Wall clock time and date at job start Sat Apr 11 2020 05:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47258 * 2 1 4 4 C 1.46500 * 120.00173 * 84.99735 * 3 2 1 5 5 C 1.50696 * 109.46944 * 275.00148 * 4 3 2 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 S 1.65608 * 119.99876 * 264.99755 * 3 2 1 14 14 O 1.42106 * 106.40145 * 23.54096 * 13 3 2 15 15 O 1.42098 * 106.40240 * 156.45481 * 13 3 2 16 16 N 1.65598 * 107.22001 * 270.00019 * 13 3 2 17 17 C 1.46499 * 119.99777 * 65.00168 * 16 13 3 18 18 H 1.08998 * 108.90334 * 24.29678 * 17 16 13 19 19 C 1.52981 * 108.92786 * 265.61418 * 17 16 13 20 20 C 1.54947 * 108.73986 * 209.23184 * 19 17 16 21 21 S 1.83845 * 101.10812 * 42.03732 * 20 19 17 22 22 O 1.42103 * 109.61126 * 210.98250 * 21 20 19 23 23 O 1.42098 * 109.61403 * 77.02683 * 21 20 19 24 24 C 1.53619 * 108.93016 * 142.98405 * 17 16 13 25 25 H 1.09005 * 110.26540 * 242.06468 * 24 17 16 26 26 C 1.52996 * 110.27190 * 4.03709 * 24 17 16 27 27 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47005 * 300.00161 * 1 2 3 29 29 H 1.09008 * 109.47066 * 60.00188 * 1 2 3 30 30 H 1.09006 * 109.47362 * 239.99713 * 2 1 3 31 31 H 1.09001 * 109.47334 * 119.99555 * 2 1 3 32 32 H 1.09000 * 109.46609 * 155.00330 * 4 3 2 33 33 H 1.08999 * 109.46486 * 35.00409 * 4 3 2 34 34 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 35 35 H 0.96993 * 119.99604 * 245.00033 * 16 13 3 36 36 H 1.08995 * 109.65147 * 329.17510 * 19 17 16 37 37 H 1.08991 * 109.65292 * 89.49797 * 19 17 16 38 38 H 1.08998 * 111.17608 * 284.05421 * 20 19 17 39 39 H 1.08997 * 111.09291 * 159.97569 * 20 19 17 40 40 H 1.08998 * 109.46906 * 60.00170 * 26 24 17 41 41 H 1.09003 * 109.47418 * 179.97438 * 26 24 17 42 42 H 1.08997 * 109.47207 * 300.00135 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2639 5 6 0.8360 2.7289 1.6355 6 1 -0.0226 2.5949 0.9941 7 6 0.7226 3.4683 2.7938 8 7 1.7698 3.6368 3.5714 9 14 -0.9162 4.2376 3.2540 10 1 -1.9379 3.1709 3.4078 11 1 -0.7744 4.9749 4.5353 12 1 -1.3392 5.1779 2.1853 13 16 2.4123 2.1202 -1.4288 14 8 1.6869 1.4414 -2.4449 15 8 2.3057 3.5186 -1.2000 16 7 4.0145 1.8137 -1.7138 17 6 4.4657 0.4413 -1.9569 18 1 3.6276 -0.1443 -2.3349 19 6 4.9399 -0.1666 -0.6356 20 6 6.0379 -1.2176 -0.9368 21 16 7.0183 -0.3463 -2.2251 22 8 7.5827 -1.2962 -3.1186 23 8 7.8413 0.6377 -1.6140 24 6 5.5773 0.4625 -3.0170 25 1 5.2679 -0.0973 -3.8997 26 6 5.9193 1.9044 -3.3976 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9080 2.8919 1.1512 33 1 2.4690 1.4183 2.0479 34 1 2.6208 3.2376 3.3322 35 1 4.6541 2.5428 -1.7198 36 1 5.3468 0.6171 0.0033 37 1 4.1021 -0.6491 -0.1324 38 1 5.6051 -2.1379 -1.3290 39 1 6.6428 -1.4175 -0.0524 40 1 6.2603 2.4424 -2.5132 41 1 6.7087 1.9043 -4.1493 42 1 5.0328 2.3936 -3.8012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599457738.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:39 Heat of formation + Delta-G solvation = -171.296195 kcal Electronic energy + Delta-G solvation = -27734.670498 eV Core-core repulsion = 23774.977818 eV Total energy + Delta-G solvation = -3959.692680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.45288 -38.31528 -38.04046 -37.84051 -37.08516 -36.91277 -34.85393 -33.64933 -32.65020 -31.35286 -28.22075 -27.35751 -24.89282 -24.72271 -23.50214 -22.03264 -20.72149 -19.80175 -19.33830 -18.69857 -18.47181 -17.71740 -17.53593 -17.22584 -16.79023 -16.54658 -15.67472 -15.54509 -15.40330 -15.11713 -14.84164 -14.62011 -14.42792 -14.18261 -13.85591 -13.72634 -13.60056 -13.46425 -13.24975 -13.20860 -13.12110 -13.06136 -12.94303 -12.89194 -12.78001 -12.53153 -12.44038 -12.27028 -12.18471 -11.96655 -11.75727 -11.56790 -11.18321 -10.98946 -10.75715 -10.50244 -9.76987 -8.57426 -6.30252 -0.96574 -0.41682 1.50361 1.53417 1.60541 1.78967 1.93747 2.49360 2.56212 2.60749 2.96240 3.18544 3.20831 3.37154 3.47796 3.67189 3.72725 3.88676 3.99453 4.10122 4.34564 4.41436 4.44536 4.54546 4.62408 4.67040 4.75031 4.80320 4.91136 4.95691 4.97463 5.08243 5.09509 5.13841 5.40582 5.53816 5.74815 5.94308 5.97873 6.30359 6.62671 7.43689 8.80247 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.003747 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.065853 B = 7470.954107 C = 7650.639907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.120 3.880 3 N -0.989 5.989 4 C 0.261 3.739 5 C -0.611 4.611 6 H 0.048 0.952 7 C -0.027 4.027 8 N -0.936 5.936 9 Si 1.102 2.898 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.792 3.208 14 O -0.999 6.999 15 O -1.014 7.014 16 N -1.116 6.116 17 C 0.152 3.848 18 H 0.128 0.872 19 C -0.162 4.162 20 C -0.548 4.548 21 S 2.381 3.619 22 O -0.970 6.970 23 O -0.964 6.964 24 C -0.544 4.544 25 H 0.180 0.820 26 C -0.151 4.151 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.009 0.991 33 H 0.030 0.970 34 H 0.260 0.740 35 H 0.424 0.576 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.174 0.826 39 H 0.158 0.842 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.871 -13.520 -11.402 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.005 4.005 3 N -0.830 5.830 4 C 0.137 3.863 5 C -0.651 4.651 6 H 0.066 0.934 7 C -0.226 4.226 8 N -0.574 5.574 9 Si 0.925 3.075 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.800 3.200 14 O -0.982 6.982 15 O -0.998 6.998 16 N -0.880 5.880 17 C 0.043 3.957 18 H 0.146 0.854 19 C -0.202 4.202 20 C -0.680 4.680 21 S 2.567 3.433 22 O -0.967 6.967 23 O -0.962 6.962 24 C -0.656 4.656 25 H 0.197 0.803 26 C -0.209 4.209 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.111 0.889 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.263 0.737 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.192 0.808 39 H 0.176 0.824 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.414 -12.195 -11.058 18.055 hybrid contribution 0.440 -0.293 -0.600 0.800 sum 7.854 -12.488 -11.658 18.803 Atomic orbital electron populations 1.22244 0.97100 1.02520 1.01403 1.21418 0.94616 0.80708 1.03788 1.57487 1.79185 1.24107 1.22245 1.18717 0.95655 0.90511 0.81466 1.22679 0.97669 1.35223 1.09514 0.93409 1.26937 1.06359 0.95696 0.93636 1.70925 1.01686 1.44739 1.40018 0.83115 0.71793 0.76511 0.76077 1.19076 1.20762 1.20966 1.01445 0.73620 0.72105 0.72824 1.93533 1.71273 1.76216 1.57228 1.93587 1.86284 1.33758 1.86146 1.56261 1.28453 1.15311 1.87940 1.21166 0.99034 0.82503 0.92996 0.85439 1.22845 1.01129 0.98473 0.97773 1.30383 1.10573 1.09918 1.17167 1.09391 0.78599 0.76697 0.78576 1.93570 1.77075 1.61478 1.64546 1.93585 1.65665 1.60344 1.76559 1.30382 1.14950 1.10232 1.10006 0.80282 1.21681 1.03924 0.91994 1.03323 0.89464 0.93284 0.94475 0.88304 0.88938 0.97323 0.95180 0.93069 0.73667 0.88829 0.86056 0.80847 0.82413 0.90659 0.89624 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.32 9.83 71.98 0.71 -4.62 16 2 C 0.12 3.26 5.06 86.38 0.44 3.69 16 3 N -0.99 -35.05 2.86 -519.85 -1.48 -36.54 16 4 C 0.26 11.85 4.43 85.63 0.38 12.23 16 5 C -0.61 -32.74 8.41 25.60 0.22 -32.52 16 6 H 0.05 2.60 6.89 -2.91 -0.02 2.58 16 7 C -0.03 -1.52 5.46 84.66 0.46 -1.05 16 8 N -0.94 -54.81 13.65 21.45 0.29 -54.51 16 9 Si 1.10 50.04 29.90 68.60 2.05 52.09 16 10 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 S 2.79 97.41 6.02 -56.49 -0.34 97.07 16 14 O -1.00 -35.66 16.43 -128.00 -2.10 -37.77 16 15 O -1.01 -46.57 17.11 -128.00 -2.19 -48.76 16 16 N -1.12 -26.42 4.58 -168.55 -0.77 -27.19 16 17 C 0.15 2.45 3.29 45.19 0.15 2.60 16 18 H 0.13 1.67 7.03 -2.39 -0.02 1.65 16 19 C -0.16 -2.22 5.99 31.25 0.19 -2.03 16 20 C -0.55 -4.77 7.46 72.65 0.54 -4.23 16 21 S 2.38 36.82 5.76 -56.49 -0.33 36.49 16 22 O -0.97 -20.76 18.16 -127.52 -2.32 -23.07 16 23 O -0.96 -22.57 17.32 -127.52 -2.21 -24.78 16 24 C -0.54 -7.24 3.87 30.80 0.12 -7.12 16 25 H 0.18 1.38 8.14 -2.38 -0.02 1.36 16 26 C -0.15 -2.33 7.66 71.98 0.55 -1.78 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.80 6.59 -2.39 -0.02 1.79 16 29 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.10 1.94 7.09 -2.38 -0.02 1.92 16 31 H 0.09 2.17 8.00 -2.39 -0.02 2.15 16 32 H 0.01 0.44 7.47 -2.39 -0.02 0.42 16 33 H 0.03 1.35 7.87 -2.39 -0.02 1.33 16 34 H 0.26 14.96 7.22 -92.71 -0.67 14.29 16 35 H 0.42 9.26 6.33 -96.76 -0.61 8.64 16 36 H 0.09 1.51 8.04 -2.39 -0.02 1.49 16 37 H 0.12 1.41 6.97 -2.39 -0.02 1.40 16 38 H 0.17 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.24 6.64 -2.39 -0.02 1.22 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.33 7.63 -2.39 -0.02 1.32 16 Total: -1.00 -83.78 357.20 -5.12 -88.90 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.53 Total: 12.91 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 3.75 Total: -34.83 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -1.96 Total: -118.24 kcal Atomic # 8 Polarization: -125.56 SS G_CDS: -8.82 Total: -134.38 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Atomic # 16 Polarization: 134.22 SS G_CDS: -0.67 Total: 133.56 kcal Total: -83.78 -5.12 -88.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599457738.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.396 kcal (2) G-P(sol) polarization free energy of solvation -83.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds