Wall clock time and date at job start Sat Apr 11 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39935 * 125.75223 * 2 1 4 4 C 1.30445 * 108.90057 * 179.74581 * 3 2 1 5 5 C 1.41312 * 108.02405 * 0.44518 * 4 3 2 6 6 C 1.47394 * 126.41531 * 179.81927 * 5 4 3 7 7 O 1.21608 * 119.99360 * 179.68673 * 6 5 4 8 8 N 1.34776 * 120.00371 * 359.68564 * 6 5 4 9 9 C 1.39396 * 120.00006 * 174.91581 * 8 6 5 10 10 C 1.38617 * 119.57775 * 174.64783 * 9 8 6 11 11 C 1.40802 * 118.79050 * 180.02562 * 10 9 8 12 12 C 1.41547 * 120.99615 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00154 * 206.26015 * 12 11 10 14 14 C 1.40034 * 119.99692 * 26.26847 * 12 11 10 15 15 N 1.30742 * 120.00080 * 9.84440 * 14 12 11 16 16 Si 1.86796 * 119.99817 * 189.84910 * 14 12 11 17 17 H 1.48501 * 109.47076 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47250 * 119.99827 * 16 14 12 19 19 H 1.48504 * 109.46987 * 239.99598 * 16 14 12 20 20 C 1.41185 * 118.00906 * 0.02562 * 11 10 9 21 21 C 1.37579 * 119.01769 * 359.97438 * 20 11 10 22 22 N 1.32082 * 121.11495 * 0.02562 * 21 20 11 23 23 C 1.34265 * 125.75173 * 180.02562 * 2 1 3 24 24 C 1.50696 * 126.29185 * 359.94371 * 23 2 1 25 25 F 1.39897 * 109.47403 * 30.02715 * 24 23 2 26 26 F 1.39904 * 109.47179 * 150.02637 * 24 23 2 27 27 F 1.39899 * 109.47574 * 270.02678 * 24 23 2 28 28 H 1.09000 * 109.47401 * 269.96109 * 1 2 3 29 29 H 1.08996 * 109.47120 * 29.96448 * 1 2 3 30 30 H 1.09000 * 109.47641 * 149.96366 * 1 2 3 31 31 H 1.08002 * 125.99205 * 180.25778 * 4 3 2 32 32 H 0.97003 * 119.99727 * 354.90821 * 8 6 5 33 33 H 1.07992 * 120.60775 * 0.04022 * 10 9 8 34 34 H 0.96995 * 120.00018 * 179.97438 * 15 14 12 35 35 H 1.08004 * 120.48966 * 179.97438 * 20 11 10 36 36 H 1.08006 * 119.44081 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1356 0.0000 4 6 3.5310 0.7575 0.0055 5 6 3.5600 -0.6553 -0.0012 6 6 4.7638 -1.5058 -0.0020 7 8 4.6525 -2.7168 -0.0023 8 7 5.9877 -0.9415 -0.0024 9 6 7.1242 -1.7416 0.1038 10 6 8.3798 -1.1652 -0.0093 11 6 9.5164 -1.9890 0.1001 12 6 10.8206 -1.4498 -0.0086 13 1 11.6364 -2.0729 -0.3440 14 6 11.0531 -0.1083 0.3191 15 7 10.1181 0.5931 0.9047 16 14 12.6992 0.6790 -0.0808 17 1 13.5795 -0.3206 -0.7375 18 1 12.4883 1.8300 -0.9951 19 1 13.3386 1.1532 1.1728 20 6 9.3163 -3.3691 0.3203 21 6 8.0309 -3.8497 0.4189 22 7 6.9905 -3.0433 0.3105 23 6 2.2494 -1.0896 -0.0005 24 6 1.7848 -2.5232 0.0001 25 9 0.5542 -2.6149 -0.6590 26 9 2.7275 -3.3192 -0.6596 27 9 1.6415 -2.9666 1.3192 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5133 30 1 -0.3634 -0.8896 -0.5144 31 1 4.3917 1.4098 0.0108 32 1 6.0777 0.0215 -0.0767 33 1 8.4843 -0.1037 -0.1780 34 1 10.2793 1.5222 1.1320 35 1 10.1598 -4.0377 0.4100 36 1 7.8700 -4.9043 0.5877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610791504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:42 Heat of formation + Delta-G solvation = -53.110041 kcal Electronic energy + Delta-G solvation = -29244.605143 eV Core-core repulsion = 24509.585507 eV Total energy + Delta-G solvation = -4735.019636 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.28537 -47.91453 -47.55011 -41.79812 -39.36979 -37.64574 -34.38700 -34.02975 -33.57646 -31.58357 -30.52875 -28.99895 -27.33296 -26.16907 -25.99200 -23.24692 -21.95017 -21.75664 -20.92881 -19.80989 -18.68925 -18.63725 -18.26192 -17.63943 -16.93046 -16.15698 -15.95690 -15.29074 -15.21518 -14.92316 -14.57166 -14.48323 -14.29221 -14.22514 -14.19942 -14.06633 -13.82295 -13.71511 -13.59791 -13.11618 -12.90855 -12.65540 -12.60510 -12.43041 -12.25358 -11.44593 -11.36610 -11.19316 -10.92224 -10.28378 -10.12450 -10.12075 -9.77790 -9.47012 -9.38942 -9.08160 -7.98773 -7.75034 -7.04828 -6.75422 -4.63295 0.79575 1.64055 1.88331 2.41178 2.69857 2.79014 3.02076 3.07333 3.23173 3.36037 3.52182 3.76089 3.85445 3.88610 4.16357 4.20442 4.66323 4.69600 4.70974 4.80121 4.99820 5.02127 5.31606 5.67382 5.92002 6.02423 6.14084 6.56700 6.63110 6.79733 6.94511 7.01495 7.12314 7.37045 7.45391 7.76100 7.93197 8.18765 8.41329 8.68769 8.75102 8.84029 9.67230 10.08947 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.003025 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.604820 B = 9253.334297 C =10426.488535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.333 5.333 3 N -0.263 5.263 4 C 0.080 3.920 5 C -0.212 4.212 6 C 0.565 3.435 7 O -0.465 6.465 8 N -0.647 5.647 9 C 0.337 3.663 10 C -0.236 4.236 11 C 0.142 3.858 12 C -0.453 4.453 13 H 0.082 0.918 14 C 0.075 3.925 15 N -0.795 5.795 16 Si 0.914 3.086 17 H -0.260 1.260 18 H -0.272 1.272 19 H -0.274 1.274 20 C -0.281 4.281 21 C 0.119 3.881 22 N -0.551 5.551 23 C 0.036 3.964 24 C 0.539 3.461 25 F -0.181 7.181 26 F -0.123 7.123 27 F -0.164 7.164 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.205 0.795 32 H 0.407 0.593 33 H 0.134 0.866 34 H 0.280 0.720 35 H 0.102 0.898 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.328 3.437 -1.799 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.113 5.113 3 N -0.084 5.084 4 C -0.106 4.106 5 C -0.228 4.228 6 C 0.349 3.651 7 O -0.335 6.335 8 N -0.293 5.293 9 C 0.112 3.888 10 C -0.262 4.262 11 C 0.133 3.867 12 C -0.485 4.485 13 H 0.100 0.900 14 C -0.142 4.142 15 N -0.422 5.422 16 Si 0.738 3.262 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.199 1.199 20 C -0.305 4.305 21 C -0.036 4.036 22 N -0.270 5.270 23 C -0.097 4.097 24 C 0.482 3.518 25 F -0.163 7.163 26 F -0.104 7.104 27 F -0.146 7.146 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.222 0.778 32 H 0.242 0.758 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.356 3.405 -1.624 18.740 hybrid contribution 2.039 0.624 -0.083 2.134 sum -16.317 4.029 -1.707 16.893 Atomic orbital electron populations 1.22473 0.72598 1.06539 1.04890 1.48299 1.07428 1.02193 1.53398 1.77279 1.02072 1.06118 1.22900 1.24247 0.95578 0.93378 0.97363 1.20449 0.92374 0.94250 1.15717 1.17211 0.81925 0.87454 0.78525 1.90957 1.85263 1.12673 1.44616 1.43092 1.04062 1.10006 1.72100 1.18121 0.84316 0.88834 0.97487 1.21662 0.89418 1.01877 1.13233 1.17589 0.93080 0.90326 0.85680 1.19616 0.94476 0.95019 1.39387 0.90028 1.25940 0.98893 0.97138 0.92279 1.69741 1.33957 1.09525 1.28937 0.86163 0.81519 0.79455 0.79021 1.18381 1.19691 1.19908 1.21940 0.96714 0.96963 1.14867 1.21750 0.88129 0.97349 0.96340 1.67179 1.34034 1.02619 1.23181 1.21179 0.92381 0.88681 1.07451 1.17172 0.74941 0.84694 0.74971 1.93105 1.45139 1.96516 1.81499 1.93480 1.62657 1.74162 1.80104 1.93264 1.95448 1.90373 1.35483 0.89476 0.87900 0.87629 0.77824 0.75769 0.84867 0.90866 0.87952 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 11.16 59.84 0.67 1.19 16 2 N -0.33 -3.85 3.98 -63.34 -0.25 -4.10 16 3 N -0.26 -3.23 12.50 30.87 0.39 -2.84 16 4 C 0.08 0.97 11.51 -16.97 -0.20 0.78 16 5 C -0.21 -3.21 6.09 -105.07 -0.64 -3.85 16 6 C 0.57 10.81 7.71 -12.53 -0.10 10.72 16 7 O -0.47 -10.50 11.46 5.27 0.06 -10.44 16 8 N -0.65 -12.43 5.37 -12.48 -0.07 -12.50 16 9 C 0.34 8.00 7.40 -154.76 -1.15 6.86 16 10 C -0.24 -5.85 8.61 -38.47 -0.33 -6.18 16 11 C 0.14 3.66 5.60 -106.55 -0.60 3.06 16 12 C -0.45 -11.46 9.14 -37.65 -0.34 -11.80 16 13 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 14 C 0.08 1.78 5.31 -17.34 -0.09 1.69 16 15 N -0.80 -19.07 10.70 55.55 0.59 -18.48 16 16 Si 0.91 17.68 29.57 -169.99 -5.03 12.65 16 17 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 C -0.28 -6.80 9.90 -38.70 -0.38 -7.18 16 21 C 0.12 2.82 11.15 -17.68 -0.20 2.62 16 22 N -0.55 -13.86 7.88 -12.54 -0.10 -13.96 16 23 C 0.04 0.50 6.46 -81.59 -0.53 -0.02 16 24 C 0.54 7.56 3.24 36.00 0.12 7.67 16 25 F -0.18 -2.03 14.52 2.25 0.03 -1.99 16 26 F -0.12 -2.13 13.50 2.25 0.03 -2.10 16 27 F -0.16 -2.38 17.30 2.25 0.04 -2.34 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.11 0.65 5.52 -51.93 -0.29 0.36 16 31 H 0.21 1.77 7.51 -52.49 -0.39 1.37 16 32 H 0.41 6.26 7.67 -40.82 -0.31 5.94 16 33 H 0.13 3.25 6.11 -52.49 -0.32 2.93 16 34 H 0.28 6.07 8.29 -40.82 -0.34 5.73 16 35 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 36 H 0.12 2.57 8.06 -52.48 -0.42 2.14 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -32.11 326.77 -5.69 -37.80 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.55 Total: 7.84 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -3.76 Total: 5.55 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.56 Total: -51.89 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.06 Total: -10.44 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.10 Total: -6.44 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.11 -5.69 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.308 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds