Wall clock time and date at job start Sat Apr 11 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47238 * 2 1 4 4 H 1.08999 * 109.47375 * 303.65169 * 3 2 1 5 5 C 1.50694 * 109.47262 * 183.64486 * 3 2 1 6 6 H 1.08000 * 119.99998 * 240.00170 * 5 3 2 7 7 C 1.37874 * 120.00032 * 60.00474 * 5 3 2 8 8 N 1.31517 * 119.99908 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00099 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47227 * 89.99750 * 9 7 5 11 11 H 1.48502 * 109.47110 * 209.99629 * 9 7 5 12 12 H 1.48493 * 109.47465 * 329.99846 * 9 7 5 13 13 N 1.46507 * 109.46997 * 63.64376 * 3 2 1 14 14 S 1.65591 * 120.00464 * 215.75588 * 13 3 2 15 15 O 1.42098 * 106.40735 * 177.92503 * 14 13 3 16 16 O 1.42097 * 106.40422 * 310.84593 * 14 13 3 17 17 C 1.76209 * 107.21641 * 64.38521 * 14 13 3 18 18 C 1.38277 * 119.89939 * 84.52324 * 17 14 13 19 19 C 1.38315 * 120.25633 * 179.97438 * 18 17 14 20 20 C 1.38388 * 119.87801 * 0.02713 * 19 18 17 21 21 C 1.39404 * 119.86288 * 0.02562 * 20 19 18 22 22 C 1.38287 * 119.89669 * 264.25356 * 17 14 13 23 23 N 1.40218 * 119.27616 * 179.97438 * 21 20 19 24 24 C 1.35086 * 118.98745 * 15.45676 * 23 21 20 25 25 O 1.21288 * 120.13801 * 181.72771 * 24 23 21 26 26 C 1.50758 * 119.72626 * 1.70550 * 24 23 21 27 27 O 1.35982 * 120.67167 * 180.02562 * 20 19 18 28 28 H 1.09002 * 109.47262 * 184.55704 * 1 2 3 29 29 H 1.09004 * 109.46742 * 304.55522 * 1 2 3 30 30 H 1.08998 * 109.47219 * 64.55242 * 1 2 3 31 31 H 1.09004 * 109.46739 * 239.99909 * 2 1 3 32 32 H 1.09002 * 109.46951 * 120.00773 * 2 1 3 33 33 H 0.96998 * 120.00351 * 180.02562 * 8 7 5 34 34 H 0.97004 * 119.99789 * 35.76387 * 13 3 2 35 35 H 1.07998 * 119.86936 * 0.02562 * 18 17 14 36 36 H 1.07997 * 120.05741 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.09602 * 359.97369 * 22 17 14 38 38 H 0.97001 * 120.50111 * 195.43640 * 23 21 20 39 39 H 1.09001 * 109.43922 * 208.61543 * 26 24 23 40 40 H 1.08997 * 109.41431 * 88.70729 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6243 1.9749 -0.8554 5 6 3.5443 1.4434 -0.0903 6 1 4.1321 1.8941 0.6956 7 6 4.1701 0.8690 -1.1763 8 7 3.4542 0.3197 -2.1331 9 14 6.0347 0.8695 -1.2879 10 1 6.5695 -0.3576 -0.6449 11 1 6.4452 0.8997 -2.7148 12 1 6.5719 2.0668 -0.5929 13 7 1.6247 2.1073 1.2377 14 16 1.2101 3.7103 1.2177 15 8 0.8137 4.0389 2.5421 16 8 2.2530 4.3859 0.5285 17 6 -0.2304 3.8640 0.2146 18 6 -1.4800 3.6456 0.7648 19 6 -2.6157 3.7647 -0.0157 20 6 -2.5010 4.1034 -1.3526 21 6 -1.2410 4.3225 -1.9075 22 6 -0.1080 4.2082 -1.1192 23 7 -1.1391 4.6645 -3.2636 24 6 -2.2449 5.0797 -3.9190 25 8 -2.1872 5.3507 -5.0998 26 6 -3.5512 5.2043 -3.1767 27 8 -3.6067 4.2254 -2.1347 28 1 -0.3634 -1.0244 0.0817 29 1 -0.3633 0.5829 0.8464 30 1 -0.3633 0.4416 -0.9279 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.8944 -0.0847 -2.8970 34 1 1.5926 1.6084 2.0690 35 1 -1.5696 3.3817 1.8082 36 1 -3.5901 3.5930 0.4172 37 1 0.8686 4.3831 -1.5460 38 1 -0.2873 4.6040 -3.7238 39 1 -4.3782 5.0443 -3.8685 40 1 -3.6282 6.2016 -2.7438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547278651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:59 Heat of formation + Delta-G solvation = -116.716558 kcal Electronic energy + Delta-G solvation = -28245.758914 eV Core-core repulsion = 24152.989033 eV Total energy + Delta-G solvation = -4092.769881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68210 -39.07844 -37.79778 -36.74045 -36.00845 -35.35486 -35.28462 -32.22896 -31.08537 -30.67271 -30.10263 -28.12468 -26.68457 -24.12967 -23.27145 -23.06076 -20.67342 -20.24747 -19.28031 -18.85062 -18.10495 -17.38970 -17.04140 -16.73929 -16.35835 -16.17034 -15.56443 -15.29159 -14.86152 -14.82064 -14.44250 -14.12652 -13.72765 -13.60921 -13.50980 -13.19734 -13.07420 -12.93730 -11.96355 -11.87554 -11.70681 -11.64821 -11.53016 -11.38374 -11.25954 -11.14584 -10.99086 -10.82422 -10.77977 -10.35085 -10.23862 -9.90595 -9.86790 -9.74411 -9.06969 -8.48126 -8.35158 -8.25874 -6.11888 -4.18438 0.51880 0.92813 1.01299 1.97466 2.46381 2.92219 3.22992 3.27692 3.35023 3.41149 3.65636 3.74407 4.24660 4.31728 4.39730 4.53870 4.69562 4.77215 4.99354 5.10154 5.17210 5.23010 5.49749 5.57136 5.77778 5.98961 6.03920 6.10804 6.21640 6.24499 6.30489 6.43072 6.52097 6.72413 6.87500 6.95324 7.03871 7.50491 7.51397 7.59229 7.82945 8.02764 8.18757 8.85215 9.48228 10.92445 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.004368 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.164891 B = 6408.880095 C = 7381.600295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.281 3.719 4 H 0.041 0.959 5 C -0.521 4.521 6 H 0.065 0.935 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.271 1.271 13 N -1.098 6.098 14 S 2.691 3.309 15 O -0.981 6.981 16 O -0.945 6.945 17 C -0.661 4.661 18 C -0.007 4.007 19 C -0.132 4.132 20 C 0.125 3.875 21 C 0.069 3.931 22 C -0.013 4.013 23 N -0.655 5.655 24 C 0.490 3.510 25 O -0.513 6.513 26 C 0.050 3.950 27 O -0.300 6.300 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.407 0.593 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.422 0.578 39 H 0.147 0.853 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.060 5.846 2.542 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.177 3.823 4 H 0.058 0.942 5 C -0.560 4.560 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.860 5.860 14 S 2.777 3.223 15 O -0.971 6.971 16 O -0.935 6.935 17 C -0.746 4.746 18 C -0.027 4.027 19 C -0.151 4.151 20 C 0.078 3.922 21 C -0.027 4.027 22 C -0.034 4.034 23 N -0.303 5.303 24 C 0.277 3.723 25 O -0.388 6.388 26 C -0.028 4.028 27 O -0.214 6.214 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.174 0.826 38 H 0.262 0.738 39 H 0.165 0.835 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.963 6.633 1.943 15.580 hybrid contribution 0.919 -0.521 -0.680 1.257 sum -13.043 6.112 1.263 14.460 Atomic orbital electron populations 1.21843 0.98994 0.99546 1.00211 1.21887 0.91914 0.99399 1.03475 1.18556 0.94564 0.90053 0.79101 0.94159 1.21523 0.91084 1.37025 1.06364 0.91668 1.24888 0.98583 0.94942 0.95374 1.69833 1.35227 1.38290 1.09874 0.86519 0.85297 0.78551 0.77270 1.20666 1.21209 1.19617 1.55522 1.81996 1.29719 1.18715 1.02001 0.73601 0.73708 0.72962 1.93529 1.84105 1.83513 1.35966 1.93609 1.52006 1.72710 1.75158 1.31258 1.19293 1.15189 1.08809 1.20750 0.89869 0.92166 0.99923 1.20579 1.00325 1.04591 0.89632 1.18801 0.83619 0.98741 0.91058 1.18021 0.94199 1.06080 0.84385 1.20510 0.98147 0.93401 0.91350 1.43728 1.13183 1.64370 1.08998 1.21468 0.86405 0.76601 0.87856 1.90821 1.85311 1.47935 1.14696 1.23262 0.96353 0.94004 0.89167 1.86268 1.35621 1.56224 1.43298 0.94485 0.94170 0.93903 0.87635 0.93883 0.92695 0.75904 0.83316 0.83549 0.82611 0.73754 0.83497 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.85 37.16 0.37 -2.16 16 2 C -0.13 -2.61 5.37 -26.73 -0.14 -2.75 16 3 C 0.28 6.13 2.17 -69.08 -0.15 5.98 16 4 H 0.04 0.93 7.55 -51.93 -0.39 0.54 16 5 C -0.52 -13.24 8.84 -34.44 -0.30 -13.55 16 6 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -23.49 11.30 55.43 0.63 -22.87 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 N -1.10 -19.93 4.77 -5.88 -0.03 -19.95 16 14 S 2.69 47.28 5.64 -107.50 -0.61 46.67 16 15 O -0.98 -17.74 17.42 -57.18 -1.00 -18.74 16 16 O -0.94 -20.00 16.92 -57.18 -0.97 -20.96 16 17 C -0.66 -9.87 5.77 -39.55 -0.23 -10.10 16 18 C -0.01 -0.09 9.51 -39.54 -0.38 -0.46 16 19 C -0.13 -1.46 10.00 -39.50 -0.39 -1.85 16 20 C 0.12 1.53 6.44 -39.09 -0.25 1.28 16 21 C 0.07 0.93 6.54 -83.49 -0.55 0.38 16 22 C -0.01 -0.19 9.16 -39.47 -0.36 -0.55 16 23 N -0.65 -8.29 5.47 -9.66 -0.05 -8.34 16 24 C 0.49 6.02 7.94 -10.82 -0.09 5.93 16 25 O -0.51 -7.74 17.95 5.55 0.10 -7.64 16 26 C 0.05 0.44 7.17 36.03 0.26 0.70 16 27 O -0.30 -3.27 10.46 -19.68 -0.21 -3.47 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.60 7.58 -51.93 -0.39 0.20 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 2.49 5.98 -51.93 -0.31 2.18 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.26 6.68 8.31 -40.82 -0.34 6.35 16 34 H 0.41 6.43 8.85 -34.46 -0.30 6.13 16 35 H 0.15 1.54 7.73 -52.49 -0.41 1.13 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.16 2.36 7.50 -52.49 -0.39 1.97 16 38 H 0.42 5.05 8.89 -40.82 -0.36 4.69 16 39 H 0.15 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -32.35 353.80 -8.78 -41.13 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.64 Total: 8.83 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.31 Total: -15.59 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.55 Total: -51.16 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -2.07 Total: -50.82 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.61 Total: 46.67 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.35 -8.78 -41.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547278651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.591 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds