Wall clock time and date at job start Sat Apr 11 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39935 * 125.75223 * 2 1 4 4 C 1.30445 * 108.90057 * 179.74581 * 3 2 1 5 5 C 1.41312 * 108.02405 * 0.44518 * 4 3 2 6 6 C 1.47394 * 126.41531 * 179.81927 * 5 4 3 7 7 O 1.21608 * 119.99360 * 179.68673 * 6 5 4 8 8 N 1.34776 * 120.00371 * 359.68564 * 6 5 4 9 9 C 1.39396 * 120.00006 * 174.91581 * 8 6 5 10 10 C 1.38617 * 119.57775 * 174.64783 * 9 8 6 11 11 C 1.40802 * 118.79050 * 180.02562 * 10 9 8 12 12 C 1.41547 * 120.99615 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00154 * 206.26015 * 12 11 10 14 14 C 1.40034 * 119.99692 * 26.26847 * 12 11 10 15 15 N 1.30742 * 120.00080 * 9.84440 * 14 12 11 16 16 Si 1.86796 * 119.99817 * 189.84910 * 14 12 11 17 17 H 1.48501 * 109.47076 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47250 * 119.99827 * 16 14 12 19 19 H 1.48504 * 109.46987 * 239.99598 * 16 14 12 20 20 C 1.41185 * 118.00906 * 0.02562 * 11 10 9 21 21 C 1.37579 * 119.01769 * 359.97438 * 20 11 10 22 22 N 1.32082 * 121.11495 * 0.02562 * 21 20 11 23 23 C 1.34265 * 125.75173 * 180.02562 * 2 1 3 24 24 C 1.50696 * 126.29185 * 359.94371 * 23 2 1 25 25 F 1.39897 * 109.47403 * 30.02715 * 24 23 2 26 26 F 1.39904 * 109.47179 * 150.02637 * 24 23 2 27 27 F 1.39899 * 109.47574 * 270.02678 * 24 23 2 28 28 H 1.09000 * 109.47401 * 269.96109 * 1 2 3 29 29 H 1.08996 * 109.47120 * 29.96448 * 1 2 3 30 30 H 1.09000 * 109.47641 * 149.96366 * 1 2 3 31 31 H 1.08002 * 125.99205 * 180.25778 * 4 3 2 32 32 H 0.97003 * 119.99727 * 354.90821 * 8 6 5 33 33 H 1.07992 * 120.60775 * 0.04022 * 10 9 8 34 34 H 0.96995 * 120.00018 * 179.97438 * 15 14 12 35 35 H 1.08004 * 120.48966 * 179.97438 * 20 11 10 36 36 H 1.08006 * 119.44081 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1356 0.0000 4 6 3.5310 0.7575 0.0055 5 6 3.5600 -0.6553 -0.0012 6 6 4.7638 -1.5058 -0.0020 7 8 4.6525 -2.7168 -0.0023 8 7 5.9877 -0.9415 -0.0024 9 6 7.1242 -1.7416 0.1038 10 6 8.3798 -1.1652 -0.0093 11 6 9.5164 -1.9890 0.1001 12 6 10.8206 -1.4498 -0.0086 13 1 11.6364 -2.0729 -0.3440 14 6 11.0531 -0.1083 0.3191 15 7 10.1181 0.5931 0.9047 16 14 12.6992 0.6790 -0.0808 17 1 13.5795 -0.3206 -0.7375 18 1 12.4883 1.8300 -0.9951 19 1 13.3386 1.1532 1.1728 20 6 9.3163 -3.3691 0.3203 21 6 8.0309 -3.8497 0.4189 22 7 6.9905 -3.0433 0.3105 23 6 2.2494 -1.0896 -0.0005 24 6 1.7848 -2.5232 0.0001 25 9 0.5542 -2.6149 -0.6590 26 9 2.7275 -3.3192 -0.6596 27 9 1.6415 -2.9666 1.3192 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5133 30 1 -0.3634 -0.8896 -0.5144 31 1 4.3917 1.4098 0.0108 32 1 6.0777 0.0215 -0.0767 33 1 8.4843 -0.1037 -0.1780 34 1 10.2793 1.5222 1.1320 35 1 10.1598 -4.0377 0.4100 36 1 7.8700 -4.9043 0.5877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610791504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:41 Heat of formation + Delta-G solvation = -73.027211 kcal Electronic energy + Delta-G solvation = -29245.468817 eV Core-core repulsion = 24509.585507 eV Total energy + Delta-G solvation = -4735.883309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.38967 -48.97482 -48.75548 -42.82744 -41.00325 -39.34516 -36.10773 -35.54292 -34.69989 -32.69811 -32.36415 -30.60883 -28.40295 -27.86224 -27.17029 -24.58793 -23.77739 -22.99679 -22.17668 -21.28815 -19.84147 -19.76287 -19.43227 -19.37365 -18.20529 -17.58036 -17.05142 -16.95033 -16.43638 -16.10442 -16.00398 -15.83829 -15.66545 -15.56733 -15.45217 -15.27325 -15.17902 -14.96362 -14.89932 -14.49796 -14.31862 -14.18777 -13.71355 -13.58244 -13.37832 -13.12797 -12.83899 -12.67784 -12.39276 -12.04815 -11.83754 -11.47969 -11.16365 -11.06646 -11.02449 -10.14452 -9.88422 -9.59114 -8.83635 -8.54281 -6.53786 -0.31337 0.67949 0.70409 1.03181 1.06050 1.40067 1.44901 1.58698 1.59421 2.06877 2.23789 2.30004 2.33595 2.83325 2.87870 3.07996 3.15945 3.60191 3.78916 3.81495 4.02600 4.22416 4.25994 4.40440 4.54863 4.78594 4.87162 4.95408 5.00419 5.13745 5.26441 5.28813 5.51688 5.66120 5.96272 6.03580 6.18352 6.49733 6.60649 6.83088 6.88212 7.26782 7.85823 8.33111 Molecular weight = 340.09amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.003025 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.604820 B = 9253.334297 C =10426.488535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.319 5.319 3 N -0.266 5.266 4 C 0.091 3.909 5 C -0.238 4.238 6 C 0.565 3.435 7 O -0.505 6.505 8 N -0.640 5.640 9 C 0.336 3.664 10 C -0.252 4.252 11 C 0.113 3.887 12 C -0.483 4.483 13 H 0.081 0.919 14 C 0.038 3.962 15 N -0.815 5.815 16 Si 0.988 3.012 17 H -0.261 1.261 18 H -0.262 1.262 19 H -0.267 1.267 20 C -0.296 4.296 21 C 0.113 3.887 22 N -0.576 5.576 23 C 0.036 3.964 24 C 0.541 3.459 25 F -0.163 7.163 26 F -0.146 7.146 27 F -0.169 7.169 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.234 0.766 32 H 0.423 0.577 33 H 0.132 0.868 34 H 0.292 0.708 35 H 0.115 0.885 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.084 5.334 -1.901 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.099 5.099 3 N -0.087 5.087 4 C -0.093 4.093 5 C -0.254 4.254 6 C 0.351 3.649 7 O -0.378 6.378 8 N -0.287 5.287 9 C 0.110 3.890 10 C -0.277 4.277 11 C 0.105 3.895 12 C -0.514 4.514 13 H 0.099 0.901 14 C -0.178 4.178 15 N -0.441 5.441 16 Si 0.809 3.191 17 H -0.185 1.185 18 H -0.186 1.186 19 H -0.192 1.192 20 C -0.319 4.319 21 C -0.041 4.041 22 N -0.295 5.295 23 C -0.100 4.100 24 C 0.484 3.516 25 F -0.144 7.144 26 F -0.127 7.127 27 F -0.150 7.150 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.132 0.868 31 H 0.251 0.749 32 H 0.262 0.738 33 H 0.150 0.850 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.169 5.346 -1.725 19.975 hybrid contribution 2.111 0.045 -0.030 2.111 sum -17.058 5.391 -1.755 17.976 Atomic orbital electron populations 1.22935 0.69877 1.08123 1.06715 1.48725 1.08839 1.01201 1.51114 1.77298 1.02063 1.06205 1.23118 1.24660 0.96523 0.92225 0.95930 1.20092 0.91153 0.95164 1.19005 1.17693 0.82596 0.87469 0.77104 1.90931 1.85887 1.14583 1.46359 1.43038 1.03265 1.10559 1.71801 1.18344 0.85507 0.88868 0.96305 1.21645 0.89753 1.01741 1.14577 1.18013 0.93949 0.91344 0.86235 1.19875 0.94412 0.96419 1.40685 0.90070 1.26763 1.02637 0.96921 0.91484 1.69765 1.35710 1.10268 1.28390 0.85058 0.76691 0.78405 0.78953 1.18454 1.18600 1.19228 1.22116 0.97439 0.96877 1.15511 1.22177 0.87879 0.98503 0.95500 1.67304 1.34600 1.03391 1.24238 1.21130 0.92561 0.89056 1.07219 1.17150 0.75154 0.84556 0.74715 1.93138 1.43730 1.96463 1.81076 1.93433 1.63824 1.74878 1.80548 1.93252 1.95473 1.90467 1.35804 0.87468 0.85594 0.86832 0.74939 0.73845 0.85000 0.89739 0.86705 0.83402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 11.16 127.77 1.43 2.09 16 2 N -0.32 -6.62 3.98 -354.31 -1.41 -8.03 16 3 N -0.27 -5.85 12.50 -56.26 -0.70 -6.55 16 4 C 0.09 2.04 11.51 85.66 0.99 3.03 16 5 C -0.24 -7.01 6.09 -20.15 -0.12 -7.13 16 6 C 0.57 21.81 7.71 86.65 0.67 22.48 16 7 O -0.50 -23.35 11.46 -4.06 -0.05 -23.40 16 8 N -0.64 -24.77 5.37 -311.65 -1.67 -26.44 16 9 C 0.34 16.25 7.40 132.78 0.98 17.24 16 10 C -0.25 -12.72 8.61 22.99 0.20 -12.52 16 11 C 0.11 5.96 5.60 -21.11 -0.12 5.84 16 12 C -0.48 -24.73 9.14 23.52 0.21 -24.51 16 13 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 14 C 0.04 1.79 5.31 85.29 0.45 2.25 16 15 N -0.82 -38.83 10.70 21.84 0.23 -38.60 16 16 Si 0.99 35.48 29.57 68.60 2.03 37.51 16 17 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 18 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 19 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 20 C -0.30 -14.62 9.90 22.84 0.23 -14.40 16 21 C 0.11 5.47 11.15 84.50 0.94 6.41 16 22 N -0.58 -29.57 7.88 -193.57 -1.53 -31.09 16 23 C 0.04 0.95 6.46 42.14 0.27 1.23 16 24 C 0.54 14.85 3.24 71.23 0.23 15.08 16 25 F -0.16 -3.40 14.52 44.97 0.65 -2.75 16 26 F -0.15 -5.14 13.50 44.97 0.61 -4.53 16 27 F -0.17 -4.82 17.30 44.97 0.78 -4.04 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 1.07 5.52 -2.39 -0.01 1.06 16 31 H 0.23 3.45 7.51 -2.91 -0.02 3.43 16 32 H 0.42 12.88 7.67 -92.71 -0.71 12.16 16 33 H 0.13 6.55 6.11 -2.91 -0.02 6.53 16 34 H 0.29 12.33 8.29 -92.71 -0.77 11.56 16 35 H 0.11 5.20 8.06 -2.91 -0.02 5.17 16 36 H 0.15 6.18 8.06 -2.91 -0.02 6.15 16 Total: -1.00 -70.36 326.77 5.78 -64.58 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.48 Total: 26.27 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 6.36 Total: 17.09 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -5.08 Total: -110.72 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 9 Polarization: -13.36 SS G_CDS: 2.04 Total: -11.32 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -70.36 5.78 -64.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610791504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.447 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds