Wall clock time and date at job start Sat Apr 11 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65591 * 120.00507 * 2 1 4 4 O 1.42095 * 104.27889 * 308.93211 * 3 2 1 5 5 O 1.42104 * 104.28093 * 181.07142 * 3 2 1 6 6 C 1.81405 * 104.44843 * 65.00063 * 3 2 1 7 7 H 1.09001 * 110.91735 * 297.54893 * 6 3 2 8 8 C 1.55157 * 111.00403 * 61.45575 * 6 3 2 9 9 C 1.54321 * 103.10033 * 153.66451 * 8 6 3 10 10 N 1.47019 * 107.27531 * 337.71659 * 9 8 6 11 11 S 1.65600 * 125.65047 * 178.90679 * 10 9 8 12 12 O 1.42098 * 104.27688 * 206.09757 * 11 10 9 13 13 O 1.42101 * 104.27588 * 333.95036 * 11 10 9 14 14 C 1.81396 * 104.45050 * 90.02306 * 11 10 9 15 15 C 1.53001 * 109.47316 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.47472 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47369 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99719 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00012 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00110 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47418 * 59.99915 * 21 19 17 23 23 H 1.48500 * 109.46825 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46900 * 299.99507 * 21 19 17 25 25 C 1.47431 * 108.70142 * 358.94050 * 10 9 8 26 26 H 1.08997 * 109.47975 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47064 * 300.00238 * 1 2 3 28 28 H 1.09005 * 109.46815 * 59.99653 * 1 2 3 29 29 H 0.97009 * 119.99383 * 179.97438 * 2 1 3 30 30 H 1.09002 * 110.72219 * 35.21147 * 8 6 3 31 31 H 1.09003 * 110.71618 * 272.11760 * 8 6 3 32 32 H 1.09001 * 109.88480 * 97.13771 * 9 8 6 33 33 H 1.09003 * 109.88132 * 218.14177 * 9 8 6 34 34 H 1.08998 * 109.47069 * 300.00391 * 14 11 10 35 35 H 1.09004 * 109.47184 * 60.00168 * 14 11 10 36 36 H 1.09004 * 109.47006 * 300.00118 * 15 14 11 37 37 H 1.09004 * 109.46801 * 60.00002 * 15 14 11 38 38 H 1.08998 * 109.46919 * 300.00464 * 16 15 14 39 39 H 1.09001 * 109.46987 * 59.99661 * 16 15 14 40 40 H 0.97003 * 120.00089 * 179.97438 * 20 19 17 41 41 H 1.08999 * 110.36190 * 142.96411 * 25 10 9 42 42 H 1.08999 * 110.36356 * 265.28933 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4340 0.0000 4 8 1.7189 2.1702 -1.0712 5 8 3.6607 1.0490 -0.0258 6 6 1.8765 2.1972 1.5921 7 1 0.8076 2.4000 1.6586 8 6 2.3491 1.3106 2.7744 9 6 2.5540 2.3292 3.9154 10 7 2.7517 3.6469 3.2941 11 16 2.9870 5.0711 4.1055 12 8 2.5170 6.0675 3.2080 13 8 2.3607 4.8648 5.3643 14 6 4.7865 5.1885 4.3015 15 6 5.1354 6.4790 5.0458 16 6 6.6532 6.5783 5.2105 17 6 6.9968 7.8490 5.9442 18 1 6.2111 8.5190 6.2609 19 6 8.3141 8.1568 6.2102 20 7 9.2709 7.3413 5.8240 21 14 8.7399 9.7316 7.1202 22 1 8.0971 9.7191 8.4588 23 1 10.2131 9.8281 7.2800 24 1 8.2480 10.8993 6.3457 25 6 2.7050 3.4904 1.8288 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.9499 -0.8402 0.0004 30 1 3.2865 0.8105 2.5309 31 1 1.5829 0.5823 3.0405 32 1 1.6726 2.3501 4.5565 33 1 3.4320 2.0577 4.5016 34 1 5.1466 4.3316 4.8707 35 1 5.2591 5.1970 3.3193 36 1 4.7752 7.3357 4.4761 37 1 4.6627 6.4710 6.0280 38 1 7.0137 5.7216 5.7799 39 1 7.1255 6.5864 4.2282 40 1 10.1978 7.5580 6.0108 41 1 2.2096 4.3468 1.3715 42 1 3.7117 3.3744 1.4275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611003263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:43 Heat of formation + Delta-G solvation = -179.834043 kcal Electronic energy + Delta-G solvation = -25839.801265 eV Core-core repulsion = 21879.738355 eV Total energy + Delta-G solvation = -3960.062909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.53462 -38.30839 -38.24449 -37.15075 -37.11005 -36.49879 -35.85404 -34.18979 -32.32028 -30.28658 -29.68629 -26.75437 -25.68128 -24.23664 -22.87770 -22.30755 -20.28551 -20.13884 -19.05400 -18.84481 -18.58753 -18.04234 -17.32923 -17.14466 -17.10846 -16.51884 -16.22714 -15.80167 -15.74652 -14.87977 -14.73528 -14.63532 -14.50437 -14.43491 -14.10426 -13.76672 -13.57169 -13.46557 -13.32712 -13.27097 -13.21627 -13.16709 -13.03649 -12.82434 -12.74806 -12.67886 -12.58320 -12.45160 -12.19764 -12.08141 -11.77969 -11.65304 -11.41878 -11.14701 -10.58834 -10.42209 -10.08468 -8.24039 -6.35557 -0.97506 -0.76858 1.39263 1.41989 1.49946 1.56382 1.71845 2.38637 2.64245 2.70353 2.86944 3.06862 3.09396 3.15610 3.49637 3.68881 3.84199 3.88756 4.15092 4.19612 4.28367 4.34615 4.40398 4.58386 4.59395 4.64945 4.72530 4.81734 4.87881 4.93487 4.97227 5.03711 5.08617 5.10582 5.26826 5.42759 5.59739 5.77160 6.16030 6.17248 6.79871 7.33873 8.87286 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.023398 B = 0.002386 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.374147 B =11729.986376 C =12222.480331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.109 6.109 3 S 2.636 3.364 4 O -0.990 6.990 5 O -0.982 6.982 6 C -0.599 4.599 7 H 0.175 0.825 8 C -0.099 4.099 9 C 0.107 3.893 10 N -1.009 6.009 11 S 2.641 3.359 12 O -0.983 6.983 13 O -0.977 6.977 14 C -0.612 4.612 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.554 4.554 18 H 0.061 0.939 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.268 1.268 25 C 0.117 3.883 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.428 0.572 30 H 0.100 0.900 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.004 0.996 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.100 0.900 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.147 -21.060 -9.877 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.872 5.872 3 S 2.727 3.273 4 O -0.980 6.980 5 O -0.972 6.972 6 C -0.710 4.710 7 H 0.193 0.807 8 C -0.138 4.138 9 C -0.018 4.018 10 N -0.848 5.848 11 S 2.739 3.261 12 O -0.974 6.974 13 O -0.967 6.967 14 C -0.743 4.743 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.592 4.592 18 H 0.079 0.921 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.192 1.192 25 C -0.010 4.010 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.265 0.735 30 H 0.119 0.881 31 H 0.154 0.846 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.243 -19.954 -10.262 30.220 hybrid contribution 1.176 0.414 0.838 1.502 sum -19.067 -19.540 -9.424 28.882 Atomic orbital electron populations 1.21807 0.77200 1.06168 1.02544 1.55010 1.16817 1.23559 1.91805 1.04107 0.72973 0.74207 0.75986 1.93577 1.79350 1.73736 1.51297 1.93586 1.34553 1.81663 1.87406 1.31945 1.12236 1.06529 1.20330 0.80713 1.22618 1.04630 0.96409 0.90190 1.22048 1.03378 0.80044 0.96338 1.58473 1.88064 1.23460 1.14797 1.03994 0.77589 0.71878 0.72653 1.93529 1.79692 1.58586 1.65546 1.93532 1.74151 1.84983 1.44036 1.30588 1.24926 1.07501 1.11276 1.21323 1.00115 0.93725 0.99382 1.18961 0.90195 0.95866 0.95739 1.21706 0.92803 1.07295 1.37351 0.92065 1.25958 0.96413 1.00593 0.96681 1.70067 1.00351 1.38720 1.47859 0.85513 0.77114 0.79284 0.79252 1.19114 1.20635 1.19244 1.22055 1.00417 0.97229 0.81319 0.87449 0.90021 0.92563 0.73517 0.88109 0.84642 0.89746 0.89446 0.83459 0.83916 0.91531 0.91286 0.97807 0.98019 0.92597 0.88182 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.17 11.03 127.77 1.41 1.58 16 2 N -1.11 -6.88 6.05 -206.54 -1.25 -8.13 16 3 S 2.64 37.01 5.00 -56.49 -0.28 36.73 16 4 O -0.99 -21.88 17.73 -127.65 -2.26 -24.15 16 5 O -0.98 -20.25 17.67 -127.65 -2.26 -22.50 16 6 C -0.60 -6.33 3.64 32.16 0.12 -6.22 16 7 H 0.18 0.94 7.95 -2.39 -0.02 0.92 16 8 C -0.10 -0.73 6.39 31.78 0.20 -0.53 16 9 C 0.11 1.48 6.90 86.73 0.60 2.07 16 10 N -1.01 -20.55 3.62 -505.51 -1.83 -22.38 16 11 S 2.64 75.17 5.65 -56.49 -0.32 74.85 16 12 O -0.98 -33.64 17.28 -127.65 -2.21 -35.84 16 13 O -0.98 -32.32 17.60 -127.65 -2.25 -34.56 16 14 C -0.61 -18.52 6.18 71.98 0.44 -18.08 16 15 C -0.11 -4.33 5.16 30.59 0.16 -4.17 16 16 C 0.03 1.59 4.97 29.85 0.15 1.74 16 17 C -0.55 -31.65 9.11 25.60 0.23 -31.42 16 18 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 19 C 0.00 0.11 5.46 84.65 0.46 0.57 16 20 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 21 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.12 2.07 6.58 87.02 0.57 2.64 16 26 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.08 -0.13 7.90 -2.39 -0.02 -0.15 16 28 H 0.06 0.31 8.04 -2.38 -0.02 0.29 16 29 H 0.43 1.28 8.92 -96.74 -0.86 0.42 16 30 H 0.10 0.67 7.67 -2.39 -0.02 0.65 16 31 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.15 3.86 8.14 -2.39 -0.02 3.84 16 35 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 37 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 41 H 0.10 1.83 7.67 -2.39 -0.02 1.81 16 42 H 0.09 1.40 8.04 -2.39 -0.02 1.38 16 Total: -1.00 -87.51 373.83 -5.84 -93.34 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.16 Total: 3.98 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 4.35 Total: -51.81 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.80 Total: -86.42 kcal Atomic # 8 Polarization: -108.08 SS G_CDS: -8.97 Total: -117.06 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 112.18 SS G_CDS: -0.60 Total: 111.58 kcal Total: -87.51 -5.84 -93.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611003263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.491 kcal (2) G-P(sol) polarization free energy of solvation -87.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds