Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21255 * 120.00177 * 2 1 4 4 C 1.47163 * 120.00002 * 179.97438 * 2 1 3 5 5 C 1.39880 * 120.17090 * 0.02562 * 4 2 1 6 6 C 1.37865 * 119.82463 * 179.97438 * 5 4 2 7 7 C 1.38422 * 120.17359 * 0.26943 * 6 5 4 8 8 C 1.38387 * 120.34744 * 359.45224 * 7 6 5 9 9 S 1.76197 * 119.91226 * 180.29993 * 8 7 6 10 10 O 1.42099 * 106.40399 * 23.78810 * 9 8 7 11 11 O 1.42102 * 106.40233 * 156.71466 * 9 8 7 12 12 N 1.65600 * 107.21910 * 270.24942 * 9 8 7 13 13 C 1.46504 * 119.99922 * 64.99751 * 12 9 8 14 14 C 1.50704 * 109.47164 * 165.00102 * 13 12 9 15 15 O 1.21291 * 119.99770 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99627 * 180.02562 * 14 13 12 17 17 C 1.46501 * 120.00489 * 0.02562 * 16 14 13 18 18 C 1.37099 * 119.99349 * 179.97438 * 16 14 13 19 19 H 1.07994 * 120.00512 * 24.40058 * 18 16 14 20 20 C 1.38953 * 119.99822 * 204.39540 * 18 16 14 21 21 N 1.31407 * 120.00128 * 12.66031 * 20 18 16 22 22 Si 1.86798 * 119.99859 * 192.66714 * 20 18 16 23 23 H 1.48496 * 109.47287 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47259 * 119.99833 * 22 20 18 25 25 H 1.48507 * 109.46859 * 239.99682 * 22 20 18 26 26 C 1.37901 * 120.17431 * 0.54795 * 8 7 6 27 27 H 1.09001 * 109.47390 * 270.00610 * 1 2 3 28 28 H 1.09004 * 109.46761 * 30.00140 * 1 2 3 29 29 H 1.08996 * 109.47345 * 150.00342 * 1 2 3 30 30 H 1.07996 * 120.08504 * 359.97438 * 5 4 2 31 31 H 1.08003 * 119.90853 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.82713 * 179.70712 * 7 6 5 33 33 H 0.96994 * 120.00510 * 245.00179 * 12 9 8 34 34 H 1.08995 * 109.47598 * 285.00407 * 13 12 9 35 35 H 1.09003 * 109.46727 * 45.00459 * 13 12 9 36 36 H 1.09000 * 109.47152 * 85.85966 * 17 16 14 37 37 H 1.08996 * 109.46772 * 205.86351 * 17 16 14 38 38 H 1.09003 * 109.46591 * 325.86358 * 17 16 14 39 39 H 0.96997 * 120.00287 * 180.02562 * 21 20 18 40 40 H 1.07995 * 120.09131 * 179.74788 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2428 -1.2745 0.0006 5 6 1.5470 -2.4879 0.0006 6 6 2.2435 -3.6777 0.0006 7 6 3.6277 -3.6735 0.0062 8 6 4.3233 -2.4772 0.0004 9 16 6.0853 -2.4853 -0.0003 10 8 6.4806 -3.7370 -0.5446 11 8 6.4921 -1.2375 -0.5450 12 7 6.5762 -2.4873 1.5813 13 6 6.2758 -3.6356 2.4401 14 6 7.1226 -3.5671 3.6848 15 8 7.9001 -2.6491 3.8396 16 7 7.0159 -4.5259 4.6260 17 6 6.0773 -5.6350 4.4388 18 6 7.7866 -4.4638 5.7581 19 1 8.1683 -3.5131 6.1001 20 6 8.0767 -5.6240 6.4656 21 7 7.8321 -6.7987 5.9299 22 14 8.8141 -5.5137 8.1783 23 1 8.9917 -4.0870 8.5499 24 1 7.9048 -6.1698 9.1520 25 1 10.1326 -6.1969 8.1944 26 6 3.6412 -1.2788 0.0004 27 1 -0.3634 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 0.4670 -2.4928 0.0006 31 1 1.7077 -4.6154 0.0002 32 1 4.1677 -4.6089 0.0110 33 1 7.0625 -1.7282 1.9392 34 1 5.2216 -3.6170 2.7163 35 1 6.4943 -4.5583 1.9024 36 1 6.5571 -6.4231 3.8585 37 1 5.7814 -6.0285 5.4112 38 1 5.1949 -5.2784 3.9073 39 1 8.0343 -7.6086 6.4239 40 1 4.1854 -0.3460 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568636164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -131.504691 kcal Electronic energy + Delta-G solvation = -26997.820482 eV Core-core repulsion = 22904.409339 eV Total energy + Delta-G solvation = -4093.411143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11184 -40.47993 -39.29844 -38.47358 -37.10009 -36.90630 -35.56512 -33.66052 -33.36239 -32.28713 -30.35272 -29.04423 -27.68057 -25.83131 -25.09483 -24.15193 -21.62073 -21.14502 -20.39143 -19.12737 -18.90268 -18.71338 -17.58477 -17.44840 -17.18555 -16.81423 -16.67453 -16.39422 -16.32252 -16.09588 -15.99631 -15.39932 -15.14862 -14.91415 -14.48882 -14.07737 -13.99061 -13.65779 -13.54899 -13.39103 -13.33722 -13.26651 -13.16371 -13.07883 -13.06813 -12.91655 -12.75016 -12.64765 -12.34273 -12.11365 -11.96960 -11.01723 -10.91764 -10.74007 -10.57404 -10.41812 -10.19360 -9.68841 -8.35598 -6.00677 -0.81857 -0.56063 -0.17756 1.23016 1.35907 1.42905 1.55711 1.84035 1.94663 2.28012 2.42853 2.66495 2.89520 2.99591 3.07765 3.28954 3.69921 3.79056 3.85429 3.91306 4.11293 4.20982 4.25302 4.36271 4.38786 4.57963 4.66091 4.69590 4.74407 4.75479 4.90381 5.05091 5.06719 5.10196 5.25841 5.42044 5.45495 5.67230 5.83219 6.10140 6.44479 6.45509 7.13764 7.42311 7.95451 8.67233 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.002887 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.668356 B = 9695.907127 C =10158.583662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.392 3.608 3 O -0.507 6.507 4 C -0.210 4.210 5 C -0.001 4.001 6 C -0.139 4.139 7 C 0.000 4.000 8 C -0.691 4.691 9 S 2.712 3.288 10 O -0.974 6.974 11 O -0.988 6.988 12 N -1.105 6.105 13 C 0.114 3.886 14 C 0.431 3.569 15 O -0.626 6.626 16 N -0.455 5.455 17 C 0.109 3.891 18 C -0.346 4.346 19 H 0.071 0.929 20 C 0.002 3.998 21 N -0.891 5.891 22 Si 0.988 3.012 23 H -0.276 1.276 24 H -0.263 1.263 25 H -0.278 1.278 26 C 0.012 3.988 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.191 0.809 31 H 0.185 0.815 32 H 0.163 0.837 33 H 0.423 0.577 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.275 0.725 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.959 1.083 -11.479 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.273 3.727 3 O -0.386 6.386 4 C -0.212 4.212 5 C -0.019 4.019 6 C -0.158 4.158 7 C -0.019 4.019 8 C -0.781 4.781 9 S 2.805 3.195 10 O -0.964 6.964 11 O -0.979 6.979 12 N -0.867 5.867 13 C -0.015 4.015 14 C 0.219 3.781 15 O -0.514 6.514 16 N -0.174 5.174 17 C -0.033 4.033 18 C -0.474 4.474 19 H 0.089 0.911 20 C -0.201 4.201 21 N -0.529 5.529 22 Si 0.811 3.189 23 H -0.200 1.200 24 H -0.188 1.188 25 H -0.204 1.204 26 C -0.008 4.008 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.208 0.792 31 H 0.202 0.798 32 H 0.180 0.820 33 H 0.260 0.740 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.800 1.662 -12.121 24.132 hybrid contribution 0.777 0.483 1.321 1.607 sum -20.023 2.145 -10.801 22.852 Atomic orbital electron populations 1.22303 0.89145 1.06820 1.06645 1.23279 0.93999 0.86396 0.69036 1.90576 1.73509 1.35809 1.38723 1.20932 0.93547 0.97142 1.09551 1.22355 1.02827 0.89783 0.86904 1.21840 0.93045 1.00614 1.00262 1.21684 0.96663 0.96256 0.87316 1.30563 1.25571 1.00405 1.21526 1.01060 0.74417 0.72572 0.71500 1.93556 1.81663 1.44486 1.76713 1.93555 1.82503 1.45152 1.76690 1.55182 1.72438 1.28657 1.30462 1.21090 1.00360 0.89659 0.90419 1.20740 0.86621 0.85251 0.85493 1.90477 1.43320 1.37845 1.79714 1.43807 1.34888 1.22173 1.16532 1.21623 0.90775 0.88615 1.02308 1.19630 1.31090 0.94599 1.02056 0.91121 1.26046 0.96790 0.94071 1.03193 1.70043 1.46926 0.97794 1.38125 0.84966 0.78034 0.78220 0.77637 1.20026 1.18760 1.20415 1.21182 0.95298 0.96570 0.87739 0.86269 0.89122 0.86042 0.79187 0.79821 0.81992 0.73970 0.86362 0.86838 0.93297 0.91980 0.90341 0.91538 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 9.75 71.23 0.69 -0.51 16 2 C 0.39 6.99 7.23 28.03 0.20 7.19 16 3 O -0.51 -14.28 17.09 -2.95 -0.05 -14.33 16 4 C -0.21 -3.69 5.87 -20.15 -0.12 -3.81 16 5 C 0.00 -0.01 9.37 22.58 0.21 0.20 16 6 C -0.14 -1.28 10.03 22.23 0.22 -1.06 16 7 C 0.00 0.00 9.52 22.35 0.21 0.21 16 8 C -0.69 -15.99 5.94 22.23 0.13 -15.85 16 9 S 2.71 80.86 5.73 -56.49 -0.32 80.53 16 10 O -0.97 -31.90 16.75 -128.00 -2.14 -34.04 16 11 O -0.99 -35.46 17.27 -128.00 -2.21 -37.67 16 12 N -1.11 -36.12 5.93 -190.78 -1.13 -37.25 16 13 C 0.11 3.76 5.31 85.63 0.45 4.21 16 14 C 0.43 20.13 7.70 87.66 0.67 20.80 16 15 O -0.63 -34.39 15.44 -3.06 -0.05 -34.43 16 16 N -0.46 -22.31 3.01 -658.89 -1.98 -24.29 16 17 C 0.11 4.33 8.44 127.77 1.08 5.41 16 18 C -0.35 -19.08 9.24 84.04 0.78 -18.30 16 19 H 0.07 4.21 7.45 -2.91 -0.02 4.19 16 20 C 0.00 0.08 5.04 84.93 0.43 0.51 16 21 N -0.89 -45.28 10.83 21.66 0.23 -45.05 16 22 Si 0.99 41.37 29.57 68.60 2.03 43.40 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 25 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 26 C 0.01 0.29 9.07 22.58 0.20 0.50 16 27 H 0.12 0.38 8.14 -2.39 -0.02 0.37 16 28 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.12 -0.10 6.47 -2.39 -0.02 -0.11 16 30 H 0.19 -0.26 6.36 -2.91 -0.02 -0.28 16 31 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 32 H 0.16 2.17 7.61 -2.91 -0.02 2.15 16 33 H 0.42 15.08 7.70 -96.75 -0.75 14.33 16 34 H 0.12 2.90 7.41 -2.39 -0.02 2.88 16 35 H 0.11 3.38 7.72 -2.39 -0.02 3.36 16 36 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 37 H 0.06 2.64 6.80 -2.39 -0.02 2.62 16 38 H 0.08 2.23 6.61 -2.39 -0.02 2.21 16 39 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 40 H 0.13 3.59 7.20 -2.91 -0.02 3.57 16 Total: -1.00 -84.62 357.25 -0.10 -84.71 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.36 Total: 18.93 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.18 Total: -0.50 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -2.88 Total: -106.59 kcal Atomic # 8 Polarization: -116.03 SS G_CDS: -4.45 Total: -120.48 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 80.86 SS G_CDS: -0.32 Total: 80.53 kcal Total: -84.62 -0.10 -84.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568636164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.790 kcal (2) G-P(sol) polarization free energy of solvation -84.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds