Wall clock time and date at job start Sat Apr 11 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65591 * 120.00507 * 2 1 4 4 O 1.42095 * 104.27889 * 308.93211 * 3 2 1 5 5 O 1.42104 * 104.28093 * 181.07142 * 3 2 1 6 6 C 1.81405 * 104.44843 * 65.00063 * 3 2 1 7 7 H 1.09001 * 110.91735 * 297.54893 * 6 3 2 8 8 C 1.55157 * 111.00403 * 61.45575 * 6 3 2 9 9 C 1.54321 * 103.10033 * 153.66451 * 8 6 3 10 10 N 1.47019 * 107.27531 * 337.71659 * 9 8 6 11 11 S 1.65600 * 125.65047 * 178.90679 * 10 9 8 12 12 O 1.42098 * 104.27688 * 206.09757 * 11 10 9 13 13 O 1.42101 * 104.27588 * 333.95036 * 11 10 9 14 14 C 1.81396 * 104.45050 * 90.02306 * 11 10 9 15 15 C 1.53001 * 109.47316 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.47472 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47369 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99719 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00012 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00110 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47418 * 59.99915 * 21 19 17 23 23 H 1.48500 * 109.46825 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46900 * 299.99507 * 21 19 17 25 25 C 1.47431 * 108.70142 * 358.94050 * 10 9 8 26 26 H 1.08997 * 109.47975 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47064 * 300.00238 * 1 2 3 28 28 H 1.09005 * 109.46815 * 59.99653 * 1 2 3 29 29 H 0.97009 * 119.99383 * 179.97438 * 2 1 3 30 30 H 1.09002 * 110.72219 * 35.21147 * 8 6 3 31 31 H 1.09003 * 110.71618 * 272.11760 * 8 6 3 32 32 H 1.09001 * 109.88480 * 97.13771 * 9 8 6 33 33 H 1.09003 * 109.88132 * 218.14177 * 9 8 6 34 34 H 1.08998 * 109.47069 * 300.00391 * 14 11 10 35 35 H 1.09004 * 109.47184 * 60.00168 * 14 11 10 36 36 H 1.09004 * 109.47006 * 300.00118 * 15 14 11 37 37 H 1.09004 * 109.46801 * 60.00002 * 15 14 11 38 38 H 1.08998 * 109.46919 * 300.00464 * 16 15 14 39 39 H 1.09001 * 109.46987 * 59.99661 * 16 15 14 40 40 H 0.97003 * 120.00089 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.36190 * 142.96411 * 25 10 9 42 42 H 1.08999 * 110.36356 * 265.28933 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4340 0.0000 4 8 1.7189 2.1702 -1.0712 5 8 3.6607 1.0490 -0.0258 6 6 1.8765 2.1972 1.5921 7 1 0.8076 2.4000 1.6586 8 6 2.3491 1.3106 2.7744 9 6 2.5540 2.3292 3.9154 10 7 2.7517 3.6469 3.2941 11 16 2.9870 5.0711 4.1055 12 8 2.5170 6.0675 3.2080 13 8 2.3607 4.8648 5.3643 14 6 4.7865 5.1885 4.3015 15 6 5.1354 6.4790 5.0458 16 6 6.6532 6.5783 5.2105 17 6 6.9968 7.8490 5.9442 18 1 6.2111 8.5190 6.2609 19 6 8.3141 8.1568 6.2102 20 7 9.2709 7.3413 5.8240 21 14 8.7399 9.7316 7.1202 22 1 8.0971 9.7191 8.4588 23 1 10.2131 9.8281 7.2800 24 1 8.2480 10.8993 6.3457 25 6 2.7050 3.4904 1.8288 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9499 -0.8402 0.0004 30 1 3.2865 0.8105 2.5309 31 1 1.5829 0.5823 3.0405 32 1 1.6726 2.3501 4.5565 33 1 3.4320 2.0577 4.5016 34 1 5.1466 4.3316 4.8707 35 1 5.2591 5.1970 3.3193 36 1 4.7752 7.3357 4.4761 37 1 4.6627 6.4710 6.0280 38 1 7.0137 5.7216 5.7799 39 1 7.1255 6.5864 4.2282 40 1 10.1978 7.5580 6.0108 41 1 2.2096 4.3468 1.3715 42 1 3.7117 3.3744 1.4275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611003263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:44 Heat of formation + Delta-G solvation = -145.912870 kcal Electronic energy + Delta-G solvation = -25838.330332 eV Core-core repulsion = 21879.738355 eV Total energy + Delta-G solvation = -3958.591977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.86419 -37.53359 -37.03451 -36.39967 -35.86810 -35.51875 -34.70451 -32.20854 -31.61388 -29.67074 -27.83975 -26.50898 -23.90649 -23.33473 -22.28850 -20.59924 -19.75303 -19.13383 -18.35146 -17.89660 -17.45740 -16.69363 -16.59921 -16.13649 -15.76135 -15.40054 -15.18069 -14.53873 -14.47814 -14.30509 -14.08940 -13.88665 -13.84600 -13.37984 -12.75564 -12.60835 -12.51780 -12.42429 -12.32657 -12.24838 -12.09778 -12.03894 -11.94224 -11.83827 -11.77595 -11.58304 -11.28486 -11.07888 -10.90874 -10.90447 -10.47241 -10.09472 -9.97741 -9.59913 -9.29541 -9.04433 -8.41608 -6.06528 -4.09996 -0.26537 0.28883 2.20245 2.58763 3.22784 3.31582 3.35560 3.38563 3.45656 3.73037 3.88481 3.95930 4.25201 4.37390 4.41576 4.44018 4.69347 4.77235 4.87523 4.99415 5.03909 5.10549 5.14101 5.19277 5.19730 5.28234 5.29785 5.30910 5.51289 5.71260 5.84953 6.00290 6.24257 6.39419 6.40332 6.83565 7.54935 7.64622 7.90947 8.31017 8.95892 9.54748 11.04614 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.002386 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.374147 B =11729.986376 C =12222.480331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.121 6.121 3 S 2.623 3.377 4 O -0.948 6.948 5 O -0.947 6.947 6 C -0.613 4.613 7 H 0.150 0.850 8 C -0.103 4.103 9 C 0.124 3.876 10 N -1.012 6.012 11 S 2.611 3.389 12 O -0.954 6.954 13 O -0.953 6.953 14 C -0.607 4.607 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.140 3.860 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.419 0.581 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.103 0.897 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.643 -19.774 -10.397 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.880 5.880 3 S 2.712 3.288 4 O -0.938 6.938 5 O -0.937 6.937 6 C -0.723 4.723 7 H 0.167 0.833 8 C -0.143 4.143 9 C -0.002 4.002 10 N -0.849 5.849 11 S 2.709 3.291 12 O -0.945 6.945 13 O -0.944 6.944 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C 0.012 3.988 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.253 0.747 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.749 -18.660 -10.771 28.560 hybrid contribution 0.760 0.118 1.026 1.282 sum -17.989 -18.542 -9.744 27.610 Atomic orbital electron populations 1.21522 0.78599 1.04394 1.02035 1.55354 1.16052 1.24541 1.92085 1.04791 0.73855 0.74018 0.76111 1.93625 1.78889 1.72348 1.48948 1.93638 1.32233 1.81023 1.86798 1.32039 1.11131 1.08029 1.21076 0.83250 1.22468 1.02885 0.96739 0.92200 1.21652 1.02457 0.80993 0.95062 1.58836 1.88648 1.23372 1.14025 1.05202 0.78732 0.71702 0.73448 1.93570 1.79489 1.56540 1.64902 1.93568 1.73966 1.84306 1.42544 1.30592 1.23059 1.09389 1.10901 1.21525 1.03766 0.90949 0.98319 1.19062 0.86670 0.97459 0.97548 1.21204 0.92277 1.06107 1.37008 0.92414 1.25022 0.96473 0.97035 0.95838 1.69947 0.99951 1.36780 1.46701 0.86602 0.77186 0.83582 0.80336 1.20129 1.21233 1.20102 1.21743 0.99074 0.95573 0.82377 0.89828 0.92179 0.91254 0.74655 0.88755 0.88492 0.90313 0.90523 0.85245 0.85212 0.91494 0.91532 0.96090 0.96041 0.92800 0.87826 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.22 11.03 59.85 0.66 0.88 16 2 N -1.12 -4.80 6.05 -16.63 -0.10 -4.90 16 3 S 2.62 20.12 5.00 -107.50 -0.54 19.59 16 4 O -0.95 -10.62 17.73 -57.54 -1.02 -11.64 16 5 O -0.95 -10.11 17.67 -57.54 -1.02 -11.12 16 6 C -0.61 -4.01 3.64 -24.32 -0.09 -4.10 16 7 H 0.15 0.66 7.95 -51.93 -0.41 0.25 16 8 C -0.10 -0.56 6.39 -24.90 -0.16 -0.72 16 9 C 0.12 1.03 6.90 -3.07 -0.02 1.01 16 10 N -1.01 -11.15 3.62 -111.13 -0.40 -11.55 16 11 S 2.61 38.13 5.65 -107.50 -0.61 37.52 16 12 O -0.95 -16.46 17.28 -57.54 -0.99 -17.45 16 13 O -0.95 -16.23 17.60 -57.54 -1.01 -17.24 16 14 C -0.61 -9.29 6.18 37.16 0.23 -9.06 16 15 C -0.11 -2.14 5.16 -26.73 -0.14 -2.27 16 16 C 0.03 0.78 4.97 -27.88 -0.14 0.65 16 17 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 21 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.14 1.33 6.58 -2.26 -0.01 1.32 16 26 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 27 H 0.06 0.07 7.90 -51.93 -0.41 -0.34 16 28 H 0.07 0.25 8.04 -51.93 -0.42 -0.17 16 29 H 0.42 1.13 8.92 -34.47 -0.31 0.83 16 30 H 0.09 0.47 7.67 -51.93 -0.40 0.07 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.13 1.75 8.14 -51.92 -0.42 1.32 16 35 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.10 0.98 7.67 -51.93 -0.40 0.58 16 42 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 LS Contribution 373.83 15.07 5.63 5.63 Total: -1.00 -39.94 373.83 -10.96 -50.90 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -6.53 Total: -4.52 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: -0.08 Total: -25.93 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.23 Total: -42.33 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -4.04 Total: -57.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 58.26 SS G_CDS: -1.14 Total: 57.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.94 -10.96 -50.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611003263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.016 kcal (2) G-P(sol) polarization free energy of solvation -39.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds