Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46910 * 2 1 4 4 C 1.50693 * 109.47363 * 119.99758 * 2 1 3 5 5 H 1.08007 * 119.99781 * 114.35613 * 4 2 1 6 6 C 1.37879 * 120.00125 * 294.36326 * 4 2 1 7 7 N 1.31512 * 119.99780 * 156.84877 * 6 4 2 8 8 Si 1.86801 * 120.00048 * 336.56624 * 6 4 2 9 9 H 1.48493 * 109.47295 * 180.27690 * 8 6 4 10 10 H 1.48499 * 109.46795 * 300.27913 * 8 6 4 11 11 H 1.48500 * 109.46886 * 60.27730 * 8 6 4 12 12 N 1.46501 * 109.47171 * 240.00328 * 2 1 3 13 13 C 1.46506 * 119.99627 * 299.99863 * 12 2 1 14 14 S 1.65594 * 120.00306 * 119.99781 * 12 2 1 15 15 O 1.42103 * 106.40361 * 203.53928 * 14 12 2 16 16 O 1.42093 * 106.40491 * 336.46032 * 14 12 2 17 17 N 1.65604 * 107.21830 * 90.00109 * 14 12 2 18 18 C 1.46502 * 120.00090 * 64.99814 * 17 14 12 19 19 H 1.09000 * 108.89144 * 24.30206 * 18 17 14 20 20 C 1.54210 * 108.92491 * 265.62844 * 18 17 14 21 21 S 1.83638 * 102.94360 * 214.14253 * 20 18 17 22 22 O 1.42100 * 109.89268 * 282.45492 * 21 20 18 23 23 O 1.42100 * 109.81153 * 148.07107 * 21 20 18 24 24 C 1.83826 * 94.17543 * 35.27157 * 21 20 18 25 25 C 1.52380 * 108.92414 * 142.97259 * 18 17 14 26 26 H 1.09003 * 108.92255 * 241.48242 * 25 18 17 27 27 C 1.52996 * 108.92813 * 0.13421 * 25 18 17 28 28 H 1.08994 * 109.46756 * 173.22059 * 1 2 3 29 29 H 1.09000 * 109.46991 * 293.21995 * 1 2 3 30 30 H 1.08998 * 109.46962 * 53.21928 * 1 2 3 31 31 H 0.96996 * 120.00770 * 354.63877 * 7 6 4 32 32 H 1.08991 * 109.47140 * 89.99970 * 13 12 2 33 33 H 1.09000 * 109.46686 * 210.00301 * 13 12 2 34 34 H 1.08996 * 109.46823 * 329.99935 * 13 12 2 35 35 H 0.97004 * 119.99700 * 245.00014 * 17 14 12 36 36 H 1.08995 * 110.73689 * 332.55888 * 20 18 17 37 37 H 1.09004 * 110.72974 * 95.86998 * 20 18 17 38 38 H 1.08995 * 110.73293 * 206.45581 * 24 21 20 39 39 H 1.09002 * 110.73040 * 83.13919 * 24 21 20 40 40 H 1.09004 * 109.47518 * 60.00128 * 27 25 18 41 41 H 1.08998 * 109.47132 * 180.02562 * 27 25 18 42 42 H 1.09003 * 109.46997 * 300.00211 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5761 -1.6385 1.1339 6 6 1.7978 -0.1754 2.4794 7 7 1.8074 -0.9528 3.5400 8 14 1.4743 1.6549 2.6658 9 1 1.2602 1.9763 4.0996 10 1 2.6417 2.4183 2.1563 11 1 0.2637 2.0252 1.8894 12 7 2.0184 -0.6905 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5645 -3.5260 16 8 2.6904 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4441 -1.8416 19 1 4.5943 -2.0565 -2.5625 20 6 4.9961 -2.0772 -0.4424 21 16 6.5258 -3.0819 -0.2910 22 8 6.3912 -4.2831 -1.0381 23 8 6.9399 -3.1269 1.0676 24 6 7.5654 -1.8836 -1.2198 25 6 6.5907 -1.3338 -2.2807 26 1 6.7238 -1.8933 -3.2067 27 6 6.9211 0.1375 -2.5390 28 1 -0.3632 -1.0204 -0.1213 29 1 -0.3633 0.4052 0.9444 30 1 -0.3633 0.6153 -0.8231 31 1 1.9018 -1.9127 3.4371 32 1 0.7376 -2.1444 -1.9993 33 1 2.4629 -2.5818 -1.9864 34 1 1.5295 -2.5968 -0.4709 35 1 5.0734 0.6551 -1.5283 36 1 4.9620 -1.3069 0.3281 37 1 4.1122 -2.7132 -0.3932 38 1 8.4068 -2.3891 -1.6937 39 1 7.9129 -1.0851 -0.5643 40 1 6.7682 0.7103 -1.6242 41 1 7.9606 0.2266 -2.8543 42 1 6.2696 0.5240 -3.3228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588907216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = -129.871653 kcal Electronic energy + Delta-G solvation = -28250.889096 eV Core-core repulsion = 24292.992718 eV Total energy + Delta-G solvation = -3957.896377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -38.75708 -37.06589 -36.90981 -36.44641 -36.03529 -35.51279 -32.91373 -32.68866 -30.37939 -29.81797 -27.52116 -25.81217 -24.79879 -24.44559 -20.79668 -20.41356 -19.27118 -18.97400 -17.76947 -17.56352 -17.16382 -16.67865 -16.35449 -15.95438 -15.59596 -15.30294 -15.02313 -14.20514 -14.10666 -13.75650 -13.57582 -13.39533 -13.06091 -12.87152 -12.47259 -12.36829 -12.17324 -12.16664 -12.09893 -12.07710 -11.86468 -11.78906 -11.65448 -11.61516 -11.56978 -11.39117 -11.19301 -10.88608 -10.71676 -10.55269 -10.48700 -10.13595 -9.87783 -9.51806 -9.31536 -8.50781 -8.14021 -6.58755 -4.22826 -0.03443 0.98699 2.36544 3.18640 3.33133 3.39729 3.46534 3.53983 3.78938 3.88474 4.14603 4.22885 4.38763 4.46452 4.56811 4.73356 4.81089 5.01650 5.05719 5.17106 5.22503 5.31473 5.40878 5.55656 5.65985 5.81224 5.89223 5.93958 5.99617 6.11090 6.32012 6.41891 6.48303 6.60662 6.87196 7.01487 7.23581 7.39896 7.88680 8.23505 8.75638 9.42748 10.76139 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.005933 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.435920 B = 4718.337176 C = 5869.214400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.047 0.953 4 C -0.621 4.621 5 H 0.070 0.930 6 C 0.045 3.955 7 N -0.888 5.888 8 Si 1.023 2.977 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.275 1.275 12 N -0.983 5.983 13 C 0.101 3.899 14 S 2.778 3.222 15 O -0.992 6.992 16 O -0.981 6.981 17 N -1.117 6.117 18 C 0.165 3.835 19 H 0.111 0.889 20 C -0.596 4.596 21 S 2.375 3.625 22 O -0.933 6.933 23 O -0.932 6.932 24 C -0.578 4.578 25 C -0.093 4.093 26 H 0.103 0.897 27 C -0.143 4.143 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.025 0.975 31 H 0.272 0.728 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.418 0.582 36 H 0.162 0.838 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.605 -0.537 -11.154 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.143 3.857 3 H 0.065 0.935 4 C -0.659 4.659 5 H 0.088 0.912 6 C -0.164 4.164 7 N -0.520 5.520 8 Si 0.850 3.150 9 H -0.209 1.209 10 H -0.206 1.206 11 H -0.201 1.201 12 N -0.825 5.825 13 C -0.045 4.045 14 S 2.787 3.213 15 O -0.976 6.976 16 O -0.965 6.965 17 N -0.878 5.878 18 C 0.054 3.946 19 H 0.128 0.872 20 C -0.728 4.728 21 S 2.558 3.442 22 O -0.931 6.931 23 O -0.929 6.929 24 C -0.707 4.707 25 C -0.114 4.114 26 H 0.122 0.878 27 C -0.201 4.201 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.255 0.745 36 H 0.180 0.820 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.148 0.078 -10.404 13.854 hybrid contribution 0.376 -0.370 -0.868 1.016 sum 9.524 -0.292 -11.272 14.760 Atomic orbital electron populations 1.22384 0.98423 1.00445 1.00016 1.18966 0.91352 0.92771 0.82647 0.93546 1.22144 1.41666 1.11509 0.90606 0.91230 1.25563 0.93270 1.05471 0.92063 1.70850 1.42784 1.06486 1.31919 0.84336 0.77786 0.76372 0.76484 1.20863 1.20599 1.20063 1.57470 1.64518 1.21373 1.39122 1.21297 0.99269 0.81795 1.02157 1.01966 0.72728 0.73199 0.73457 1.93565 1.85891 1.76247 1.41874 1.93595 1.83574 1.32387 1.86914 1.56447 1.32467 1.14065 1.84776 1.20833 0.94885 0.84619 0.94232 0.87156 1.31119 1.20195 1.15740 1.05736 1.09509 0.80554 0.77914 0.76192 1.93628 1.85271 1.41001 1.73154 1.93639 1.80140 1.87251 1.31891 1.30535 1.11358 1.17077 1.11740 1.21472 0.90711 1.00402 0.98860 0.87836 1.21879 1.01936 0.93713 1.02600 0.93164 0.92098 0.95542 0.91840 0.93500 0.93015 0.89833 0.74472 0.82037 0.83636 0.84558 0.84209 0.91566 0.91760 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.03 37.16 0.34 -2.82 16 2 C 0.25 5.29 2.22 -69.08 -0.15 5.14 16 3 H 0.05 1.05 5.48 -51.93 -0.28 0.76 16 4 C -0.62 -14.79 8.30 -34.44 -0.29 -15.07 16 5 H 0.07 1.68 7.38 -52.48 -0.39 1.30 16 6 C 0.04 1.16 5.19 -17.82 -0.09 1.06 16 7 N -0.89 -24.81 13.69 55.43 0.76 -24.05 16 8 Si 1.02 23.38 26.45 -169.99 -4.50 18.88 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.93 6.17 56.52 0.35 -5.58 16 12 N -0.98 -17.86 3.12 -115.85 -0.36 -18.22 16 13 C 0.10 1.60 8.48 59.85 0.51 2.11 16 14 S 2.78 47.19 6.07 -107.50 -0.65 46.53 16 15 O -0.99 -17.83 16.53 -57.17 -0.94 -18.77 16 16 O -0.98 -19.57 16.70 -57.17 -0.95 -20.53 16 17 N -1.12 -14.37 4.47 -4.62 -0.02 -14.39 16 18 C 0.16 1.82 3.27 -67.61 -0.22 1.60 16 19 H 0.11 1.17 6.96 -51.93 -0.36 0.81 16 20 C -0.60 -7.25 7.04 37.79 0.27 -6.99 16 21 S 2.37 27.17 6.07 -107.50 -0.65 26.52 16 22 O -0.93 -13.05 18.17 -57.67 -1.05 -14.10 16 23 O -0.93 -14.60 18.16 -57.67 -1.05 -15.64 16 24 C -0.58 -4.30 6.86 37.79 0.26 -4.04 16 25 C -0.09 -0.77 3.18 -90.31 -0.29 -1.06 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 27 C -0.14 -1.09 7.66 37.16 0.28 -0.80 16 28 H 0.05 0.98 7.45 -51.93 -0.39 0.59 16 29 H 0.06 1.30 5.50 -51.93 -0.29 1.02 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.27 7.53 8.73 -40.82 -0.36 7.17 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.69 7.03 -51.93 -0.36 0.32 16 34 H 0.08 1.39 6.92 -51.93 -0.36 1.03 16 35 H 0.42 4.57 6.22 -34.47 -0.21 4.36 16 36 H 0.16 2.12 8.05 -51.93 -0.42 1.70 16 37 H 0.15 1.80 7.17 -51.93 -0.37 1.43 16 38 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.14 0.86 7.85 -51.93 -0.41 0.46 16 40 H 0.07 0.47 6.70 -51.93 -0.35 0.12 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 LS Contribution 350.86 15.07 5.29 5.29 Total: -1.00 -35.31 350.86 -9.43 -44.74 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.91 Total: 4.61 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 0.61 Total: -20.87 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.38 Total: -56.66 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -4.00 Total: -69.04 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.50 Total: 18.88 kcal Atomic # 16 Polarization: 74.36 SS G_CDS: -1.31 Total: 73.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.31 -9.43 -44.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588907216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.129 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds