Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46910 * 2 1 4 4 C 1.50693 * 109.47363 * 119.99758 * 2 1 3 5 5 H 1.08007 * 119.99781 * 114.35613 * 4 2 1 6 6 C 1.37879 * 120.00125 * 294.36326 * 4 2 1 7 7 N 1.31512 * 119.99780 * 156.84877 * 6 4 2 8 8 Si 1.86801 * 120.00048 * 336.56624 * 6 4 2 9 9 H 1.48493 * 109.47295 * 180.27690 * 8 6 4 10 10 H 1.48499 * 109.46795 * 300.27913 * 8 6 4 11 11 H 1.48500 * 109.46886 * 60.27730 * 8 6 4 12 12 N 1.46501 * 109.47171 * 240.00328 * 2 1 3 13 13 C 1.46506 * 119.99627 * 299.99863 * 12 2 1 14 14 S 1.65594 * 120.00306 * 119.99781 * 12 2 1 15 15 O 1.42103 * 106.40361 * 203.53928 * 14 12 2 16 16 O 1.42093 * 106.40491 * 336.46032 * 14 12 2 17 17 N 1.65604 * 107.21830 * 90.00109 * 14 12 2 18 18 C 1.46502 * 120.00090 * 64.99814 * 17 14 12 19 19 H 1.09000 * 108.89144 * 24.30206 * 18 17 14 20 20 C 1.54210 * 108.92491 * 265.62844 * 18 17 14 21 21 S 1.83638 * 102.94360 * 214.14253 * 20 18 17 22 22 O 1.42100 * 109.89268 * 282.45492 * 21 20 18 23 23 O 1.42100 * 109.81153 * 148.07107 * 21 20 18 24 24 C 1.83826 * 94.17543 * 35.27157 * 21 20 18 25 25 C 1.52380 * 108.92414 * 142.97259 * 18 17 14 26 26 H 1.09003 * 108.92255 * 241.48242 * 25 18 17 27 27 C 1.52996 * 108.92813 * 0.13421 * 25 18 17 28 28 H 1.08994 * 109.46756 * 173.22059 * 1 2 3 29 29 H 1.09000 * 109.46991 * 293.21995 * 1 2 3 30 30 H 1.08998 * 109.46962 * 53.21928 * 1 2 3 31 31 H 0.96996 * 120.00770 * 354.63877 * 7 6 4 32 32 H 1.08991 * 109.47140 * 89.99970 * 13 12 2 33 33 H 1.09000 * 109.46686 * 210.00301 * 13 12 2 34 34 H 1.08996 * 109.46823 * 329.99935 * 13 12 2 35 35 H 0.97004 * 119.99700 * 245.00014 * 17 14 12 36 36 H 1.08995 * 110.73689 * 332.55888 * 20 18 17 37 37 H 1.09004 * 110.72974 * 95.86998 * 20 18 17 38 38 H 1.08995 * 110.73293 * 206.45581 * 24 21 20 39 39 H 1.09002 * 110.73040 * 83.13919 * 24 21 20 40 40 H 1.09004 * 109.47518 * 60.00128 * 27 25 18 41 41 H 1.08998 * 109.47132 * 180.02562 * 27 25 18 42 42 H 1.09003 * 109.46997 * 300.00211 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5761 -1.6385 1.1339 6 6 1.7978 -0.1754 2.4794 7 7 1.8074 -0.9528 3.5400 8 14 1.4743 1.6549 2.6658 9 1 1.2602 1.9763 4.0996 10 1 2.6417 2.4183 2.1563 11 1 0.2637 2.0252 1.8894 12 7 2.0184 -0.6905 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 2.8227 -0.5645 -3.5260 16 8 2.6904 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1357 -1.4441 -1.8416 19 1 4.5943 -2.0565 -2.5625 20 6 4.9961 -2.0772 -0.4424 21 16 6.5258 -3.0819 -0.2910 22 8 6.3912 -4.2831 -1.0381 23 8 6.9399 -3.1269 1.0676 24 6 7.5654 -1.8836 -1.2198 25 6 6.5907 -1.3338 -2.2807 26 1 6.7238 -1.8933 -3.2067 27 6 6.9211 0.1375 -2.5390 28 1 -0.3632 -1.0204 -0.1213 29 1 -0.3633 0.4052 0.9444 30 1 -0.3633 0.6153 -0.8231 31 1 1.9018 -1.9127 3.4371 32 1 0.7376 -2.1444 -1.9993 33 1 2.4629 -2.5818 -1.9864 34 1 1.5295 -2.5968 -0.4709 35 1 5.0734 0.6551 -1.5283 36 1 4.9620 -1.3069 0.3281 37 1 4.1122 -2.7132 -0.3932 38 1 8.4068 -2.3891 -1.6937 39 1 7.9129 -1.0851 -0.5643 40 1 6.7682 0.7103 -1.6242 41 1 7.9606 0.2266 -2.8543 42 1 6.2696 0.5240 -3.3228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588907216.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -160.221855 kcal Electronic energy + Delta-G solvation = -28252.205179 eV Core-core repulsion = 24292.992718 eV Total energy + Delta-G solvation = -3959.212461 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.62274 -38.36023 -38.10473 -37.99685 -37.07873 -36.95049 -34.57842 -33.80569 -31.63158 -31.13458 -28.22902 -27.24177 -26.60219 -25.31047 -22.45373 -21.28461 -20.48479 -19.93945 -19.46166 -18.99716 -18.51882 -17.78434 -17.36006 -16.96405 -16.79203 -16.27636 -16.14115 -15.67198 -15.46259 -15.03898 -14.97934 -14.51439 -14.44184 -13.91668 -13.64819 -13.58530 -13.48091 -13.38966 -13.26819 -13.24673 -13.21385 -13.16132 -13.08180 -12.97512 -12.64789 -12.44897 -12.30278 -12.24355 -11.87704 -11.84292 -11.70569 -11.64176 -11.35845 -11.15777 -10.56335 -10.36168 -9.78981 -8.61013 -6.24183 -0.93808 -0.34871 1.48675 1.51669 1.53749 1.70652 1.91658 2.51381 2.52968 2.64494 2.93532 3.07891 3.27554 3.34063 3.54017 3.66789 3.82002 3.95797 3.99910 4.28625 4.35981 4.50592 4.59512 4.65013 4.74806 4.75935 4.81638 4.83998 4.89347 4.96951 5.09202 5.10988 5.17968 5.32682 5.38132 5.55107 5.73841 6.04280 6.09252 6.17985 6.76010 7.46331 8.72014 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.005933 C = 0.004770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.435920 B = 4718.337176 C = 5869.214400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.247 3.753 3 H 0.042 0.958 4 C -0.600 4.600 5 H 0.058 0.942 6 C 0.000 4.000 7 N -0.928 5.928 8 Si 1.047 2.953 9 H -0.292 1.292 10 H -0.265 1.265 11 H -0.254 1.254 12 N -0.990 5.990 13 C 0.095 3.905 14 S 2.792 3.208 15 O -1.000 7.000 16 O -1.010 7.010 17 N -1.105 6.105 18 C 0.157 3.843 19 H 0.117 0.883 20 C -0.606 4.606 21 S 2.377 3.623 22 O -0.963 6.963 23 O -0.983 6.983 24 C -0.540 4.540 25 C -0.093 4.093 26 H 0.128 0.872 27 C -0.150 4.150 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.259 0.741 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.428 0.572 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.173 0.827 39 H 0.161 0.839 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.187 0.524 -13.564 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.141 3.859 3 H 0.059 0.941 4 C -0.638 4.638 5 H 0.076 0.924 6 C -0.202 4.202 7 N -0.563 5.563 8 Si 0.870 3.130 9 H -0.218 1.218 10 H -0.191 1.191 11 H -0.179 1.179 12 N -0.831 5.831 13 C -0.051 4.051 14 S 2.801 3.199 15 O -0.983 6.983 16 O -0.994 6.994 17 N -0.870 5.870 18 C 0.047 3.953 19 H 0.135 0.865 20 C -0.737 4.737 21 S 2.565 3.435 22 O -0.960 6.960 23 O -0.980 6.980 24 C -0.673 4.673 25 C -0.115 4.115 26 H 0.146 0.854 27 C -0.208 4.208 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.268 0.732 36 H 0.166 0.834 37 H 0.153 0.847 38 H 0.190 0.810 39 H 0.179 0.821 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.695 1.110 -12.815 16.728 hybrid contribution -0.036 -0.733 -0.241 0.773 sum 10.659 0.377 -13.056 16.859 Atomic orbital electron populations 1.22334 0.97666 1.01182 1.00131 1.18749 0.91952 0.92341 0.82820 0.94076 1.22310 1.39518 1.10607 0.91401 0.92436 1.26484 0.93428 1.07838 0.92411 1.70954 1.46466 1.05877 1.32993 0.84023 0.79146 0.73497 0.76283 1.21829 1.19055 1.17864 1.57417 1.65476 1.22133 1.38058 1.21445 1.00862 0.80779 1.01999 1.01392 0.73205 0.72180 0.73089 1.93555 1.86396 1.76235 1.42132 1.93552 1.84475 1.34149 1.87236 1.56134 1.30967 1.15446 1.84451 1.21138 0.97246 0.83357 0.93533 0.86491 1.31100 1.20805 1.15522 1.06288 1.09248 0.80587 0.78278 0.75388 1.93580 1.85818 1.43488 1.73134 1.93571 1.80801 1.88225 1.35409 1.30397 1.10870 1.15409 1.10673 1.21572 0.88432 1.01707 0.99750 0.85360 1.21965 1.03425 0.92709 1.02741 0.92590 0.93180 0.93833 0.93185 0.92418 0.90560 0.91174 0.73183 0.83419 0.84672 0.80951 0.82081 0.91303 0.89349 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.15 9.03 71.98 0.65 -5.50 16 2 C 0.25 10.39 2.22 44.24 0.10 10.49 16 3 H 0.04 1.81 5.48 -2.39 -0.01 1.80 16 4 C -0.60 -28.82 8.30 25.60 0.21 -28.61 16 5 H 0.06 2.86 7.38 -2.91 -0.02 2.84 16 6 C 0.00 0.02 5.19 84.66 0.44 0.46 16 7 N -0.93 -53.41 13.69 21.45 0.29 -53.11 16 8 Si 1.05 46.83 26.45 68.60 1.81 48.65 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.25 -10.44 6.17 99.48 0.61 -9.83 16 12 N -0.99 -34.91 3.12 -520.45 -1.62 -36.54 16 13 C 0.09 2.92 8.48 127.77 1.08 4.00 16 14 S 2.79 90.08 6.07 -56.49 -0.34 89.74 16 15 O -1.00 -33.70 16.53 -128.00 -2.12 -35.82 16 16 O -1.01 -38.75 16.70 -128.00 -2.14 -40.89 16 17 N -1.11 -26.15 4.47 -168.53 -0.75 -26.90 16 18 C 0.16 3.13 3.27 45.20 0.15 3.27 16 19 H 0.12 2.20 6.96 -2.39 -0.02 2.18 16 20 C -0.61 -14.54 7.04 72.39 0.51 -14.03 16 21 S 2.38 52.62 6.07 -56.49 -0.34 52.27 16 22 O -0.96 -26.36 18.17 -127.53 -2.32 -28.67 16 23 O -0.98 -31.33 18.16 -127.53 -2.32 -33.65 16 24 C -0.54 -5.84 6.86 72.39 0.50 -5.34 16 25 C -0.09 -1.17 3.18 -10.59 -0.03 -1.20 16 26 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 27 C -0.15 -1.63 7.66 71.98 0.55 -1.08 16 28 H 0.06 2.13 7.45 -2.39 -0.02 2.11 16 29 H 0.05 2.09 5.50 -2.39 -0.01 2.08 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.26 15.01 8.73 -92.71 -0.81 14.20 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.93 7.03 -2.39 -0.02 1.92 16 34 H 0.07 2.34 6.92 -2.39 -0.02 2.32 16 35 H 0.43 8.37 6.22 -96.74 -0.60 7.77 16 36 H 0.15 3.96 8.05 -2.39 -0.02 3.94 16 37 H 0.14 3.45 7.17 -2.38 -0.02 3.44 16 38 H 0.17 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.16 1.24 7.85 -2.39 -0.02 1.22 16 40 H 0.07 0.72 6.70 -2.39 -0.02 0.70 16 41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.81 7.68 -2.39 -0.02 0.79 16 Total: -1.00 -77.17 350.86 -5.37 -82.54 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.32 Total: 19.92 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.15 Total: -37.54 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -2.08 Total: -116.55 kcal Atomic # 8 Polarization: -130.14 SS G_CDS: -8.89 Total: -139.03 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.81 Total: 48.65 kcal Atomic # 16 Polarization: 142.70 SS G_CDS: -0.69 Total: 142.01 kcal Total: -77.17 -5.37 -82.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588907216.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.683 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds