47149 * 60.00263 * 24 23 21 40 40 H 1.08005 * 124.51780 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1594 2.1083 -1.2639 5 6 3.5888 2.0259 -1.7341 6 1 4.3192 1.4862 -1.1495 7 6 3.9641 2.6394 -2.9104 8 7 3.0748 3.2970 -3.6219 9 14 5.7361 2.5378 -3.4927 10 1 6.5322 1.7470 -2.5201 11 1 5.7830 1.8783 -4.8225 12 1 6.3015 3.9068 -3.5990 13 6 2.3378 1.9829 1.1629 14 8 2.2848 1.3599 2.2032 15 6 2.7566 3.4156 1.1715 16 8 2.9103 4.0095 0.1236 17 7 2.9642 4.0500 2.3423 18 6 3.3548 5.3878 2.3503 19 6 3.5863 6.1070 3.4524 20 6 3.9771 7.4675 3.1644 21 6 4.2863 8.4593 4.2048 22 8 4.2195 8.1500 5.3785 23 8 4.6439 9.7117 3.8572 24 6 4.9342 10.6381 4.9369 25 6 4.0298 7.7374 1.8315 26 16 3.6045 6.3655 0.9145 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5042 1.6644 -2.0135 33 1 1.8856 3.1527 -1.1148 34 1 3.3389 3.7289 -4.4493 35 1 2.8411 3.5757 3.1794 36 1 3.4913 5.7126 4.4533 37 1 5.2076 11.6075 4.5203 38 1 4.0518 10.7496 5.5671 39 1 5.7606 10.2526 5.5340 40 1 4.3010 8.6947 1.4112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525857498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:40 Heat of formation + Delta-G solvation = -120.509052 kcal Electronic energy + Delta-G solvation = -26893.731488 eV Core-core repulsion = 22800.797152 eV Total energy + Delta-G solvation = -4092.934336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03846 -41.42360 -39.91963 -38.56250 -37.47929 -37.21010 -35.53249 -34.66572 -32.05351 -30.61171 -29.04849 -28.56494 -26.59048 -25.84628 -24.99331 -23.69768 -22.67282 -21.56995 -20.29500 -19.20828 -18.83007 -18.59336 -18.34600 -17.79185 -17.38636 -17.32258 -17.01056 -16.70274 -16.36052 -16.05234 -15.64127 -15.13048 -14.82160 -14.54050 -14.49605 -14.30448 -14.00113 -13.85886 -13.77959 -13.61216 -13.42410 -13.12940 -12.98322 -12.78557 -12.68463 -12.36797 -12.17840 -12.05682 -12.00274 -11.80814 -11.78819 -11.63459 -11.43310 -10.66485 -10.21875 -9.64628 -9.58961 -9.21463 -8.11979 -6.20901 -0.38155 0.16276 0.22147 0.85588 0.89787 1.21556 1.40740 1.44080 1.52983 1.80218 1.96872 2.19229 2.41722 2.58316 3.21756 3.32003 3.90794 3.97691 4.15612 4.23722 4.31761 4.35008 4.35385 4.46217 4.52276 4.67248 4.72192 4.77005 4.92233 4.96515 5.03343 5.13242 5.26807 5.27508 5.43917 5.53617 5.78101 5.87879 6.13189 6.28379 6.59758 6.67370 6.81511 6.97565 7.45757 8.95965 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.003388 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.292959 B = 8262.261121 C = 9931.596969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.561 5.561 4 C 0.238 3.762 5 C -0.525 4.525 6 H 0.043 0.957 7 C 0.028 3.972 8 N -0.915 5.915 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.511 3.489 14 O -0.559 6.559 15 C 0.484 3.516 16 O -0.457 6.457 17 N -0.607 5.607 18 C 0.003 3.997 19 C -0.133 4.133 20 C -0.152 4.152 21 C 0.535 3.465 22 O -0.537 6.537 23 O -0.357 6.357 24 C 0.029 3.971 25 C -0.214 4.214 26 S 0.310 5.690 27 H 0.052 0.948 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.264 0.736 35 H 0.434 0.566 36 H 0.165 0.835 37 H 0.135 0.865 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 8.774 11.393 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.020 4.020 3 N -0.291 5.291 4 C 0.118 3.882 5 C -0.564 4.564 6 H 0.061 0.939 7 C -0.172 4.172 8 N -0.554 5.554 9 Si 0.771 3.229 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.205 1.205 13 C 0.293 3.707 14 O -0.440 6.440 15 C 0.266 3.734 16 O -0.329 6.329 17 N -0.256 5.256 18 C -0.209 4.209 19 C -0.165 4.165 20 C -0.168 4.168 21 C 0.380 3.620 22 O -0.429 6.429 23 O -0.273 6.273 24 C -0.064 4.064 25 C -0.353 4.353 26 S 0.574 5.426 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.275 0.725 36 H 0.182 0.818 37 H 0.153 0.847 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.541 8.515 9.744 12.952 hybrid contribution 1.033 0.113 1.634 1.936 sum 0.493 8.628 11.378 14.288 Atomic orbital electron populations 1.22041 0.93903 1.03635 1.01646 1.21716 0.95726 0.80954 1.03627 1.48306 1.58864 1.14704 1.07205 1.19674 0.96298 0.93388 0.78851 1.21401 0.94992 1.33274 1.06697 0.93868 1.25439 1.00519 0.94623 0.96601 1.70005 1.35095 1.34942 1.15405 0.85712 0.81080 0.77901 0.78177 1.19953 1.20244 1.20500 1.19493 0.79665 0.86977 0.84572 1.90668 1.55581 1.65920 1.31839 1.20664 0.79774 0.89190 0.83764 1.90863 1.45745 1.66215 1.30053 1.42447 1.64989 1.07857 1.10260 1.21996 1.09550 0.89354 1.00016 1.20682 1.05676 0.91460 0.98649 1.18831 1.13258 0.93106 0.91650 1.20496 0.72676 0.81669 0.87194 1.90821 1.50806 1.80398 1.20829 1.86552 1.78608 1.21153 1.40977 1.23602 1.01630 0.91933 0.89199 1.26756 1.03107 1.07657 0.97768 1.85098 1.60315 0.95471 1.01733 0.92918 0.88718 0.93159 0.89733 0.89703 0.95962 0.92378 0.92664 0.72480 0.81793 0.84708 0.91746 0.91836 0.78025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 10.24 71.98 0.74 -3.43 16 2 C 0.10 3.33 6.18 86.38 0.53 3.86 16 3 N -0.56 -22.66 2.48 -827.96 -2.05 -24.71 16 4 C 0.24 11.35 4.79 85.64 0.41 11.76 16 5 C -0.52 -27.55 8.31 25.60 0.21 -27.34 16 6 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 7 C 0.03 1.51 5.46 84.65 0.46 1.98 16 8 N -0.91 -50.87 13.29 21.45 0.28 -50.59 16 9 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.51 20.10 7.66 87.21 0.67 20.77 16 14 O -0.56 -21.68 15.97 -3.31 -0.05 -21.73 16 15 C 0.48 18.43 7.72 87.21 0.67 19.10 16 16 O -0.46 -19.89 9.83 -3.46 -0.03 -19.93 16 17 N -0.61 -18.69 5.41 -308.57 -1.67 -20.36 16 18 C 0.00 0.10 7.10 82.45 0.59 0.69 16 19 C -0.13 -3.56 10.11 22.81 0.23 -3.33 16 20 C -0.15 -3.97 5.98 -19.89 -0.12 -4.09 16 21 C 0.53 13.98 7.92 70.13 0.56 14.53 16 22 O -0.54 -16.36 16.59 19.63 0.33 -16.03 16 23 O -0.36 -7.55 10.21 -57.19 -0.58 -8.13 16 24 C 0.03 0.41 10.57 113.37 1.20 1.61 16 25 C -0.21 -5.07 10.54 67.32 0.71 -4.36 16 26 S 0.31 9.19 20.05 -56.49 -1.13 8.06 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 2.75 8.11 -2.38 -0.02 2.73 16 31 H 0.08 2.69 7.24 -2.39 -0.02 2.67 16 32 H 0.02 1.11 8.02 -2.38 -0.02 1.09 16 33 H 0.06 3.01 5.41 -2.40 -0.01 2.99 16 34 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 35 H 0.43 11.38 8.28 -92.71 -0.77 10.62 16 36 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 37 H 0.13 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.20 3.63 8.01 -2.91 -0.02 3.61 16 Total: -1.00 -65.41 365.35 4.30 -61.11 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.33 Total: 15.90 kcal Atomic # 6 Polarization: 24.89 SS G_CDS: 6.86 Total: 31.75 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -3.43 Total: -95.66 kcal Atomic # 8 Polarization: -65.48 SS G_CDS: -0.35 Total: -65.83 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 9.19 SS G_CDS: -1.13 Total: 8.06 kcal Total: -65.41 4.30 -61.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525857498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.402 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds