Wall clock time and date at job start Sat Apr 11 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34705 * 117.00274 * 2 1 4 4 O 1.21476 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.47722 * 120.00447 * 179.97438 * 3 2 1 6 6 C 1.39611 * 120.56206 * 0.02562 * 5 3 2 7 7 N 1.31658 * 120.55808 * 179.97438 * 6 5 3 8 8 C 1.31962 * 121.88370 * 359.71350 * 7 6 5 9 9 C 1.38313 * 121.09058 * 0.58267 * 8 7 6 10 10 S 1.76199 * 120.34203 * 179.70210 * 9 8 7 11 11 O 1.42098 * 106.40330 * 156.18736 * 10 9 8 12 12 O 1.42097 * 106.40557 * 23.26604 * 10 9 8 13 13 N 1.65601 * 107.21769 * 269.72276 * 10 9 8 14 14 C 1.46501 * 120.00064 * 62.14815 * 13 10 9 15 15 C 1.52995 * 109.47569 * 160.10182 * 14 13 10 16 16 C 1.50709 * 115.54811 * 294.51797 * 15 14 13 17 17 H 1.07995 * 119.99998 * 114.53516 * 16 15 14 18 18 C 1.37877 * 120.00018 * 294.26703 * 16 15 14 19 19 N 1.31508 * 120.00137 * 176.83419 * 18 16 15 20 20 Si 1.86799 * 120.00089 * 356.83694 * 18 16 15 21 21 H 1.48502 * 109.47592 * 92.39173 * 20 18 16 22 22 H 1.48492 * 109.47231 * 212.39689 * 20 18 16 23 23 H 1.48508 * 109.46963 * 332.39603 * 20 18 16 24 24 C 1.52994 * 117.50416 * 80.18541 * 15 14 13 25 25 C 1.52993 * 117.50204 * 148.85225 * 15 14 13 26 26 C 1.38380 * 119.31354 * 359.42972 * 9 8 7 27 27 H 1.09004 * 109.47811 * 300.00615 * 1 2 3 28 28 H 1.09003 * 109.47115 * 60.00105 * 1 2 3 29 29 H 1.09000 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.71932 * 0.02562 * 6 5 3 31 31 H 1.08000 * 119.45102 * 180.28893 * 8 7 6 32 32 H 0.96997 * 120.00132 * 242.14264 * 13 10 9 33 33 H 1.09005 * 109.47222 * 40.09471 * 14 13 10 34 34 H 1.09005 * 109.47010 * 280.09795 * 14 13 10 35 35 H 0.97004 * 120.00344 * 179.97438 * 19 18 16 36 36 H 1.09004 * 117.50466 * 215.00582 * 24 15 14 37 37 H 1.09000 * 117.49749 * 0.03018 * 24 15 14 38 38 H 1.08995 * 117.50221 * 359.96963 * 25 15 14 39 39 H 1.09008 * 117.50383 * 144.97643 * 25 15 14 40 40 H 1.07994 * 120.85895 * 180.25251 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.3106 0.1142 0.0006 7 7 5.6254 0.1833 0.0006 8 6 6.2627 1.3388 -0.0050 9 6 5.5705 2.5362 0.0009 10 16 6.4416 4.0678 0.0011 11 8 5.5536 5.0346 -0.5432 12 8 7.7263 3.7990 -0.5433 13 7 6.6838 4.4937 1.5830 14 6 7.4861 3.6354 2.4581 15 6 7.9700 4.4451 3.6626 16 6 8.9311 5.5633 3.3504 17 1 8.6390 6.5892 3.5189 18 6 10.1853 5.2761 2.8548 19 7 11.0010 6.2530 2.5238 20 14 10.7257 3.4994 2.6535 21 1 10.4046 3.0368 1.2794 22 1 12.1898 3.3986 2.8803 23 1 10.0123 2.6501 3.6410 24 6 6.9824 4.6626 4.8106 25 6 8.1594 3.6996 4.9851 26 6 4.1868 2.5189 0.0008 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.8250 -0.8505 -0.0003 31 1 7.3426 1.3495 -0.0095 32 1 6.2945 5.3115 1.9301 33 1 8.3461 3.2561 1.9059 34 1 6.8783 2.7989 2.8032 35 1 11.8836 6.0510 2.1754 36 1 7.0276 5.6143 5.3402 37 1 5.9879 4.2283 4.7080 38 1 7.9388 2.6322 4.9972 39 1 8.9793 4.0175 5.6293 40 1 3.6213 3.4390 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571595535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:18 Heat of formation + Delta-G solvation = -85.324227 kcal Electronic energy + Delta-G solvation = -27489.162733 eV Core-core repulsion = 23397.754126 eV Total energy + Delta-G solvation = -4091.408607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24882 -40.01899 -37.55568 -37.05971 -36.90517 -35.69813 -33.59677 -33.21317 -32.40416 -32.15072 -28.31238 -26.54154 -25.26013 -24.93982 -24.43302 -21.93893 -21.67022 -19.72644 -19.26885 -18.59291 -17.96988 -17.45160 -17.09318 -16.85379 -16.76893 -16.66426 -16.22933 -15.40001 -14.93734 -14.56332 -14.39897 -14.21942 -13.73853 -13.60355 -13.53488 -13.42716 -13.16538 -12.68615 -12.62332 -12.56546 -11.94785 -11.83894 -11.78170 -11.73442 -11.28170 -11.07062 -11.02617 -10.76039 -10.69236 -10.64940 -10.32771 -10.04816 -10.00974 -9.65801 -9.27027 -8.93194 -8.72626 -8.52353 -6.13420 -4.16711 -0.13027 0.31536 0.53116 1.98478 2.10683 3.00997 3.26403 3.32386 3.38481 3.40865 3.78720 3.85331 4.03674 4.20863 4.34019 4.40734 4.41935 4.66416 4.71771 4.76014 4.79435 4.97446 5.09730 5.16081 5.30967 5.38651 5.48769 5.75111 5.79797 5.84475 5.89108 5.94892 6.04127 6.38921 6.49270 6.64870 6.96800 7.06304 7.15048 7.25036 7.42228 7.67309 8.44327 8.87988 9.48831 10.98156 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003491 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.548513 B = 8019.207429 C = 8197.173456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.518 3.482 4 O -0.495 6.495 5 C -0.205 4.205 6 C 0.206 3.794 7 N -0.497 5.497 8 C 0.233 3.767 9 C -0.742 4.742 10 S 2.694 3.306 11 O -0.957 6.957 12 O -0.940 6.940 13 N -1.085 6.085 14 C 0.147 3.853 15 C -0.007 4.007 16 C -0.488 4.488 17 H 0.079 0.921 18 C 0.083 3.917 19 N -0.891 5.891 20 Si 0.852 3.148 21 H -0.264 1.264 22 H -0.289 1.289 23 H -0.249 1.249 24 C -0.181 4.181 25 C -0.186 4.186 26 C 0.092 3.908 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.180 0.820 31 H 0.184 0.816 32 H 0.425 0.575 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.266 0.734 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 -14.482 -3.798 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.271 6.271 3 C 0.361 3.639 4 O -0.383 6.383 5 C -0.209 4.209 6 C 0.048 3.952 7 N -0.206 5.206 8 C 0.076 3.924 9 C -0.827 4.827 10 S 2.778 3.222 11 O -0.947 6.947 12 O -0.930 6.930 13 N -0.848 5.848 14 C 0.021 3.979 15 C -0.010 4.010 16 C -0.525 4.525 17 H 0.097 0.903 18 C -0.120 4.120 19 N -0.528 5.528 20 Si 0.678 3.322 21 H -0.189 1.189 22 H -0.216 1.216 23 H -0.173 1.173 24 C -0.218 4.218 25 C -0.225 4.225 26 C 0.066 3.934 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.197 0.803 31 H 0.201 0.799 32 H 0.262 0.738 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.755 -14.663 -4.693 22.754 hybrid contribution -0.769 -0.381 0.336 0.922 sum -17.524 -15.044 -4.358 23.503 Atomic orbital electron populations 1.23351 0.75194 1.04092 1.02994 1.86504 1.24169 1.32103 1.84323 1.20736 0.88253 0.81862 0.73058 1.90891 1.66409 1.35870 1.45101 1.20159 0.90988 0.96255 1.13511 1.23610 0.89335 0.98241 0.83995 1.68012 1.09685 1.28441 1.14435 1.23077 1.01452 0.85913 0.81994 1.32508 1.06465 1.24276 1.19415 1.02175 0.73940 0.72860 0.73256 1.93586 1.66733 1.57525 1.76810 1.93640 1.37752 1.84989 1.76612 1.54999 1.65259 1.34817 1.29714 1.21140 0.92768 0.91045 0.92985 1.19472 0.98623 0.97816 0.85052 1.20203 0.96522 0.91922 1.43895 0.90337 1.24912 0.96326 0.97003 0.93788 1.69866 1.08567 1.31877 1.42451 0.87239 0.78280 0.86616 0.80043 1.18922 1.21586 1.17280 1.22812 0.93001 1.00729 1.05257 1.23070 1.00318 0.95438 1.03693 1.21475 0.92106 0.98520 0.81311 0.91500 0.91535 0.87628 0.80320 0.79946 0.73845 0.91233 0.93812 0.92371 0.89474 0.90898 0.91177 0.89182 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.01 9.84 -40.50 -0.40 -3.41 16 3 C 0.52 5.66 7.91 34.61 0.27 5.93 16 4 O -0.49 -6.63 16.21 -19.25 -0.31 -6.94 16 5 C -0.21 -2.27 5.89 -104.84 -0.62 -2.89 16 6 C 0.21 2.06 10.79 -17.11 -0.18 1.87 16 7 N -0.50 -5.95 10.35 -12.90 -0.13 -6.08 16 8 C 0.23 2.99 10.68 -17.47 -0.19 2.81 16 9 C -0.74 -9.96 5.90 -39.50 -0.23 -10.19 16 10 S 2.69 44.31 5.74 -107.50 -0.62 43.69 16 11 O -0.96 -16.99 17.35 -57.17 -0.99 -17.98 16 12 O -0.94 -18.52 16.80 -57.17 -0.96 -19.49 16 13 N -1.09 -18.47 5.88 -10.61 -0.06 -18.53 16 14 C 0.15 2.72 5.66 -4.04 -0.02 2.69 16 15 C -0.01 -0.15 0.85 -155.66 -0.13 -0.28 16 16 C -0.49 -12.72 9.31 -34.44 -0.32 -13.04 16 17 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 18 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 19 N -0.89 -26.51 13.96 55.43 0.77 -25.73 16 20 Si 0.85 20.31 24.88 -169.99 -4.23 16.08 16 21 H -0.26 -6.27 7.02 56.52 0.40 -5.88 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.25 -5.36 5.81 56.52 0.33 -5.03 16 24 C -0.18 -3.25 9.96 -26.69 -0.27 -3.51 16 25 C -0.19 -3.55 8.15 -26.70 -0.22 -3.77 16 26 C 0.09 1.14 9.18 -38.86 -0.36 0.79 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.18 1.20 7.62 -52.48 -0.40 0.80 16 31 H 0.18 2.19 7.61 -52.49 -0.40 1.79 16 32 H 0.42 6.80 8.69 -34.47 -0.30 6.50 16 33 H 0.07 1.40 4.51 -51.93 -0.23 1.16 16 34 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 40 H 0.17 1.99 7.38 -52.49 -0.39 1.61 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -34.16 358.51 -7.56 -41.72 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.73 Total: 7.38 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.29 Total: -16.11 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.58 Total: -50.35 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -2.66 Total: -47.81 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.23 Total: 16.08 kcal Atomic # 16 Polarization: 44.31 SS G_CDS: -0.62 Total: 43.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.16 -7.56 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571595535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.602 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds