Wall clock time and date at job start Sat Apr 11 2020 05:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65602 * 120.00157 * 2 1 4 4 O 1.42102 * 104.27199 * 309.14112 * 3 2 1 5 5 O 1.42096 * 104.27684 * 181.28882 * 3 2 1 6 6 C 1.81395 * 104.45097 * 65.21396 * 3 2 1 7 7 H 1.09003 * 110.88821 * 298.76752 * 6 3 2 8 8 C 1.55162 * 111.00487 * 174.89117 * 6 3 2 9 9 C 1.54324 * 102.94126 * 206.38715 * 8 6 3 10 10 N 1.47026 * 107.27369 * 22.19040 * 9 8 6 11 11 S 1.65593 * 125.64746 * 181.02108 * 10 9 8 12 12 O 1.42097 * 104.28110 * 333.95590 * 11 10 9 13 13 O 1.42094 * 104.27570 * 206.09427 * 11 10 9 14 14 C 1.81403 * 104.44660 * 90.02454 * 11 10 9 15 15 C 1.53007 * 109.46951 * 179.97438 * 14 11 10 16 16 C 1.53007 * 109.46912 * 180.02562 * 15 14 11 17 17 C 1.50697 * 109.46901 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00299 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99726 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00191 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99787 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47104 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47228 * 119.99738 * 21 19 17 24 24 H 1.48502 * 109.47284 * 240.00052 * 21 19 17 25 25 C 1.47421 * 108.69975 * 1.28679 * 10 9 8 26 26 H 1.08998 * 109.47122 * 304.90298 * 1 2 3 27 27 H 1.09000 * 109.46629 * 64.89814 * 1 2 3 28 28 H 1.09000 * 109.47185 * 184.89927 * 1 2 3 29 29 H 0.96996 * 119.99535 * 179.97438 * 2 1 3 30 30 H 1.08995 * 110.72374 * 88.01922 * 8 6 3 31 31 H 1.09001 * 110.86675 * 324.82210 * 8 6 3 32 32 H 1.08997 * 109.88186 * 262.77377 * 9 8 6 33 33 H 1.08997 * 110.01113 * 141.68128 * 9 8 6 34 34 H 1.09003 * 109.47318 * 60.00223 * 14 11 10 35 35 H 1.08994 * 109.47643 * 299.99921 * 14 11 10 36 36 H 1.08994 * 109.47101 * 60.00436 * 15 14 11 37 37 H 1.08997 * 109.46951 * 300.00107 * 15 14 11 38 38 H 1.09004 * 109.46958 * 60.00265 * 16 15 14 39 39 H 1.08997 * 109.46899 * 300.00097 * 16 15 14 40 40 H 0.96999 * 119.99884 * 180.02562 * 20 19 17 41 41 H 1.09004 * 110.36899 * 94.48284 * 25 10 9 42 42 H 1.09000 * 110.36857 * 216.80720 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4341 0.0000 4 8 1.7154 2.1722 -1.0681 5 8 3.6606 1.0492 -0.0310 6 6 1.8817 2.1944 1.5947 7 1 0.8100 2.3771 1.6732 8 6 2.6863 3.5034 1.8109 9 6 2.7592 3.6143 3.3484 10 7 2.5541 2.2644 3.8938 11 16 2.5207 1.8677 5.5011 12 8 3.3052 2.8739 6.1268 13 8 2.9173 0.5036 5.5337 14 6 0.7770 2.0351 5.9725 15 6 0.6140 1.6904 7.4543 16 6 -0.8569 1.8310 7.8517 17 6 -1.0174 1.4921 9.3113 18 1 -0.1566 1.2047 9.8968 19 6 -2.2634 1.5479 9.8989 20 7 -3.3117 1.8973 9.1859 21 14 -2.4625 1.1271 11.7080 22 1 -1.1405 0.7675 12.2810 23 1 -3.0134 2.3011 12.4316 24 1 -3.3919 -0.0224 11.8495 25 6 2.3895 1.3216 2.7725 26 1 -0.3633 0.5880 0.8428 27 1 -0.3632 0.4360 -0.9306 28 1 -0.3633 -1.0239 0.0878 29 1 1.9499 -0.8401 0.0004 30 1 2.1561 4.3563 1.3874 31 1 3.6851 3.4204 1.3824 32 1 1.9774 4.2826 3.7093 33 1 3.7367 3.9911 3.6493 34 1 0.1717 1.3553 5.3730 35 1 0.4507 3.0606 5.7997 36 1 1.2193 2.3699 8.0541 37 1 0.9401 0.6648 7.6267 38 1 -1.4619 1.1512 7.2518 39 1 -1.1834 2.8565 7.6792 40 1 -4.1882 1.9369 9.5994 41 1 3.3446 0.8602 2.5214 42 1 1.6528 0.5584 3.0235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611003264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:46 Heat of formation + Delta-G solvation = -146.784448 kcal Electronic energy + Delta-G solvation = -26018.998061 eV Core-core repulsion = 22060.368290 eV Total energy + Delta-G solvation = -3958.629771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.101 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.89269 -37.53325 -37.05288 -36.40601 -35.88494 -35.43947 -34.75696 -32.25714 -31.64481 -29.66473 -27.89349 -26.42733 -23.95713 -23.27706 -22.36727 -20.64346 -19.73413 -19.09968 -18.37373 -17.92419 -17.33608 -16.77631 -16.66932 -16.09237 -15.87936 -15.32008 -15.14988 -14.54415 -14.48571 -14.37294 -14.02436 -13.88314 -13.84379 -13.30501 -12.76386 -12.68201 -12.55155 -12.43441 -12.35775 -12.23048 -12.09215 -12.04563 -11.97669 -11.88674 -11.81483 -11.55175 -11.33928 -11.09333 -10.98601 -10.91535 -10.48461 -10.03863 -10.01645 -9.64470 -9.31547 -9.06353 -8.47080 -6.11778 -4.14964 -0.24234 0.25458 2.21894 2.58607 3.24656 3.25291 3.33110 3.37894 3.41695 3.70017 3.88187 4.01661 4.20885 4.34943 4.37536 4.52993 4.69483 4.78380 4.91705 4.99102 4.99614 5.03206 5.14903 5.24721 5.24971 5.30192 5.31434 5.34921 5.51578 5.69172 5.79880 5.98138 6.19634 6.35068 6.46817 6.78355 7.49470 7.58627 7.86066 8.26144 8.91431 9.50250 10.99446 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.002623 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.476401 B =10670.626665 C =11475.634341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.122 6.122 3 S 2.624 3.376 4 O -0.950 6.950 5 O -0.950 6.950 6 C -0.617 4.617 7 H 0.152 0.848 8 C -0.106 4.106 9 C 0.126 3.874 10 N -1.013 6.013 11 S 2.611 3.389 12 O -0.952 6.952 13 O -0.954 6.954 14 C -0.607 4.607 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.149 3.851 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.420 0.580 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.088 0.912 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.553 0.018 -21.012 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.882 5.882 3 S 2.713 3.287 4 O -0.940 6.940 5 O -0.940 6.940 6 C -0.727 4.727 7 H 0.170 0.830 8 C -0.147 4.147 9 C 0.000 4.000 10 N -0.850 5.850 11 S 2.709 3.291 12 O -0.943 6.943 13 O -0.944 6.944 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.022 3.978 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.255 0.745 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.570 0.261 -21.116 23.185 hybrid contribution -1.310 -0.389 1.411 1.964 sum 8.261 -0.129 -19.705 21.367 Atomic orbital electron populations 1.21545 0.78365 1.04595 1.02104 1.55354 1.16227 1.24575 1.92033 1.04736 0.73808 0.73948 0.76171 1.93620 1.78847 1.72481 1.49006 1.93628 1.32482 1.81018 1.86848 1.32027 1.11343 1.08632 1.20737 0.82982 1.22480 1.00015 0.94658 0.97513 1.21647 1.02741 0.83355 0.92229 1.58862 1.88751 1.14945 1.22456 1.05224 0.78542 0.74128 0.71231 1.93574 1.66850 1.60293 1.73558 1.93576 1.81445 1.34703 1.84692 1.30591 1.22826 1.11260 1.09228 1.21527 1.04274 1.01292 0.87515 1.19064 0.87495 0.97652 0.96499 1.21284 0.93818 1.46293 0.95088 0.92288 1.25019 0.95938 0.95107 0.98300 1.69959 0.99230 1.48117 1.36111 0.86496 0.78281 0.78081 0.84943 1.19574 1.20905 1.20916 1.21648 1.01722 0.90715 0.83676 0.91907 0.91416 0.89628 0.74517 0.87972 0.89291 0.90629 0.89953 0.85467 0.85353 0.91493 0.91505 0.96140 0.96120 0.92913 0.89415 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.33 11.02 59.85 0.66 0.99 16 2 N -1.12 -6.14 6.07 -16.63 -0.10 -6.24 16 3 S 2.62 20.33 5.00 -107.50 -0.54 19.79 16 4 O -0.95 -10.13 17.81 -57.54 -1.02 -11.16 16 5 O -0.95 -10.22 17.61 -57.54 -1.01 -11.23 16 6 C -0.62 -3.99 3.57 -24.46 -0.09 -4.07 16 7 H 0.15 0.62 7.76 -51.93 -0.40 0.21 16 8 C -0.11 -0.68 6.43 -24.89 -0.16 -0.84 16 9 C 0.13 1.07 6.89 -3.06 -0.02 1.05 16 10 N -1.01 -10.81 3.62 -111.29 -0.40 -11.21 16 11 S 2.61 37.09 5.65 -107.50 -0.61 36.49 16 12 O -0.95 -16.18 17.60 -57.54 -1.01 -17.19 16 13 O -0.95 -16.01 17.60 -57.54 -1.01 -17.03 16 14 C -0.61 -8.77 6.18 37.16 0.23 -8.54 16 15 C -0.11 -2.08 5.16 -26.72 -0.14 -2.22 16 16 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 17 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 21 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.15 1.28 6.36 -2.41 -0.02 1.27 16 26 H 0.06 0.18 7.63 -51.93 -0.40 -0.22 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.42 1.73 8.92 -34.47 -0.31 1.42 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.52 8.04 -51.93 -0.42 0.10 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.13 1.59 8.14 -51.92 -0.42 1.16 16 35 H 0.13 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.09 0.75 7.63 -51.93 -0.40 0.35 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -39.31 373.97 -10.98 -50.29 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -6.53 Total: -3.97 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -0.08 Total: -25.06 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.23 Total: -42.77 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -4.06 Total: -56.60 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 57.42 SS G_CDS: -1.14 Total: 56.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -39.31 -10.98 -50.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611003264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.499 kcal (2) G-P(sol) polarization free energy of solvation -39.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds