Wall clock time and date at job start Sat Apr 11 2020 05:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34705 * 117.00274 * 2 1 4 4 O 1.21476 * 119.99929 * 359.97438 * 3 2 1 5 5 C 1.47722 * 120.00447 * 179.97438 * 3 2 1 6 6 C 1.39611 * 120.56206 * 0.02562 * 5 3 2 7 7 N 1.31658 * 120.55808 * 179.97438 * 6 5 3 8 8 C 1.31962 * 121.88370 * 359.71350 * 7 6 5 9 9 C 1.38313 * 121.09058 * 0.58267 * 8 7 6 10 10 S 1.76199 * 120.34203 * 179.70210 * 9 8 7 11 11 O 1.42098 * 106.40330 * 156.18736 * 10 9 8 12 12 O 1.42097 * 106.40557 * 23.26604 * 10 9 8 13 13 N 1.65601 * 107.21769 * 269.72276 * 10 9 8 14 14 C 1.46501 * 120.00064 * 62.14815 * 13 10 9 15 15 C 1.52995 * 109.47569 * 160.10182 * 14 13 10 16 16 C 1.50709 * 115.54811 * 294.51797 * 15 14 13 17 17 H 1.07995 * 119.99998 * 114.53516 * 16 15 14 18 18 C 1.37877 * 120.00018 * 294.26703 * 16 15 14 19 19 N 1.31508 * 120.00137 * 176.83419 * 18 16 15 20 20 Si 1.86799 * 120.00089 * 356.83694 * 18 16 15 21 21 H 1.48502 * 109.47592 * 92.39173 * 20 18 16 22 22 H 1.48492 * 109.47231 * 212.39689 * 20 18 16 23 23 H 1.48508 * 109.46963 * 332.39603 * 20 18 16 24 24 C 1.52994 * 117.50416 * 80.18541 * 15 14 13 25 25 C 1.52993 * 117.50204 * 148.85225 * 15 14 13 26 26 C 1.38380 * 119.31354 * 359.42972 * 9 8 7 27 27 H 1.09004 * 109.47811 * 300.00615 * 1 2 3 28 28 H 1.09003 * 109.47115 * 60.00105 * 1 2 3 29 29 H 1.09000 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.71932 * 0.02562 * 6 5 3 31 31 H 1.08000 * 119.45102 * 180.28893 * 8 7 6 32 32 H 0.96997 * 120.00132 * 242.14264 * 13 10 9 33 33 H 1.09005 * 109.47222 * 40.09471 * 14 13 10 34 34 H 1.09005 * 109.47010 * 280.09795 * 14 13 10 35 35 H 0.97004 * 120.00344 * 179.97438 * 19 18 16 36 36 H 1.09004 * 117.50466 * 215.00582 * 24 15 14 37 37 H 1.09000 * 117.49749 * 0.03018 * 24 15 14 38 38 H 1.08995 * 117.50221 * 359.96963 * 25 15 14 39 39 H 1.09008 * 117.50383 * 144.97643 * 25 15 14 40 40 H 1.07994 * 120.85895 * 180.25251 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2002 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5387 1.2776 0.0006 6 6 4.3106 0.1142 0.0006 7 7 5.6254 0.1833 0.0006 8 6 6.2627 1.3388 -0.0050 9 6 5.5705 2.5362 0.0009 10 16 6.4416 4.0678 0.0011 11 8 5.5536 5.0346 -0.5432 12 8 7.7263 3.7990 -0.5433 13 7 6.6838 4.4937 1.5830 14 6 7.4861 3.6354 2.4581 15 6 7.9700 4.4451 3.6626 16 6 8.9311 5.5633 3.3504 17 1 8.6390 6.5892 3.5189 18 6 10.1853 5.2761 2.8548 19 7 11.0010 6.2530 2.5238 20 14 10.7257 3.4994 2.6535 21 1 10.4046 3.0368 1.2794 22 1 12.1898 3.3986 2.8803 23 1 10.0123 2.6501 3.6410 24 6 6.9824 4.6626 4.8106 25 6 8.1594 3.6996 4.9851 26 6 4.1868 2.5189 0.0008 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.8250 -0.8505 -0.0003 31 1 7.3426 1.3495 -0.0095 32 1 6.2945 5.3115 1.9301 33 1 8.3461 3.2561 1.9059 34 1 6.8783 2.7989 2.8032 35 1 11.8836 6.0510 2.1754 36 1 7.0276 5.6143 5.3402 37 1 5.9879 4.2283 4.7080 38 1 7.9388 2.6322 4.9972 39 1 8.9793 4.0175 5.6293 40 1 3.6213 3.4390 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571595535.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:18 Heat of formation + Delta-G solvation = -112.075056 kcal Electronic energy + Delta-G solvation = -27490.322736 eV Core-core repulsion = 23397.754126 eV Total energy + Delta-G solvation = -4092.568610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.097 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09287 -40.85753 -39.09295 -38.44898 -37.68744 -37.10422 -35.00732 -34.19530 -34.14879 -33.31936 -28.86738 -28.27088 -26.65794 -26.08580 -25.36593 -23.15505 -22.78291 -21.11376 -20.70750 -19.67365 -18.95033 -18.77200 -18.36232 -17.98983 -17.57228 -17.55059 -17.39798 -16.92557 -16.59936 -15.82372 -15.44277 -15.07910 -14.97923 -14.89768 -14.65391 -14.61496 -14.31637 -14.11509 -14.07663 -13.37377 -13.27712 -13.25839 -13.15030 -12.88468 -12.84867 -12.60208 -12.10481 -12.02994 -11.96260 -11.89626 -11.68145 -11.47361 -11.00020 -10.93043 -10.88854 -10.62150 -10.42576 -10.21578 -8.24224 -6.29600 -1.04535 -0.81879 -0.54609 1.13368 1.39394 1.42113 1.43139 1.54040 1.87235 2.25528 2.43221 2.58068 2.94708 3.03979 3.06313 3.36500 3.38132 3.43722 3.48513 3.77865 3.97920 4.00844 4.26522 4.29589 4.34460 4.39251 4.45808 4.48633 4.52391 4.52603 4.73993 4.98828 4.99478 5.01645 5.11855 5.18968 5.45810 5.59945 5.74479 6.09246 6.29342 6.35567 6.45083 6.78147 7.39230 8.91167 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003491 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.548513 B = 8019.207429 C = 8197.173456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.347 6.347 3 C 0.523 3.477 4 O -0.525 6.525 5 C -0.204 4.204 6 C 0.223 3.777 7 N -0.502 5.502 8 C 0.231 3.769 9 C -0.738 4.738 10 S 2.707 3.293 11 O -0.978 6.978 12 O -0.980 6.980 13 N -1.091 6.091 14 C 0.147 3.853 15 C -0.040 4.040 16 C -0.478 4.478 17 H 0.033 0.967 18 C 0.021 3.979 19 N -0.951 5.951 20 Si 0.903 3.097 21 H -0.265 1.265 22 H -0.300 1.300 23 H -0.205 1.205 24 C -0.160 4.160 25 C -0.179 4.179 26 C 0.087 3.913 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.140 0.860 30 H 0.217 0.783 31 H 0.188 0.812 32 H 0.427 0.573 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.170 -18.679 -3.032 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.368 3.632 4 O -0.416 6.416 5 C -0.209 4.209 6 C 0.066 3.934 7 N -0.211 5.211 8 C 0.073 3.927 9 C -0.828 4.828 10 S 2.796 3.204 11 O -0.968 6.968 12 O -0.970 6.970 13 N -0.853 5.853 14 C 0.021 3.979 15 C -0.042 4.042 16 C -0.516 4.516 17 H 0.052 0.948 18 C -0.177 4.177 19 N -0.590 5.590 20 Si 0.727 3.273 21 H -0.191 1.191 22 H -0.227 1.227 23 H -0.126 1.126 24 C -0.197 4.197 25 C -0.217 4.217 26 C 0.061 3.939 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.234 0.766 31 H 0.205 0.795 32 H 0.264 0.736 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.094 0.906 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -19.425 -18.847 -3.899 27.345 hybrid contribution -0.141 0.923 0.110 0.940 sum -19.566 -17.924 -3.788 26.804 Atomic orbital electron populations 1.23688 0.73450 1.06345 1.02912 1.86497 1.25763 1.30457 1.83570 1.20682 0.88067 0.82147 0.72330 1.90887 1.66974 1.37035 1.46665 1.20209 0.91395 0.95985 1.13270 1.24191 0.88562 0.99282 0.81368 1.68124 1.10541 1.27561 1.14859 1.23221 1.01891 0.85923 0.81648 1.31789 1.06534 1.22378 1.22059 1.01323 0.73135 0.73305 0.72646 1.93552 1.66899 1.59188 1.77156 1.93591 1.40177 1.85836 1.77390 1.54951 1.65428 1.35305 1.29620 1.21124 0.93270 0.91896 0.91602 1.19383 0.99766 0.97907 0.87139 1.20439 0.97329 0.91927 1.41909 0.94840 1.25777 0.96692 1.01111 0.94103 1.70038 1.09143 1.34384 1.45476 0.86422 0.77508 0.82412 0.80962 1.19079 1.22720 1.12628 1.22873 0.94286 1.00338 1.02188 1.23120 1.00332 0.97449 1.00818 1.21541 0.91715 0.99451 0.81194 0.91621 0.91687 0.84209 0.76637 0.79501 0.73619 0.92944 0.89189 0.92860 0.90595 0.87217 0.87667 0.90622 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.65 9.84 -56.15 -0.55 -5.20 16 3 C 0.52 10.02 7.91 70.33 0.56 10.57 16 4 O -0.53 -13.19 16.21 19.92 0.32 -12.86 16 5 C -0.20 -3.91 5.89 -20.00 -0.12 -4.03 16 6 C 0.22 3.53 10.79 85.05 0.92 4.45 16 7 N -0.50 -10.19 10.35 -194.71 -2.01 -12.20 16 8 C 0.23 5.34 10.68 84.69 0.90 6.24 16 9 C -0.74 -18.51 5.90 22.32 0.13 -18.37 16 10 S 2.71 88.55 5.74 -56.49 -0.32 88.23 16 11 O -0.98 -35.18 17.35 -128.00 -2.22 -37.40 16 12 O -0.98 -39.13 16.80 -128.00 -2.15 -41.28 16 13 N -1.09 -36.24 5.88 -187.48 -1.10 -37.35 16 14 C 0.15 5.08 5.66 86.38 0.49 5.57 16 15 C -0.04 -1.58 0.85 -52.93 -0.05 -1.63 16 16 C -0.48 -25.58 9.31 25.60 0.24 -25.34 16 17 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 18 C 0.02 1.18 5.47 84.66 0.46 1.64 16 19 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 20 Si 0.90 41.92 24.88 68.60 1.71 43.63 16 21 H -0.27 -12.30 7.02 99.48 0.70 -11.60 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 23 H -0.20 -7.92 5.81 99.48 0.58 -7.34 16 24 C -0.16 -5.26 9.96 30.62 0.30 -4.95 16 25 C -0.18 -6.15 8.15 30.62 0.25 -5.90 16 26 C 0.09 2.00 9.18 22.74 0.21 2.21 16 27 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.22 1.73 7.62 -2.91 -0.02 1.71 16 31 H 0.19 4.11 7.61 -2.91 -0.02 4.08 16 32 H 0.43 13.62 8.69 -96.75 -0.84 12.78 16 33 H 0.05 2.00 4.51 -2.38 -0.01 1.99 16 34 H 0.09 2.30 8.09 -2.38 -0.02 2.28 16 35 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.11 2.84 8.14 -2.39 -0.02 2.83 16 38 H 0.11 2.93 8.14 -2.39 -0.02 2.92 16 39 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 40 H 0.17 3.80 7.38 -2.91 -0.02 3.78 16 Total: -1.00 -77.91 358.51 -0.42 -78.34 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.12 Total: 23.48 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 5.50 Total: -28.11 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -2.82 Total: -108.82 kcal Atomic # 8 Polarization: -92.15 SS G_CDS: -4.60 Total: -96.75 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.71 Total: 43.63 kcal Atomic # 16 Polarization: 88.55 SS G_CDS: -0.32 Total: 88.23 kcal Total: -77.91 -0.42 -78.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571595535.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.739 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds