Wall clock time and date at job start Sat Apr 11 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47238 * 2 1 4 4 H 1.08999 * 109.47375 * 303.65169 * 3 2 1 5 5 C 1.50694 * 109.47262 * 183.64486 * 3 2 1 6 6 H 1.08000 * 119.99998 * 240.00170 * 5 3 2 7 7 C 1.37874 * 120.00032 * 60.00474 * 5 3 2 8 8 N 1.31517 * 119.99908 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00099 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47227 * 89.99750 * 9 7 5 11 11 H 1.48502 * 109.47110 * 209.99629 * 9 7 5 12 12 H 1.48493 * 109.47465 * 329.99846 * 9 7 5 13 13 N 1.46507 * 109.46997 * 63.64376 * 3 2 1 14 14 S 1.65591 * 120.00464 * 215.75588 * 13 3 2 15 15 O 1.42098 * 106.40735 * 177.92503 * 14 13 3 16 16 O 1.42097 * 106.40422 * 310.84593 * 14 13 3 17 17 C 1.76209 * 107.21641 * 64.38521 * 14 13 3 18 18 C 1.38277 * 119.89939 * 84.52324 * 17 14 13 19 19 C 1.38315 * 120.25633 * 179.97438 * 18 17 14 20 20 C 1.38388 * 119.87801 * 0.02713 * 19 18 17 21 21 C 1.39404 * 119.86288 * 0.02562 * 20 19 18 22 22 C 1.38287 * 119.89669 * 264.25356 * 17 14 13 23 23 N 1.40218 * 119.27616 * 179.97438 * 21 20 19 24 24 C 1.35086 * 118.98745 * 15.45676 * 23 21 20 25 25 O 1.21288 * 120.13801 * 181.72771 * 24 23 21 26 26 C 1.50758 * 119.72626 * 1.70550 * 24 23 21 27 27 O 1.35982 * 120.67167 * 180.02562 * 20 19 18 28 28 H 1.09002 * 109.47262 * 184.55704 * 1 2 3 29 29 H 1.09004 * 109.46742 * 304.55522 * 1 2 3 30 30 H 1.08998 * 109.47219 * 64.55242 * 1 2 3 31 31 H 1.09004 * 109.46739 * 239.99909 * 2 1 3 32 32 H 1.09002 * 109.46951 * 120.00773 * 2 1 3 33 33 H 0.96998 * 120.00351 * 180.02562 * 8 7 5 34 34 H 0.97004 * 119.99789 * 35.76387 * 13 3 2 35 35 H 1.07998 * 119.86936 * 0.02562 * 18 17 14 36 36 H 1.07997 * 120.05741 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.09602 * 359.97369 * 22 17 14 38 38 H 0.97001 * 120.50111 * 195.43640 * 23 21 20 39 39 H 1.09001 * 109.43922 * 208.61543 * 26 24 23 40 40 H 1.08997 * 109.41431 * 88.70729 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6243 1.9749 -0.8554 5 6 3.5443 1.4434 -0.0903 6 1 4.1321 1.8941 0.6956 7 6 4.1701 0.8690 -1.1763 8 7 3.4542 0.3197 -2.1331 9 14 6.0347 0.8695 -1.2879 10 1 6.5695 -0.3576 -0.6449 11 1 6.4452 0.8997 -2.7148 12 1 6.5719 2.0668 -0.5929 13 7 1.6247 2.1073 1.2377 14 16 1.2101 3.7103 1.2177 15 8 0.8137 4.0389 2.5421 16 8 2.2530 4.3859 0.5285 17 6 -0.2304 3.8640 0.2146 18 6 -1.4800 3.6456 0.7648 19 6 -2.6157 3.7647 -0.0157 20 6 -2.5010 4.1034 -1.3526 21 6 -1.2410 4.3225 -1.9075 22 6 -0.1080 4.2082 -1.1192 23 7 -1.1391 4.6645 -3.2636 24 6 -2.2449 5.0797 -3.9190 25 8 -2.1872 5.3507 -5.0998 26 6 -3.5512 5.2043 -3.1767 27 8 -3.6067 4.2254 -2.1347 28 1 -0.3634 -1.0244 0.0817 29 1 -0.3633 0.5829 0.8464 30 1 -0.3633 0.4416 -0.9279 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.8944 -0.0847 -2.8970 34 1 1.5926 1.6084 2.0690 35 1 -1.5696 3.3817 1.8082 36 1 -3.5901 3.5930 0.4172 37 1 0.8686 4.3831 -1.5460 38 1 -0.2873 4.6040 -3.7238 39 1 -4.3782 5.0443 -3.8685 40 1 -3.6282 6.2016 -2.7438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547278651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:58 Heat of formation + Delta-G solvation = -142.083908 kcal Electronic energy + Delta-G solvation = -28246.858924 eV Core-core repulsion = 24152.989033 eV Total energy + Delta-G solvation = -4093.869892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.61807 -40.09181 -38.73270 -38.23947 -37.64753 -36.80268 -36.36100 -34.12443 -32.18646 -32.06268 -31.07159 -28.98567 -28.49878 -25.12975 -24.84472 -24.22305 -21.90932 -21.70328 -20.28739 -20.04900 -19.20597 -18.70109 -18.44607 -18.07519 -17.57987 -17.33417 -17.06664 -16.48718 -16.14848 -15.83220 -15.68192 -15.33389 -15.03021 -14.88147 -14.71209 -14.54992 -14.41705 -13.96720 -13.55218 -13.33817 -13.11992 -13.02713 -12.99511 -12.74143 -12.68915 -12.56686 -12.48079 -12.26508 -12.09137 -11.99339 -11.61241 -11.53108 -11.38294 -11.32647 -10.43288 -10.04560 -9.99218 -9.30191 -8.08876 -6.20545 -0.58394 -0.32823 -0.05966 1.04311 1.41708 1.45020 1.53883 1.54313 2.02290 2.17460 2.39755 2.47819 2.78501 2.89123 3.18388 3.32229 3.56783 3.89850 3.97474 4.03575 4.13468 4.26690 4.50962 4.54569 4.60330 4.66009 4.74668 4.78085 4.92026 4.97232 5.17816 5.26794 5.33860 5.41021 5.44108 5.57920 5.70925 5.84214 6.03014 6.06175 6.31215 6.50527 6.54130 6.86705 7.47989 8.92872 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011926 B = 0.004368 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.164891 B = 6408.880095 C = 7381.600295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.288 3.712 4 H 0.025 0.975 5 C -0.538 4.538 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.278 1.278 13 N -1.097 6.097 14 S 2.704 3.296 15 O -0.986 6.986 16 O -0.991 6.991 17 C -0.669 4.669 18 C -0.004 4.004 19 C -0.118 4.118 20 C 0.130 3.870 21 C 0.063 3.937 22 C -0.032 4.032 23 N -0.661 5.661 24 C 0.486 3.514 25 O -0.548 6.548 26 C 0.053 3.947 27 O -0.297 6.297 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.263 0.737 34 H 0.418 0.582 35 H 0.174 0.826 36 H 0.186 0.814 37 H 0.138 0.862 38 H 0.419 0.581 39 H 0.177 0.823 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.945 5.751 3.558 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.183 3.817 4 H 0.043 0.957 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.858 5.858 14 S 2.795 3.205 15 O -0.976 6.976 16 O -0.981 6.981 17 C -0.758 4.758 18 C -0.023 4.023 19 C -0.137 4.137 20 C 0.083 3.917 21 C -0.033 4.033 22 C -0.053 4.053 23 N -0.308 5.308 24 C 0.275 3.725 25 O -0.425 6.425 26 C -0.024 4.024 27 O -0.210 6.210 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.254 0.746 35 H 0.191 0.809 36 H 0.204 0.796 37 H 0.155 0.845 38 H 0.258 0.742 39 H 0.194 0.806 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.815 6.522 3.018 18.286 hybrid contribution 1.730 -0.428 -1.020 2.054 sum -15.085 6.094 1.998 16.391 Atomic orbital electron populations 1.21740 0.95960 1.01132 1.00858 1.21713 0.94639 0.97816 1.02066 1.18248 0.92512 0.91014 0.79951 0.95703 1.21866 0.93349 1.36583 1.05986 0.93055 1.25467 1.01663 0.95070 0.95424 1.69934 1.36138 1.38823 1.10089 0.85805 0.81820 0.78402 0.77144 1.19714 1.20983 1.20321 1.55272 1.82583 1.29758 1.18169 1.01213 0.73719 0.72870 0.72712 1.93513 1.84270 1.83361 1.36441 1.93550 1.54973 1.73641 1.75982 1.30670 1.18852 1.17920 1.08363 1.21107 0.88996 0.90995 1.01244 1.20969 1.01445 1.02518 0.88793 1.19020 0.83356 0.97640 0.91733 1.18059 0.94467 1.06437 0.84372 1.20396 0.98151 0.94940 0.91860 1.43872 1.13590 1.64316 1.08991 1.22193 0.87273 0.75410 0.87619 1.90805 1.85914 1.49515 1.16244 1.23593 0.94831 0.95104 0.88868 1.86282 1.34540 1.56855 1.43329 0.92685 0.91789 0.94659 0.90781 0.93532 0.92802 0.74649 0.80871 0.79634 0.84452 0.74157 0.80585 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.85 71.98 0.71 -3.78 16 2 C -0.12 -5.01 5.37 30.59 0.16 -4.85 16 3 C 0.29 12.78 2.17 44.24 0.10 12.88 16 4 H 0.03 1.19 7.55 -2.39 -0.02 1.18 16 5 C -0.54 -28.14 8.84 25.60 0.23 -27.91 16 6 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 7 C 0.02 1.25 5.30 84.65 0.45 1.70 16 8 N -0.91 -49.02 11.30 21.45 0.24 -48.78 16 9 Si 0.94 43.03 29.54 68.60 2.03 45.05 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -1.10 -39.74 4.77 -172.52 -0.82 -40.56 16 14 S 2.70 95.41 5.64 -56.49 -0.32 95.09 16 15 O -0.99 -34.69 17.42 -128.00 -2.23 -36.92 16 16 O -0.99 -43.76 16.92 -128.00 -2.17 -45.92 16 17 C -0.67 -19.40 5.77 22.29 0.13 -19.28 16 18 C 0.00 -0.08 9.51 22.30 0.21 0.14 16 19 C -0.12 -2.11 10.00 22.32 0.22 -1.89 16 20 C 0.13 2.78 6.44 22.59 0.15 2.93 16 21 C 0.06 1.63 6.54 38.14 0.25 1.88 16 22 C -0.03 -0.95 9.16 22.34 0.20 -0.74 16 23 N -0.66 -16.65 5.47 -302.69 -1.66 -18.31 16 24 C 0.49 11.35 7.94 87.63 0.70 12.04 16 25 O -0.55 -16.29 17.95 -3.05 -0.05 -16.35 16 26 C 0.05 0.75 7.17 71.25 0.51 1.26 16 27 O -0.30 -5.28 10.46 -93.34 -0.98 -6.26 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 3.54 5.98 -2.38 -0.01 3.53 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.42 12.91 8.85 -96.75 -0.86 12.05 16 35 H 0.17 2.87 7.73 -2.91 -0.02 2.84 16 36 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.14 4.53 7.50 -2.91 -0.02 4.51 16 38 H 0.42 10.57 8.89 -92.71 -0.82 9.75 16 39 H 0.18 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -71.41 353.80 -2.51 -73.91 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.57 Total: 24.67 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 4.01 Total: -25.63 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -2.24 Total: -107.65 kcal Atomic # 8 Polarization: -100.02 SS G_CDS: -5.43 Total: -105.45 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 95.41 SS G_CDS: -0.32 Total: 95.09 kcal Total: -71.41 -2.51 -73.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547278651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.170 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds